YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45434755, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.80
Transmembrane Helix	46	70	0.84
Non-Cytoplasmic	71	77	0.65
Transmembrane Helix	78	97	0.85
Cytoplasmic	98	103	0.69
Transmembrane Helix	104	125	0.77
Non-Cytoplasmic	126	134	0.76
Transmembrane Helix	135	156	0.90
Cytoplasmic	157	163	0.81
Transmembrane Helix	164	186	0.87
Non-Cytoplasmic	187	199	0.81
Transmembrane Helix	200	219	0.93
Cytoplasmic	220	226	0.83
Transmembrane Helix	227	248	0.91
Non-Cytoplasmic	249	270	0.82
Transmembrane Helix	271	290	0.77
Cytoplasmic	291	356	0.90
Transmembrane Helix	357	378	0.93
Non-Cytoplasmic	379	385	0.80
Transmembrane Helix	386	406	0.94
Cytoplasmic	407	414	0.88
Transmembrane Helix	415	435	0.94
Non-Cytoplasmic	436	444	0.76
Transmembrane Helix	445	465	0.95
Cytoplasmic	466	469	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIWKYHAMS TQSAELDTAP PSPAHPSELI YHLEDRPPLP QTLFAACQHL LAMFVAVITP  60
   61 GLLICQALGL PAEDTQRIIS MSLFASGLAS LLQIKTWGPV GSGLLSIQGT SFNFVSPLIM 120
  121 GGLALKNGGA DIPTMMAALF GTLMVASCTE ILLSHVLHLA RRIITPLVSG IVVMIIGLSL 180
  181 IQVGLTSIGG GYGAMSDNTF GAPKNLLLAG AVLGVIILLN RQRNPYLRVA SLVIAMAVGY 240
  241 LLAWALGMLP ESRPVVDTAL ITIPTPLYYG LSFDWNLLIP LMLIFMVTSL ETIGDITATS 300
  301 DVSEQPVRGP LYMKRLKGGV LANGLNSMLS AIFNTFPNSC FGQNNGVIQL TGVASRYVGF 360
  361 VVAIMLIILG LFPAVAGFVQ HIPEPVLGGA TLVMFGTIAA SGVRIVSRET LNRRAIMIMA 420
  421 LSLAVGMGVA QQPLILQFAP DWIKTLFSSG IAAGGITAIV LNLLFPQEK