| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.083] [SVM Score: 0.499004955142] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleolus | 1.1194E-3 | 2 | 211 | 2 | 6292 |
| TRAMP complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| tRNA catabolic process | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| snRNA catabolic process | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| snoRNA catabolic process | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| ncRNA polyadenylation | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| ncRNA catabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| rRNA catabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| polyadenylation-dependent RNA catabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| polyadenylation-dependent ncRNA catabolic process | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| snRNA metabolic process | 2.859E-3 | 2 | 9 | 1 | 6292 |
| ncRNA 3'-end processing | 3.811E-3 | 2 | 12 | 1 | 6292 |
| snoRNA metabolic process | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| RNA polyadenylation | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ribonuclease III activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| polynucleotide adenylyltransferase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| adenylyltransferase activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| endoribonuclease activity, producing 5'-phosphomonoesters | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| endoribonuclease activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |