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Proxl Demo Project


Project Information
Title:
Proxl Demo Project
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Abstract:
Welcome to the ProXL demo project! You are accessing this project through the Public Access feature of ProXL, so not all options are available. Under "Explore Data", you may view sample protein cross-linking data generated by disparate software pipelines, including Kojak, Crux (search-for-xlinks), pLink, StavroX, and XQuest.
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Notes:
For help using or obtaining ProXL, click the help icon (?) at the top-right of any page.
Please email Michael Riffle <mriffle@uw.edu> with any questions, comments, or requests for support using or setting up ProXL on your own computer.
Explore Data
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
Crux (search-for-xlinks) search -- Yeast γ-Tubulin Complex (22)
Linker: dss
Search Program:
Crux 2.1
Upload: 2016-03-28 00:46:17
FASTA file: gTuSC-parsimonious-plusRev.fasta
Additional files:
search-for-xlinks.params.txt
Comments:
Command line: ./crux search-for-xlinks --cmod 57.02146:C:100:F:F ../stavrox/Q_2013_1010_RJ_07.mzML ../stavrox/gTuSC-parsimonious-plusRev.fasta K:K,nterm:K 138.0680742 (2016-03-28)
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
Kojak demo search -- Yeast γ-Tubulin Complex (21)
Linker: dss
Search Programs:
kojak 1.3.7-dev
percolator 2.08
Upload: 2016-03-25 21:45:27
FASTA file: gTuSC-parsimonious-plusRev.fasta
Additional files:
Kojak-1.3.7-dev-OP-parsi.conf
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
pLink demo search -- Yeast γ-Tubulin Complex (20)
Linker: bs3
Search Program:
pLink Version Unknown
Upload: 2016-03-25 21:16:22
FASTA file: gTuSC-parsimonious-plusRev.fasta
Additional files:
pLink.ini
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
xQuest demo search -- Yeast γ-Tubulin Complex (19)
Linker: dss
Search Program:
xquest 1.1
Upload: 2016-03-25 20:59:24
FASTA file: gTuSC-parsimonious-plusRev.fasta
Additional files:
xquest.def
xproph.def
[Stats/QC] [Peptides] [Proteins] [Image] [Structure]
StavroX demo search -- Yeast γ-Tubulin Complex (43)
Linker: dss
Search Program:
StavroX 3
Upload: 2017-07-01 00:08:20
FASTA file: gTuSC-parsimonious-plusRev.fasta
Cutoffs Applied On Import:
PSM Cutoff: FDR 0.05
Additional files:
properties.ssf
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