YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YDR170W-A

General Information:
Name(s) found: YDR170W-A [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|74627190|sp|Q03964.1|YD17A_YEAST RecName: Full=Transposon Ty1-DR2 Gag polyprotein; AltName: Full=Gag-p49; AltName: Full=Transposon Ty1 protein A; Short=TY1A; Short=TYA; AltName: Full=p58; Contains: RecName: Full=Capsid protein; Short=CA; AltName: Full= [NCBI NR]
  • gi|6320375|ref|NP_010455.1| Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon; Ydr170w-ap [Saccharomyces [NCBI NR]
  • gi|1289284|emb|CAA86697.1| unknown [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S49765 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon TY1A_DR2 [NCBI NR]
  • Transposon Ty1-DR2 Gag polyprotein OS=Saccharomyces cerevisiae GN=TY1A-DR2 PE=3 SV=1 [Swiss-Prot]
  • TY1A TY1A protein [mips]
  • - TY1A - TY1A protein [mips]
  • Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon [SGD]
  • YDR170W-A, Chr IV from 803188-804510 [yeast_orfs2]
  • Chr IV from 803188-804510 [yeastorf3.fasta]
  • >Q03964 (Q03964) Hypothetical protein [4932.FASTACCERV.txt]
  • YDR170W-A SGDID:S0007227, Chr IV from 803189-804511, Ty ORF [yeastflysequest.fasta]
  • YDR170W-A SGDID:S0007227, Chr IV from 803190-804512, Ty ORF [10112005cervSGD.fasta]
  • Ty ORF [Saccharomyces cerevisiae]gi|1289284|emb|CAA86697.1| unknown [Saccharomyces cerevisiae]gi|1072508|pir||S49765 TyA protein - yeast (Saccharomyces cerevisiae) retrotransposon TY1A_DR2 [nrdb_11152004_Chlamydomonas]
  • (Q03964) Hypothetical protein TYA [cerv4932.FASTAC]
  • YDR170W-A SGDID:S000007227, Chr IV from 803190-804512, transposable_element_gene, "Ty ORF" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YDR170W-A SGDID:S000007227, Chr IV from 803192-804514, transposable_element_gene, "Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part [yeast-contam.fasta]
  • YDR170W-A SGDID:S000007227, Chr IV from 803193-804515, transposable_element_gene, "Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon; Ydr170w-ap [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YDR170W-A SGDID:S000007227, Chr IV from 803193-804515, transposable_element_gene, "Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon" [yeast-bovrabprots.fasta]
  • YDR170W-A SGDID:S000007227, Chr IV from 803192-804514, transposable_element_gene, "Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon" [yeast-contam_custom.fasta]
  • [chemostatdb.fasta]
  • Transposon Ty1-DR2 Gag polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1A-DR2 PE=3 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YDR170W-A SGDID:S000007227, Chr IV from 803195-804517, Genome Release 64-1-1, transposable_element_gene, "Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon" [yeast-030211-contam.fasta]
  • YDR170W-A SGDID:S000007227, Chr IV from 803195-804517, Genome Release 64-2-1, transposable_element_gene, "Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag; YDR170W-A is part of a mutant retrotransposon; distribution in the cytoplasm becomes irregular rather than punctate upon DNA replication stress" [20141208_orf_trans.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: retrotransposon nucleocapsid [ISSLink to PubMed article]
    Biological Process: transposition, RNA-mediated [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    protein binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVQTTQ DPLDISASKT EECEKVFTQA NSQQPTTPPS  60
   61 AAVPENHHHA SPQAAQVPLP QNGPYPQQRM MTPQQANISG WPVYGHPSLM PYPPYQMSPM 120
  121 YAPPGAQSQF TQYPQYVGTH LNTPSPESGN SFPDSSSAKS NMTSTNQHVR PPPILTSPND 180
  181 FLNWVKIYIK FLQNSNLGDI IPTATRKAVR QMTDDELTFL CHTFQLFALS QFLPTWVKDI 240
  241 LSVDYTDIMK ILSKSINKMQ SDTQEVNDIT TLANLHYNGS TPADAFEAEV TNILDRLKNN 300
  301 GIPINNKVAC QFIMRGLSGE YKFLRYARHR YIHMTVADLF SDIHSMYEEQ QESKRNKSTY 360
  361 RRSPSDEKKD SRTYTNTTKP KSITRNSQKP NNSQSRTARA HNVSTSNNFP GPDNDLIRGS 420
  421 TTEPIQLKNK HDLHLRPGTY

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Ho Y, et al. (2002) BUR2 CDC25 CDC28 CKI1 CKS1 CLB2 CLB3 CLB5 CLN1 GCR2 GIN4 HOM3 HYP2 IRA1 IRA2 MYO2 MYO4 NAP1 PMD1 PRS2 PRS3 PRS5 RIM11 TPS1 TSL1 YDR170W-A YER138C YER160C YJR027W YJR028W
    View Details Qiu et al. (2008) YDR170W-A YDR210C-C YDR210C-D YER160C YOR343W-A YOR343W-B

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YDR170W-A Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..175] Pfam 77.886057 No description for PF01021.10 was found. No confident structure predictions are available.
    2 View Details [176..329] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [330..440] MSA 1.007969 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle