| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.665278039928] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| late endosome membrane | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| pre-autophagosomal structure | 2.859E-3 | 2 | 9 | 1 | 6292 |
| peripheral to membrane of membrane fraction | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| late endosome | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| endosomal part | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| endosome membrane | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| autophagy | 4.3504E-5 | 2 | 42 | 2 | 6292 |
| microautophagy | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| cellular catabolic process | 4.3405E-3 | 2 | 415 | 2 | 6292 |
| retrograde transport, endosome to Golgi | 6.0308E-3 | 2 | 19 | 1 | 6292 |
| catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phosphoinositide binding | 3.3651E-5 | 2 | 37 | 2 | 6292 |
| phospholipid binding | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| lipid binding | 6.1895E-5 | 2 | 50 | 2 | 6292 |
| phosphatidylinositol-3,4-bisphosphate binding | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| phosphatidylinositol-3-phosphate binding | 6.0308E-3 | 2 | 19 | 1 | 6292 |