| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.508323560136] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| ATX2 |
|
|
|
| GEF1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| di-, tri-valent inorganic cation homeostasis | 1.0838E-4 | 2 | 66 | 2 | 6292 |
| cellular di-, tri-valent inorganic cation homeostasis | 1.0838E-4 | 2 | 66 | 2 | 6292 |
| cellular cation homeostasis | 2.7588E-4 | 2 | 105 | 2 | 6292 |
| cation homeostasis | 2.974E-4 | 2 | 109 | 2 | 6292 |
| cellular chemical homeostasis | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| cellular ion homeostasis | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| cellular homeostasis | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| chemical homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
| ion homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
| manganese ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| cellular manganese ion homeostasis | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| copper ion homeostasis | 2.224E-3 | 2 | 7 | 1 | 6292 |
| cellular copper ion homeostasis | 2.224E-3 | 2 | 7 | 1 | 6292 |
| homeostatic process | 4.1951E-3 | 2 | 408 | 2 | 6292 |
| regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.