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Protein Overview: gi|5430760, gi|1...

General Information:
Name(s) found: gi|5430760 [NCBI NR]
gi|28827672 [NCBI NR]
gi|26451230 [NCBI NR]
gi|25405302 [NCBI NR]
gi|15222132 [NCBI NR]
Description(s) found:
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  • gi|5430760|gb|AAD43160.1|AC007504_15 Putative ribosomal protein [Arabidopsis thaliana] [NCBI NR]
  • gi|28827672|gb|AAO50680.1| putative 40S ribosomal protein S17 [Arabidopsis thaliana] [NCBI NR]
  • gi|26451230|dbj|BAC42717.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||D96530 probable ribosomal protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222132|ref|NP_175365.1| emb1129 (embryo defective 1129); structural constituent of ribosome [Arabidopsis thaliana] [NCBI NR]
  • (Q9XIA6) Putative ribosomal protein (Hypothetical protein) (Putative 40S ribosomal protein S17) [athaliana3702.FASTAC.txt]
  • Putative ribosomal protein [Arabidopsis thaliana]gi|26451230|dbj|BAC42717.1| unknown protein [Arabidopsis thaliana]gi|28827672|gb|AAO50680.1| putative 40S ribosomal protein S17 [Arabidopsis thaliana]gi|25405302|pir||D96530 probable ribosomal protein [i [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ribosomal protein S17 family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB1129 | EMB1129 (EMBRYO DEFECTIVE 1129); structural constituent of ribosome | chr1:18286824-18287311 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative 40S ribosomal protein S17 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • EMB1129; structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative ribosomal protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like protein | chr1:18283156-18283643 FORWARD LENGTH=116 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative 40S ribosomal protein S17 OS=Arabidopsis thaliana GN=F13F21.17 PE=3 SV=1 [ARATH-contam.fasta]
  • Nucleic acid-binding, OB-fold-like protein OS=Arabidopsis thaliana GN=F13F21.17 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 116 amino acids

    Gene Ontology:
    Cellular Component: cytosolic small ribosomal subunit [ISS]
    ribosome [IEA]
    intracellular [IEA]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPVIGTVVS NKMQKSVVVA VDRLFHNKIY NRYVKRTSKF MAHDDKDACN IGDRVKLDPS  60
   61 RPLSKNKHWI VAEIIKKARI YSPKAAAAAV SASASASSAS TTDSSAQSQI PPSSTS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] PSI-BLAST 26.522879 No description for 1vs5Q was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.45319063235379 bayes_pls_golite062009
  • structural molecule activity
    		•  6.87843523680097 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.61313484113692 bayes_pls_golite062009
  • DNA binding
    		•  1.87254683997276 bayes_pls_golite062009
  • binding
    		•  1.81248034004657 bayes_pls_golite062009
  • RNA binding
    		•  1.76502371106766 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.11569046031534 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  1.02592019321551 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.562603623565981 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.51569543713363 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.474251377131502 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.47336621289748 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.47336621289748 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.32253752994732 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.22548557495593 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0185639841733248 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle