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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.554637305693]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
AVT4
  • fungal-type vacuole membrane
  • vacuole
    		•
  • vacuolar transport
  • amino acid transport
    		•
  • L-isoleucine transmembrane transporter activity
  • L-glutamine transmembrane transporter activity
  • transporter activity
  • L-tyrosine transmembrane transporter activity
    		•
    AVT6
  • fungal-type vacuole membrane
  • vacuole
    		•
  • vacuolar transport
  • amino acid transport
    		•
  • L-aspartate transmembrane transporter activity
  • transporter activity
  • L-glutamate transmembrane transporter activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    fungal-type vacuole membrane 1.3647E-4 2 74 2 6292
    vacuolar membrane 3.1973E-4 2 113 2 6292
    vacuolar part 3.6682E-4 2 121 2 6292
    fungal-type vacuole 6.2668E-4 2 158 2 6292
    lytic vacuole 6.2668E-4 2 158 2 6292
    storage vacuole 6.2668E-4 2 158 2 6292
    vacuole 1.0983E-3 2 209 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    amino acid transport 3.9411E-5 2 40 2 6292
    amine transport 6.9626E-5 2 53 2 6292
    carboxylic acid transport 8.6451E-5 2 59 2 6292
    organic acid transport 8.9432E-5 2 60 2 6292
    vacuolar transport 3.312E-4 2 115 2 6292
    intracellular transport 7.7118E-3 2 553 2 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    L-amino acid transmembrane transporter activity 2.779E-6 2 11 2 6292
    amino acid transmembrane transporter activity 2.5061E-5 2 32 2 6292
    amine transmembrane transporter activity 4.3504E-5 2 42 2 6292
    carboxylic acid transmembrane transporter activity 5.9419E-5 2 49 2 6292
    organic acid transmembrane transporter activity 7.2304E-5 2 54 2 6292
    active transmembrane transporter activity 3.6682E-4 2 121 2 6292
    L-aspartate transmembrane transporter activity 6.3568E-4 2 2 1 6292
    acidic amino acid transmembrane transporter activity 6.3568E-4 2 2 1 6292
    L-glutamate transmembrane transporter activity 6.3568E-4 2 2 1 6292
    L-isoleucine transmembrane transporter activity 9.5344E-4 2 3 1 6292
    L-glutamine transmembrane transporter activity 9.5344E-4 2 3 1 6292
    L-tyrosine transmembrane transporter activity 9.5344E-4 2 3 1 6292
    aromatic amino acid transmembrane transporter activity 1.2712E-3 2 4 1 6292
    neutral amino acid transmembrane transporter activity 1.5888E-3 2 5 1 6292
    substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
    transmembrane transporter activity 2.3578E-3 2 306 2 6292
    substrate-specific transporter activity 2.8436E-3 2 336 2 6292
    transporter activity 4.1132E-3 2 404 2 6292
    YRC Informatics Platform - Version 3.0
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