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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.523217465999]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

anaphase-promoting complex 8.6401E-6 2 19 2 6292
nuclear ubiquitin ligase complex 1.2783E-5 2 23 2 6292
ubiquitin ligase complex 4.5626E-5 2 43 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process 6.0632E-6 2 16 2 6292
mitotic metaphase/anaphase transition 3.3651E-5 2 37 2 6292
protein ubiquitination 1.051E-4 2 65 2 6292
proteasomal protein catabolic process 1.1854E-4 2 69 2 6292
proteasomal ubiquitin-dependent protein catabolic process 1.1854E-4 2 69 2 6292
protein modification by small protein conjugation 1.8468E-4 2 86 2 6292
mitosis 2.7062E-4 2 104 2 6292
nuclear division 2.8118E-4 2 106 2 6292
organelle fission 3.1973E-4 2 113 2 6292
protein modification by small protein conjugation or removal 3.2544E-4 2 114 2 6292
M phase of mitotic cell cycle 4.1068E-4 2 128 2 6292
modification-dependent protein catabolic process 6.1087E-4 2 156 2 6292
ubiquitin-dependent protein catabolic process 6.1087E-4 2 156 2 6292
proteolysis involved in cellular protein catabolic process 6.3467E-4 2 159 2 6292
modification-dependent macromolecule catabolic process 6.7534E-4 2 164 2 6292
cellular protein catabolic process 7.3441E-4 2 171 2 6292
proteolysis 8.8816E-4 2 188 2 6292
protein catabolic process 8.9766E-4 2 189 2 6292
mitotic cell cycle 1.6363E-3 2 255 2 6292
cellular macromolecule catabolic process 1.7674E-3 2 265 2 6292
M phase 2.1762E-3 2 294 2 6292
macromolecule catabolic process 2.1762E-3 2 294 2 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
cell cycle phase 3.5621E-3 2 376 2 6292
cyclin catabolic process 4.1283E-3 2 13 1 6292
cellular catabolic process 4.3405E-3 2 415 2 6292
cell cycle process 6.0534E-3 2 490 2 6292
catabolic process 6.2027E-3 2 496 2 6292
protein modification process 6.278E-3 2 499 2 6292
mitotic spindle elongation 6.6645E-3 2 21 1 6292
spindle elongation 6.6645E-3 2 21 1 6292
cell cycle 6.95E-3 2 525 2 6292
regulation of mitotic metaphase/anaphase transition 7.9314E-3 2 25 1 6292
macromolecule modification 8.1649E-3 2 569 2 6292
regulation of nuclear division 9.1975E-3 2 29 1 6292
regulation of mitosis 9.1975E-3 2 29 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle