YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22124027, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.83
Transmembrane Helix	55	79	0.84
Non-Cytoplasmic	80	86	0.66
Transmembrane Helix	87	106	0.86
Cytoplasmic	107	112	0.70
Transmembrane Helix	113	134	0.78
Non-Cytoplasmic	135	143	0.76
Transmembrane Helix	144	165	0.90
Cytoplasmic	166	172	0.81
Transmembrane Helix	173	195	0.87
Non-Cytoplasmic	196	208	0.81
Transmembrane Helix	209	228	0.93
Cytoplasmic	229	235	0.83
Transmembrane Helix	236	257	0.91
Non-Cytoplasmic	258	279	0.82
Transmembrane Helix	280	299	0.77
Cytoplasmic	300	365	0.90
Transmembrane Helix	366	387	0.93
Non-Cytoplasmic	388	394	0.80
Transmembrane Helix	395	415	0.94
Cytoplasmic	416	423	0.88
Transmembrane Helix	424	444	0.94
Non-Cytoplasmic	445	453	0.76
Transmembrane Helix	454	474	0.95
Cytoplasmic	475	478	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIIKMPPL PIWKYHAMST QSAELDTAPP SPAHPSELIY HLEDRPPLPQ TLFAACQHLL  60
   61 AMFVAVITPG LLICQALGLP AEDTQRIISM SLFASGLASL LQIKTWGPVG SGLLSIQGTS 120
  121 FNFVSPLIMG GLALKNGGAD IPTMMAALFG TLMVASCTEI LLSHVLHLAR RIITPLVSGI 180
  181 VVMIIGLSLI QVGLTSIGGG YGAMSDNTFG APKNLLLAGA VLGVIILLNR QRNPYLRVAS 240
  241 LVIAMAVGYL LAWALGMLPE SRPVVDTALI TIPTPLYYGL SFDWNLLIPL MLIFMVTSLE 300
  301 TIGDITATSD VSEQPVRGPL YMKRLKGGVL ANGLNSMLSA IFNTFPNSCF GQNNGVIQLT 360
  361 GVASRYVGFV VAIMLIILGL FPAVAGFVQH IPEPVLGGAT LVMFGTIAAS GVRIVSRETL 420
  421 NRRAIMIMAL SLAVGMGVAQ QPLILQFAPD WIKTLFSSGI AAGGITAIVL NLLFPQEK