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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.590536834769]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleobase biosynthetic process 1.2783E-5 2 23 2 6292
nucleobase metabolic process 2.6678E-5 2 33 2 6292
cellular aromatic compound metabolic process 1.6371E-4 2 81 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 2.0236E-4 2 90 2 6292
nucleobase, nucleoside and nucleotide biosynthetic process 2.0236E-4 2 90 2 6292
AMP biosynthetic process 3.1786E-4 2 1 1 6292
adenine salvage 3.1786E-4 2 1 1 6292
purine base salvage 3.1786E-4 2 1 1 6292
nucleobase, nucleoside and nucleotide metabolic process 6.1875E-4 2 157 2 6292
adenine biosynthetic process 6.3568E-4 2 2 1 6292
heterocycle metabolic process 7.3441E-4 2 171 2 6292
adenine metabolic process 9.5344E-4 2 3 1 6292
AMP metabolic process 1.2712E-3 2 4 1 6292
cellular nitrogen compound biosynthetic process 1.5351E-3 2 247 2 6292
purine base biosynthetic process 2.224E-3 2 7 1 6292
small molecule biosynthetic process 2.42E-3 2 310 2 6292
purine salvage 3.1764E-3 2 10 1 6292
'de novo' pyrimidine base biosynthetic process 4.1283E-3 2 13 1 6292
purine base metabolic process 4.7627E-3 2 15 1 6292
pyrimidine base biosynthetic process 5.0798E-3 2 16 1 6292
pyrimidine base metabolic process 5.7138E-3 2 18 1 6292
purine ribonucleoside monophosphate biosynthetic process 6.0308E-3 2 19 1 6292
ribonucleoside monophosphate biosynthetic process 6.3477E-3 2 20 1 6292
purine nucleoside monophosphate biosynthetic process 6.3477E-3 2 20 1 6292
pigment biosynthetic process 6.3477E-3 2 20 1 6292
cellular metabolic compound salvage 6.9813E-3 2 22 1 6292
pigment metabolic process 6.9813E-3 2 22 1 6292
purine ribonucleoside monophosphate metabolic process 7.6148E-3 2 24 1 6292
ribonucleoside monophosphate metabolic process 7.9314E-3 2 25 1 6292
purine nucleoside monophosphate metabolic process 7.9314E-3 2 25 1 6292
nucleoside monophosphate biosynthetic process 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transferase activity, transferring pentosyl groups 6.8716E-6 2 17 2 6292
transferase activity, transferring glycosyl groups 2.7062E-4 2 104 2 6292
adenine phosphoribosyltransferase activity 6.3568E-4 2 2 1 6292
orotate phosphoribosyltransferase activity 6.3568E-4 2 2 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle