YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|17063173, gi|...

General Information:
Name(s) found: gi|30697455 [NCBI NR]
gi|27764908 [NCBI NR]
gi|17063173 [NCBI NR]
gi|10177321 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|30697455|ref|NP_200906.2| nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|27764908|gb|AAO23575.1| At5g60980/MSL3_100 [Arabidopsis thaliana] [NCBI NR]
  • gi|17063173|gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] [NCBI NR]
  • gi|10177321|dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FME2) Similarity to RNA-binding protein (AT5g60980/MSL3_100) [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|27764908|gb|AAO23575.1| At5g60980/MSL3_100 [Arabidopsis thaliana]gi|17063173|gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana]gi|30697455|ref|NP_200906.2| nuclear transport factor 2 (NTF2) family [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nuclear transport factor 2 (NTF2) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | chr5:24561214-24563253 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / nucleic acid binding / protein transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g60980/MSL3_100 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g60980/MSL3_100 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:24543988-24546027 FORWARD LENGTH=460 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT5g60980/MSL3_100 OS=Arabidopsis thaliana GN=At5g60980 PE=2 SV=1 [ARATH-contam.fasta]
  • AT5g60980/MSL3_100 OS=Arabidopsis thaliana GN=At5g60980 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 460 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleocytoplasmic transport [ISS]
    transport [IEA]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ  60
   61 AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT GNDNVRKKFS QSFFLAPQDK 120
  121 GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE 180
  181 EDLDNVAEVY DPSDKDEGVV VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS 240
  241 PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL 300
  301 PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD 360
  361 RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG RGGGGRGGYG RGGGEFSGRP 420
  421 KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 39.09691 Nuclear transport factor-2 (NTF2)
    2 View Details [137..385] PSI-BLAST 46.522879 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    3 View Details [386..460] FFAS03 1.17 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  1.02236648440434 bayes_pls_golite062009
  • binding
    		•  0.734272307307889 bayes_pls_golite062009
  • protein transporter activity
    		•  0.48055198672045 bayes_pls_golite062009
  • transporter activity
    		•  0.258106613266757 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  2.10830442385058 bayes_pls_golite062009
  • binding
    		•  1.8541691379227 bayes_pls_golite062009
  • protein binding
    		•  0.802085345859498 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.727288287394927 bayes_pls_golite062009
  • mRNA binding
    		•  0.0988424523768603 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle