From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.519471890422] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mating projection tip | 3.0063E-5 | 2 | 35 | 2 | 6292 |
cell projection part | 4.3504E-5 | 2 | 42 | 2 | 6292 |
cell projection | 5.9419E-5 | 2 | 49 | 2 | 6292 |
mating projection | 5.9419E-5 | 2 | 49 | 2 | 6292 |
site of polarized growth | 7.0879E-4 | 2 | 168 | 2 | 6292 |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
filamentous growth of a population of unicellular organisms | 2.0236E-4 | 2 | 90 | 2 | 6292 |
growth of unicellular organism as a thread of attached cells | 2.0236E-4 | 2 | 90 | 2 | 6292 |
filamentous growth | 2.8118E-4 | 2 | 106 | 2 | 6292 |
growth | 5.275E-4 | 2 | 145 | 2 | 6292 |
signaling pathway | 8.5067E-4 | 2 | 184 | 2 | 6292 |
osmosensory signaling pathway via Sho1 osmosensor | 9.5344E-4 | 2 | 3 | 1 | 6292 |
signaling | 1.598E-3 | 2 | 252 | 2 | 6292 |
cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
osmosensory signaling pathway | 6.6645E-3 | 2 | 21 | 1 | 6292 |
cellular response to abiotic stimulus | 6.9813E-3 | 2 | 22 | 1 | 6292 |
cellular response to osmotic stress | 6.9813E-3 | 2 | 22 | 1 | 6292 |
regulation of conjugation with cellular fusion by signal transduction | 8.5646E-3 | 2 | 27 | 1 | 6292 |
pheromone-dependent signal transduction involved in conjugation with cellular fusion | 8.5646E-3 | 2 | 27 | 1 | 6292 |
G-protein coupled receptor protein signaling pathway | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
MAP-kinase scaffold activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
protein complex scaffold | 6.3568E-4 | 2 | 2 | 1 | 6292 |
receptor signaling complex scaffold activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
osmosensor activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
transmembrane receptor activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |
receptor activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |