From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.534820603688] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
CAX4 |
|
|
|
GAA1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
integral to endoplasmic reticulum membrane | 2.3495E-5 | 2 | 31 | 2 | 6292 |
intrinsic to endoplasmic reticulum membrane | 2.3495E-5 | 2 | 31 | 2 | 6292 |
integral to organelle membrane | 1.051E-4 | 2 | 65 | 2 | 6292 |
intrinsic to organelle membrane | 1.151E-4 | 2 | 68 | 2 | 6292 |
endoplasmic reticulum membrane | 4.4352E-4 | 2 | 133 | 2 | 6292 |
endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
GPI-anchor transamidase complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
lipid biosynthetic process | 4.2367E-4 | 2 | 130 | 2 | 6292 |
lipid metabolic process | 1.4491E-3 | 2 | 240 | 2 | 6292 |
attachment of GPI anchor to protein | 1.5888E-3 | 2 | 5 | 1 | 6292 |
protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
GPI anchor biosynthetic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
phosphoinositide biosynthetic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
GPI anchor metabolic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
GPI-anchor transamidase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |