YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EG13065
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.88
Transmembrane Helix	27	49	0.87
Non-Cytoplasmic	50	55	0.75
Transmembrane Helix	56	76	0.90
Cytoplasmic	77	84	0.72
Transmembrane Helix	85	104	0.92
Non-Cytoplasmic	105	116	0.79
Transmembrane Helix	117	139	0.90
Cytoplasmic	140	148	0.68
Transmembrane Helix	149	168	0.93
Non-Cytoplasmic	169	184	0.81
Transmembrane Helix	185	204	0.92
Cytoplasmic	205	211	0.77
Transmembrane Helix	212	233	0.91
Non-Cytoplasmic	234	255	0.85
Transmembrane Helix	256	279	0.81
Cytoplasmic	280	337	0.75
Transmembrane Helix	338	360	0.83
Non-Cytoplasmic	361	366	0.56
Transmembrane Helix	367	388	0.91
Cytoplasmic	389	396	0.75
Transmembrane Helix	397	416	0.61
Non-Cytoplasmic	417	423	0.53
Transmembrane Helix	424	446	0.71
Cytoplasmic	447	466	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDINHAGSD LIFELEDRPP FHQALVGAIT HLLAIFVPMV TPALIVGAAL QLSAETTAYL  60
   61 VSMAMIASGI GTWLQVNRYG IVGSGLLSIQ SVNFSFVTVM IALGSSMKSD GFHEELIMSS 120
  121 LLGVSFVGAF LVVGSSFILP YLRRVITPTV SGIVVLMIGL SLIKVGIIDF GGGFAAKSSG 180
  181 TFGNYEHLGV GLLVLIVVIG FNCCRSPLLR MGGIAIGLCV GYIASLCLGM VDFSSMRNLP 240
  241 LITIPHPFKY GFSFSFHQFL VVGTIYLLSV LEAVGDITAT AMVSRRPIQG EEYQSRLKGG 300
  301 VLADGLVSVI ASAVGSLPLT TFAQNNGVIQ MTGVASRYVG RTIAVMLVIL GLFPMIGGFF 360
  361 TTIPSAVLGG AMTLMFSMIA IAGIRIIITN GLKRRETLIV ATSLGLGLGV SYDPEIFKIL 420
  421 PASIYVLVEN PICAGGLTAI LLNIILPGGY RQENVLPGIT SAEEMD