From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.479907341173] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
preribosome | 2.8346E-5 | 2 | 34 | 2 | 6292 |
Noc2p-Noc3p complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
Noc1p-Noc2p complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
Noc complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
late endosome membrane | 1.5888E-3 | 2 | 5 | 1 | 6292 |
preribosome, small subunit precursor | 1.9064E-3 | 2 | 6 | 1 | 6292 |
preribosome, large subunit precursor | 2.859E-3 | 2 | 9 | 1 | 6292 |
90S preribosome | 5.3968E-3 | 2 | 17 | 1 | 6292 |
ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
late endosome | 6.9813E-3 | 2 | 22 | 1 | 6292 |
endosomal part | 7.2981E-3 | 2 | 23 | 1 | 6292 |
endosome membrane | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
establishment of ribosome localization | 1.6421E-5 | 2 | 26 | 2 | 6292 |
ribosome localization | 1.6421E-5 | 2 | 26 | 2 | 6292 |
ribosomal subunit export from nucleus | 1.6421E-5 | 2 | 26 | 2 | 6292 |
establishment of organelle localization | 7.5032E-5 | 2 | 55 | 2 | 6292 |
organelle localization | 1.8038E-4 | 2 | 85 | 2 | 6292 |
nuclear export | 2.6542E-4 | 2 | 103 | 2 | 6292 |
nuclear transport | 4.2367E-4 | 2 | 130 | 2 | 6292 |
nucleocytoplasmic transport | 4.2367E-4 | 2 | 130 | 2 | 6292 |
ribosomal small subunit export from nucleus | 2.224E-3 | 2 | 7 | 1 | 6292 |
ribosome biogenesis | 3.0157E-3 | 2 | 346 | 2 | 6292 |
ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
ribosomal small subunit biogenesis | 8.248E-3 | 2 | 26 | 1 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |