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Protein Overview: gi|6996266, gi|1...

General Information:
Name(s) found: gi|6996266 [NCBI NR]
gi|15231193 [NCBI NR]
gi|11357925 [NCBI NR]
Description(s) found:
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  • gi|6996266|emb|CAB75492.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15231193|ref|NP_190149.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T47503 hypothetical protein F9K21.210 - Arabidopsis thaliana [NCBI NR]
  • (Q9M1E4) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11357925|pir||T47503 hypothetical protein F9K21.210 - Arabidopsis thalianagi|15231193|ref|NP_190149.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA recognition motif (RRM)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:16759736-16764175 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / nucleic acid binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • CCR4-NOT transcription complex subunit 4 OS=Arabidopsis thaliana GN=F9K21.210 PE=4 SV=1 [ARATH-contam.fasta]
  • Putative uncharacterized protein F9K21.210 OS=Arabidopsis thaliana GN=F9K21.210 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 989 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    zinc ion binding [IEA]
    RNA binding [ISS]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDYGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI MDMAEKDQSE GRCPACRTPY  60
   61 DKEKIVGMTV DQERLASEGN MDRKKIQKSK PKSSDGRKPL TSVRVVQRNL VYIVGLPLNL 120
  121 ADEDLLQRKE YFGQYGKVLK VSMSRTATGL IQQFPNNTCS VYITYGKEEE AIRCIQSVHG 180
  181 FILDGKALKA CFGTTKYCHA WLRNVACNNQ DCLYLHEVGS QEDSFTKDEI ISAHTRVQQI 240
  241 TGATNTMQYR SGSMLPPPLD AYTSDSSTGN PIAKVPSSTS VSAPKSSPPS GSSGKSTALP 300
  301 AAASWGARLT NQHSLATSAL SNGSLDNQRS TSENGTLATS TVVTKAANGP VSSSNSLQKA 360
  361 PLKEEIQSLA EKSKPGVLKP LQQKIVLDPE SKRTTSPNRD PSSNQISCLV ESSYNSRVID 420
  421 KPSAVENSLE HTSEIAEDVF DVGKLSADVA WMGITTNSRD ETPGVPVVIG THCDLGSITQ 480
  481 SDNDVQNLEQ CRKQSPTNTY AEADISLNGI HGSRPEWDWR SGLQSQIDVK EPLEVNDFSS 540
  541 FNNNRRGIAE AVSHSTSKFS SSISILDSNH LASRSFQNRE TSCGMDSKTG SSFEIGSDRL 600
  601 HLPNGFSEKA MSNMEHSLFA NEGRSNIQNT EDDIISNILD FDPWDESLTS QHNFAKLLGQ 660
  661 SDHRASTLES SNLLKQHNDQ SRFSFARHEE SNSQAYDNRS YSIYGQLSRD QPLQEFGANR 720
  721 DMYQDKLGSQ NGFASNYSGG YEQFATSPGL SSYKSPVART QVSAPPGFSA PNRLPPPGFS 780
  781 SHQRGDLSSD IASGTRLLDS ANLLRNAYHV PPPSGNLNAA GDIEFIDPAI LAVGRGRLHN 840
  841 GMETADFDLR SGFSSQLNSF DNDARLQLLA QRSLAAQQVN GFHDPRNVNN FSSSFSDPYG 900
  901 ISSRPTDQTQ GTGLSPFTQL PRQASANPLL SNGHWDNKWN EPQSGNNLGI TQLLRNERMG 960
  961 FNDNVYSGFE EPKFRRPGPG DPYNRTYGI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 32.69897 Not-4 N-terminal RING finger domain
    2 View Details [99..196] PSI-BLAST 27.39794 Solution structure of the RNA recognition motif of CNOT4
    3 View Details [197..396] deduced N/A No confident structure predictions are available.
    4 View Details [397..503] MSA 3.306992 View MSA. No confident structure predictions are available.
    5 View Details [504..658] MSA 5.286992 View MSA. No confident structure predictions are available.
    6 View Details [659..751] deduced N/A No confident structure predictions are available.
    7 View Details [752..820] deduced N/A No confident structure predictions are available.
    8 View Details [821..989] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle