From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.650832156998] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
receptor complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
signal recognition particle receptor complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
rough endoplasmic reticulum | 3.811E-3 | 2 | 12 | 1 | 6292 |
rough endoplasmic reticulum membrane | 3.811E-3 | 2 | 12 | 1 | 6292 |
endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
integral to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
intrinsic to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein localization in organelle | 5.5711E-4 | 2 | 149 | 2 | 6292 |
protein targeting | 1.3892E-3 | 2 | 235 | 2 | 6292 |
intracellular protein transport | 1.6363E-3 | 2 | 255 | 2 | 6292 |
protein transport | 1.8213E-3 | 2 | 269 | 2 | 6292 |
establishment of protein localization | 1.8485E-3 | 2 | 271 | 2 | 6292 |
cellular protein localization | 1.8898E-3 | 2 | 274 | 2 | 6292 |
cellular macromolecule localization | 2.0305E-3 | 2 | 284 | 2 | 6292 |
protein localization | 2.3118E-3 | 2 | 303 | 2 | 6292 |
macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
SRP-dependent cotranslational protein targeting to membrane | 6.6645E-3 | 2 | 21 | 1 | 6292 |
cotranslational protein targeting to membrane | 7.6148E-3 | 2 | 24 | 1 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ribonucleoprotein binding | 1.0611E-6 | 2 | 7 | 2 | 6292 |
signal recognition particle binding | 6.3568E-4 | 2 | 2 | 1 | 6292 |
guanyl ribonucleotide binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |
GTP binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |
guanyl nucleotide binding | 5.7138E-3 | 2 | 18 | 1 | 6292 |