YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238726124, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.83
Transmembrane Helix	38	62	0.83
Non-Cytoplasmic	63	69	0.68
Transmembrane Helix	70	89	0.86
Cytoplasmic	90	95	0.72
Transmembrane Helix	96	117	0.80
Non-Cytoplasmic	118	125	0.78
Transmembrane Helix	126	146	0.91
Cytoplasmic	147	154	0.79
Transmembrane Helix	155	178	0.85
Non-Cytoplasmic	179	191	0.81
Transmembrane Helix	192	211	0.94
Cytoplasmic	212	217	0.87
Transmembrane Helix	218	240	0.87
Non-Cytoplasmic	241	262	0.80
Transmembrane Helix	263	282	0.78
Cytoplasmic	283	348	0.91
Transmembrane Helix	349	370	0.93
Non-Cytoplasmic	371	377	0.80
Transmembrane Helix	378	398	0.94
Cytoplasmic	399	406	0.89
Transmembrane Helix	407	427	0.94
Non-Cytoplasmic	428	434	0.83
Transmembrane Helix	435	457	0.91
Cytoplasmic	458	461	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTQSAELDT PQQATTRPSE LIYRLEDRPP LAQTLFAACQ HLLAMFVAVI TPGLLICQAL  60
   61 GLPAEDTQRI ISMSLFASGL ASLLQIKTWG PIGSGLLSIQ GTSFNFVSPL IMGGLALKNG 120
  121 GADIPTMMAA LFGTLMVASC TEIILSRFLH LARRIITPLV SGIVVMIIGL SLIQVGLTSI 180
  181 GGGYGAMSDH TFGAPKNLLL AGAVLVVIIL LNRQRNPYLR VASLVIAMAV GYLLAWSLGM 240
  241 LPESRPVVDT ALITIPTPLY YGLSFDWNLL VPLMLIFMVT SLETIGDITA TSDVSEQPVH 300
  301 GPLYMKRLKG GVLANGLNSM LSAVFNTFPN SCFGQNNGVI QLTGVASRYV GFVVALMLIV 360
  361 LGLFPAVAGF VQHIPEPVLG GATLVMFGTI AASGVRIVSR ETLNRRAIMI MALSLAVGMG 420
  421 VAQQPLILQF APDWIKTLLS SGIAAGGITA IVLNLLFPQE K