YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108809499, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.82
Transmembrane Helix	49	73	0.84
Non-Cytoplasmic	74	80	0.66
Transmembrane Helix	81	100	0.86
Cytoplasmic	101	106	0.70
Transmembrane Helix	107	128	0.78
Non-Cytoplasmic	129	137	0.76
Transmembrane Helix	138	159	0.90
Cytoplasmic	160	166	0.81
Transmembrane Helix	167	189	0.87
Non-Cytoplasmic	190	202	0.81
Transmembrane Helix	203	222	0.93
Cytoplasmic	223	229	0.83
Transmembrane Helix	230	251	0.91
Non-Cytoplasmic	252	273	0.82
Transmembrane Helix	274	293	0.77
Cytoplasmic	294	359	0.90
Transmembrane Helix	360	381	0.93
Non-Cytoplasmic	382	388	0.80
Transmembrane Helix	389	409	0.94
Cytoplasmic	410	417	0.88
Transmembrane Helix	418	438	0.94
Non-Cytoplasmic	439	447	0.76
Transmembrane Helix	448	468	0.95
Cytoplasmic	469	472	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPLPIWKYH AMSTQSAELD TAPPSPAHPS ELIYHLEDRP PLPQTLFAAC QHLLAMFVAV  60
   61 ITPGLLICQA LGLPAEDTQR IISMSLFASG LASLLQIKTW GPVGSGLLSI QGTSFNFVSP 120
  121 LIMGGLALKN GGADIPTMMA ALFGTLMVAS CTEILLSHVL HLARRIITPL VSGIVVMIIG 180
  181 LSLIQVGLTS IGGGYGAMSD NTFGAPKNLL LAGAVLGVII LLNRQRNPYL RVASLVIAMA 240
  241 VGYLLAWALG MLPESRPVVD TALITIPTPL YYGLSFDWNL LIPLMLIFMV TSLETIGDIT 300
  301 ATSDVSEQPV RGPLYMKRLK GGVLANGLNS MLSAIFNTFP NSCFGQNNGV IQLTGVASRY 360
  361 VGFVVAIMLI ILGLFPAVAG FVQHIPEPVL GGATLVMFGT IAASGVRIVS RETLNRRAIM 420
  421 IMALSLAVGM GVAQQPLILQ FAPDWIKTLF SSGIAAGGIT AIVLNLLFPQ EK