| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.532575507659] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
| envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
| organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleotide phosphorylation | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| nucleoside diphosphate phosphorylation | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| nucleotide metabolic process | 4.1068E-4 | 2 | 128 | 2 | 6292 |
| nucleoside phosphate metabolic process | 4.1068E-4 | 2 | 128 | 2 | 6292 |
| nucleobase, nucleoside and nucleotide metabolic process | 6.1875E-4 | 2 | 157 | 2 | 6292 |
| nucleoside diphosphate metabolic process | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| nucleoside triphosphate biosynthetic process | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phosphotransferase activity, phosphate group as acceptor | 2.779E-6 | 2 | 11 | 2 | 6292 |
| nucleobase, nucleoside, nucleotide kinase activity | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| nucleoside diphosphate kinase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
| adenylate kinase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| nucleotide kinase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |