YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82546077, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.92
Transmembrane Helix	39	63	0.84
Non-Cytoplasmic	64	69	0.78
Transmembrane Helix	70	90	0.89
Cytoplasmic	91	96	0.78
Transmembrane Helix	97	118	0.84
Non-Cytoplasmic	119	127	0.72
Transmembrane Helix	128	147	0.92
Cytoplasmic	148	156	0.76
Transmembrane Helix	157	179	0.87
Non-Cytoplasmic	180	192	0.79
Transmembrane Helix	193	212	0.94
Cytoplasmic	213	219	0.84
Transmembrane Helix	220	241	0.91
Non-Cytoplasmic	242	259	0.93
Transmembrane Helix	260	281	0.87
Cytoplasmic	282	349	0.95
Transmembrane Helix	350	371	0.91
Non-Cytoplasmic	372	378	0.80
Transmembrane Helix	379	399	0.94
Cytoplasmic	400	407	0.88
Transmembrane Helix	408	428	0.94
Non-Cytoplasmic	429	438	0.77
Transmembrane Helix	439	458	0.96
Cytoplasmic	459	463	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSTLESEN AQPVAQTQNS ELIYRLEDRP PLPQTLFAAC QHLLAMFVAV ITPALLICQA  60
   61 LGLPAQDTQH IISMSLFASG VASIIQIKTW GPVGSGLLSI QGTSFNFVAP LIMGGTALKT 120
  121 GGADVPTMMA ALFGTLMLAS CTEMVISRVL HLARRIITPL VSGVVVMIIG LSLIQVGLTS 180
  181 IGGGYAAMSD NTFGAPKNLL LAGVVLALII LLNRQRNPYL RVASLVIAMA AGYALAWFMG 240
  241 MLPESNEPMT QELIMVPTPL YYGLGIEWSL LLPLMLVFMI TSLETIGDIT STSDVSEQPV 300
  301 SGPLYMKRLK GGVLANGLNS FVSAVFNTFP NSCFGQNNGV IQLTGVASRY VGFVVALMLI 360
  361 VLGLFPAVSG FVQHIPEPVL GGATLVMFGT IAASGVRIVS REPLNRRAIL IIALSLAVGL 420
  421 GVSQQPLILQ FAPEWLKNLL SSGIAAGGIT AIVLNLIFPP EKQ