Protein Overview: rod-PA

General Information:
Name(s) found:	rod-PA / FBpp0085156 [FlyBase]
Description(s) found: SHOW ONLY BEST	gi\|23172775\|gb\|AAF57162.2\| rough deal [Drosophila melanogaster] [NCBI NR] gi\|17136442\|ref\|NP_476705.1\| rough deal [Drosophila melanogaster] [NCBI NR] The gene rough deal is referred to in FlyBase by the symbol Dmel\rod (CG1569, FBgn0003268). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:27406394..27413861. It has the cytological map location 100C6-100C7. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: mitotic sister chromatid segregation. 19 alleles are reported. The phenotypes of these alleles are annotated with: eye; mitotic anaphase; intersegmental nerve; nuclear chromosome; spermatocyte; meiotic cell cycle. It has one annotated transcript and one annotated polypeptide. [FlyBase] >CG1569-PA translation from_gene[CG1569 rod FBgn0003268] seq_release:3 mol_weight=239696 cds_boundaries:(3R:27,396,111..27,403,192[+]) aa_length:2089 transcript_info:[CG1569-RA seq_release:3] gene_info:[gene symbol:rod FBgn0003268 gene_boundaries:(3R:2 [hmr_yeast5_DM3-1_pombe.fasta] (Q9V9W7) CG1569 protein [DrosMelano7227.FASTAC.txt] CG1569-PA [Drosophila melanogaster]gi\|17136442\|ref\|NP_476705.1\| CG1569-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas] type=protein; loc=3R:join(27406745..27406840,27406903..27407240,27407330..27407677,27407738..27407937,27408002..27408210,27408266..27408966,27409027..27410294,27410356..27410750,27410811..27411319,27411378..27411747,27411805..27412069,27412140..27412965,2 [fly-100309-contam.fasta] CG1569-PA [Drosophila melanogaster] [nr-271106-contam.fasta] rough deal CG1569-PA [Drosophila melanogaster] [nr-271106-contam.fasta] type=protein; loc=3R:join(27406745..27406840,27406903..27407240,27407330..27407677,27407738..27407937,27408002..27408210,27408266..27408966,27409027..27410294,27410356..27410750,27410811..27411319,27411378..27411747,27411805..27412069,27412140..27412965,27413025..27413658,27413719..27413829); ID=FBpp0085156; name=rod-PA; parent=FBgn0003268,FBtr0085795; dbxref=FlyBase:FBpp0085156,FlyBase_Annotation_IDs:CG1569-PA,GB_protein:AAF57162.2,REFSEQ:NP_476705,GB_protein:AAF57162; MD5=e65bc4cfd797167f7451cbee7b65b383; length=2089; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta] type=protein; loc=3R:join(27406745..27406840,27406903..27407240,27407330..27407677,27407738..27407937,27408002..27408210,27408266..27408966,27409027..27410294,27410356..27410750,27410811..27411319,27411378..27411747,27411805..27412069,27412140..27412965,27413025..27413658,27413719..27413829); ID=FBpp0085156; name=rod-PA; parent=FBgn0003268,FBtr0085795; dbxref=FlyBase:FBpp0085156,FlyBase_Annotation_IDs:CG1569-PA,GB_protein:AAF57162.2,REFSEQ:NP_476705,GB_protein:AAF57162; MD5=e65bc4cfd797167f7451cbee7b65b383; length=2089; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta] Rough deal OS=Drosophila melanogaster GN=rod PE=2 SV=2 [UniProt_drosophila_07-01-2011_reversed.fasta] type=protein; loc=3R:join(27406745..27406840,27406903..27407240,27407330..27407677,27407738..27407937,27408002..27408210,27408266..27408966,27409027..27410294,27410356..27410750,27410811..27411319,27411378..27411747,27411805..27412069,27412140..27412965,27413025..27413658,27413719..27413829); ID=FBpp0085156; name=rod-PA; parent=FBgn0003268,FBtr0085795; dbxref=FlyBase:FBpp0085156,FlyBase_Annotation_IDs:CG1569-PA,GB_protein:AAF57162.2,REFSEQ:NP_476705,GB_protein:AAF57162,FlyMine:FBpp0085156,modMine:FBpp0085156; MD5=e65bc4cfd797167f7451cbee7b65b383; length=2089; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta] type=protein; loc=3R:join(31581023..31581118,31581181..31581518,31581608..31581955,31582016..31582215,31582280..31582488,31582544..31583244,31583305..31584572,31584634..31585028,31585089..31585597,31585656..31586025,31586083..31586347,31586418..31587243,31587303..31587936,31587997..31588107); ID=FBpp0085156; name=rod-PA; parent=FBgn0003268,FBtr0085795; dbxref=FlyBase:FBpp0085156,FlyBase_Annotation_IDs:CG1569-PA,GB_protein:AAF57162.2,REFSEQ:NP_476705,GB_protein:AAF57162,FlyMine:FBpp0085156,modMine:FBpp0085156; MD5=e65bc4cfd797167f7451cbee7b65b383; length=2089; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta] type=protein; loc=3R:join(31581023..31581118,31581181..31581518,31581608..31581955,31582016..31582215,31582280..31582488,31582544..31583244,31583305..31584572,31584634..31585028,31585089..31585597,31585656..31586025,31586083..31586347,31586418..31587243,31587303..31587936,31587997..31588107); ID=FBpp0085156; name=rod-PA; parent=FBgn0003268,FBtr0085795; dbxref=FlyBase:FBpp0085156,FlyBase_Annotation_IDs:CG1569-PA,GB_protein:AAF57162.2,REFSEQ:NP_476705,GB_protein:AAF57162,FlyMine:FBpp0085156,modMine:FBpp0085156; MD5=e65bc4cfd797167f7451cbee7b65b383; length=2089; release=r6.07; species=Dmel; [fly-08202015-contam.fasta] Rough deal OS=Drosophila melanogaster GN=rod PE=1 SV=2 [DROME.fasta.20160308] FBpp0085156 type=protein; loc=3R:join(31581023..31581118,31581181..31581518,31581608..31581955,31582016..31582215,31582280..31582488,31582544..31583244,31583305..31584572,31584634..31585028,31585089..31585597,31585656..31586025,31586083..31586347,31586418..31587243,31587303..31587936,31587997..31588107); ID=FBpp0085156; name=rod-PA; parent=FBgn0003268,FBtr0085795; dbxref=FlyBase:FBpp0085156,FlyBase_Annotation_IDs:CG1569-PA,GB_protein:AAF57162.2,REFSEQ:NP_476705,GB_protein:AAF57162,FlyMine:FBpp0085156,modMine:FBpp0085156; MD5=e65bc4cfd797167f7451cbee7b65b383; length=2089; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta] [fly-122215-dmel-6-09-contam.fasta] type=protein; loc=3R:join(31581023..31581118,31581181..31581518,31581608..31581955,31582016..31582215,31582280..31582488,31582544..31583244,31583305..31584572,31584634..31585028,31585089..31585597,31585656..31586025,31586083..31586347,31586418..31587243,31587303..31587936,31587997..31588107); ID=FBpp0085156; name=rod-PA; parent=FBgn0003268,FBtr0085795; dbxref=FlyBase:FBpp0085156,FlyBase_Annotation_IDs:CG1569-PA,GB_protein:AAF57162.2,REFSEQ:NP_476705,GB_protein:AAF57162,UniProt/TrEMBL:Q9V9W7,FlyMine:FBpp0085156,modMine:FBpp0085156; MD5=e65bc4cfd797167f7451cbee7b65b383; length=2089; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
Organism:	Drosophila melanogaster
Length:	2089 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IDA] kinetochore microtubule [IDA][NAS] spindle [IDA] kinetochore [IDA] outer kinetochore of condensed chromosome [NAS]
Biological Process:	mitotic cell cycle spindle assembly checkpoint [NAS][TAS] mitotic sister chromatid segregation [IMP]
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSNFEASSL EDETISNIFS SRGIFQISSE EEVNKYPDVM ASVQCGKMVI GIDKSLLLLE  60
   61 DELVAKCSFL AFGAAIEAIA ISSSGNLIVC GLSDGEVHGV FIKGLLLFSV AVNLEDVSLT 120
  121 GGTFRSIHQL DQRFYFTCKN GSIYSLSDID ETCLETLGNM SLNENETIAC EKALLEDVTI 180
  181 QRLSKGRSSC SVDCAVLLKR LLTGNISAEN NQDDLEAQPG LVITGDQSTM NFRNAANDVT 240
  241 RINLPAQYGS LKQIFNLEHY IIALTDSGHL VEICPYTRTV YMCQTTQQKN LLIEDLLVME 300
  301 CSEDNIELLV LTKSTAEGRF IKIVEYPTLN VKNEVEVPDH AWLVRQPKCA VNLYYLAAKE 360
  361 VNQSSIPSVV EMMLVSETDP SDRFKKLICK GRLEEAEEFG KQFELCLQPI YEAKAKRILV 420
  421 ELCNSNSQNV DTKFQDLLQL LSQVESKAFI KSHRMINLNS RHILERYLHE VKKRLTFEDD 480
  481 EEDMLEIDEQ LHRLKTLAII DPYECNTDWQ KFIYDNNLVR MVKSLFNTDM PTACLIWRRH 540
  541 SSSILPLLNE DELRTLLGFI PSNTKPFNVV QWLRQFIPMV SNTHPSIMPF ITDWSIEMTR 600
  601 NLQYSPHWPD IGLEFCTKIL DIFEEIQFTY SDVRRQQERN VGKLRDLVNA LQDLSVLKTN 660
  661 YNMGFTLDNY MQDSIDATAL SILQHVQLDK LQRLVKNFMY PIFQEKGRQP LDVIKQYISQ 720
  721 LVASRLSSSS WLDRAMACIE LLHNEDSRLE CALSVLQNAP VPWPDTLAPL IRLRASTHPL 780
  781 AVKINAEYEI QVIKIMKVKY GWPADSSDIN LELFMMRIVK LNLPDMLDDI SALTKAAPEL 840
  841 STSANFNCCY QMARRGQVEM AYEFFKKLNG EKNSKSAKEV VEIMANILEN SSSASFESDI 900
  901 KVQEHLNVLE LFKLFLPHVE SVYERRYLVI KHRFRLRKFG ILLSCSSELI PLHRRHCLLD 960
  961 EAIERIIERA QATLNVSAFI ASEISELCTA LGLPKVFGLH RICQRIGCLP LSCALAYHVV1020
 1021 SFVDCVPANA GEFVNLALEL LVQQIESAKG KNQETASSLQ LINENDPLSF YLAYELLTSA1080
 1081 LLHESSRRHD LVELIKYIRV AVIHYPLDAI KSHYDGKEQA VNEHICRALD GISVALGETT1140
 1141 INFSCALNGS FDVKTLTVPT TTKKRYSVSM FDEVEVQPIQ QQPQKKSVGG RMAIVKFLAR1200
 1201 TLLLMVIETE PNNSLLMQVR NELPENTKAD VESACADFFL SLEHLTKVKE HDAWYVMSQY1260
 1261 LLDFQKQNCR TKRIINEGFI TLQLRRIFRN AMGSKDVNFI ELFTMLVVDS EALALLEKLS1320
 1321 VEVKTDLQKI NFLTLSAMYH EHIEDLDSVH MIRTKRLKLF YYLEFCQQDH RIKGKFNADM1380
 1381 DNIEDLLKEF HNKQLDVQLL ERMSKDFGFD YQKILITQIL SILSAQELRF EVKRDTFGDE1440
 1441 ELVMLSSAQE MRDMCQPYIN EINNVELFTS KLKHFIEDIN IYFYELYMCV INILMYFDSA1500
 1501 PKEMEIWMNI LHFLRHKMIT RRRNRPGQVE TDTWLKSQRE NGVMPKISRY RLPFKPIVEQ1560
 1561 PLKDILDSEL NVDNCQSWFP LIQMYTALKG SKDSSQNCDY FCMSAVKNSI SEYKSKNDSE1620
 1621 SWSLHPTNNA FLQSILRLVE KVNNPNKAFL ILYFVSNYAR DGADQVEASY ECWKFVKEKG1680
 1681 HLITDPKSRE QVAKVKRRYP IQKTQHLLYV YGLTDEKLLR QVENPTELIQ ALYHHELILK1740
 1741 SSKVDINALV AEIAKLHDLC LATIQYRLLQ KWLALTMESA GDGTILEETF MEEQNWPEQA1800
 1801 NGAESSNSQD ASENVNRAFY ILSSWPKAEA VKFLVGLIFK GGSVNTSTQL QMYECYSKLN1860
 1861 DGSNSFTNTI SQRQFISIKC VHELKALGYK SNLEKFSDDH CNKIDILKMI WQRNAQNPLS1920
 1921 LEVMANICLG FDIHLPQIWN GILKRMVMFH MVRELNALLD VLSCRPHLLH LDGLAQAWDY1980
 1981 VLCHPLQNAV ELRSFKQEEV LHKTLLRLQG CPVVHALNLL QFAQLCIVVH RPHMAASLLS2040
 2041 FCQSSEQRQK IKKMIHSHPV ENLRQQILDL EDAGILPVVL NFALKELNL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..248]	deduced	N/A	No confident structure predictions are available.
2	View Details	[249..359]	deduced	N/A	No confident structure predictions are available.
3	View Details	[360..405]	MSA	1.009989	View MSA. No confident structure predictions are available.
4	View Details	[406..503]	deduced	N/A	No confident structure predictions are available.
5	View Details	[504..760]	MSA	1.010959	View MSA. No confident structure predictions are available.
6	View Details	[761..868]	deduced	N/A	No confident structure predictions are available.
7	View Details	[869..1062]	deduced	N/A	No confident structure predictions are available.
8	View Details	[1063..1159]	deduced	N/A	No confident structure predictions are available.
9	View Details	[1160..1368]	deduced	N/A	No confident structure predictions are available.
10	View Details	[1369..1595]	MSA	1.010963	View MSA. No confident structure predictions are available.
11	View Details	[1596..1795]	deduced	N/A	No confident structure predictions are available.
12	View Details	[1796..1862]	deduced	N/A	No confident structure predictions are available.
13	View Details	[1863..2089]	deduced	N/A	No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.86

Protein Overview: rod-PA

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: