| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.099] [SVM Score: 0.469169536017] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| LRG1 |
|
|
|
| RGD1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cellular bud | 6.9196E-4 | 2 | 166 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| signaling pathway | 8.5067E-4 | 2 | 184 | 2 | 6292 |
| signaling | 1.598E-3 | 2 | 252 | 2 | 6292 |
| response to acid | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| osmosensory signaling pathway | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| cellular response to osmotic stress | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| cellular response to abiotic stimulus | 6.9813E-3 | 2 | 22 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Rho GTPase activator activity | 1.819E-6 | 2 | 9 | 2 | 6292 |
| Ras GTPase activator activity | 9.6001E-6 | 2 | 20 | 2 | 6292 |
| GTPase activator activity | 2.5061E-5 | 2 | 32 | 2 | 6292 |
| small GTPase regulator activity | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| enzyme activator activity | 1.1171E-4 | 2 | 67 | 2 | 6292 |
| GTPase regulator activity | 1.7614E-4 | 2 | 84 | 2 | 6292 |
| nucleoside-triphosphatase regulator activity | 2.256E-4 | 2 | 95 | 2 | 6292 |
| enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |