From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.529203689212] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
manganese ion homeostasis | 5.0527E-7 | 2 | 5 | 2 | 6292 |
cellular manganese ion homeostasis | 5.0527E-7 | 2 | 5 | 2 | 6292 |
di-, tri-valent inorganic cation homeostasis | 1.0838E-4 | 2 | 66 | 2 | 6292 |
cellular di-, tri-valent inorganic cation homeostasis | 1.0838E-4 | 2 | 66 | 2 | 6292 |
cellular cation homeostasis | 2.7588E-4 | 2 | 105 | 2 | 6292 |
cation homeostasis | 2.974E-4 | 2 | 109 | 2 | 6292 |
cellular chemical homeostasis | 3.5475E-4 | 2 | 119 | 2 | 6292 |
cellular ion homeostasis | 3.5475E-4 | 2 | 119 | 2 | 6292 |
cellular homeostasis | 3.6076E-4 | 2 | 120 | 2 | 6292 |
chemical homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
ion homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
cellular calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
homeostatic process | 4.1951E-3 | 2 | 408 | 2 | 6292 |
metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
manganese ion transmembrane transporter activity | 7.579E-7 | 2 | 6 | 2 | 6292 |
transition metal ion transmembrane transporter activity | 1.9099E-5 | 2 | 28 | 2 | 6292 |
di-, tri-valent inorganic cation transmembrane transporter activity | 3.0063E-5 | 2 | 35 | 2 | 6292 |
metal ion transmembrane transporter activity | 5.2295E-5 | 2 | 46 | 2 | 6292 |
inorganic cation transmembrane transporter activity | 2.5516E-4 | 2 | 101 | 2 | 6292 |
ferrous iron transmembrane transporter activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
cation transmembrane transporter activity | 3.4879E-4 | 2 | 118 | 2 | 6292 |
ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
iron ion transmembrane transporter activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |