YRC Public Data Repository - Protein Structure Prediction

Protein:	YICE_ECOLI
Organism:	Escherichia coli
Length:	463 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YICE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67549423, gi\|... - gi\|67549423\|ref\|ZP_00427286.1\| Xanthine/uracil permease family [Burkholderia vietnamiensis G4], gi\|6...	267.0	[0..2]	[462..431]
gi\|68343719, gi\|... - gi\|70729420\|ref\|YP_259158.1\| xanthine/uracil permease family protein [Pseudomonas fluorescens Pf-5],...	239.0	[0..10]	[460..114]
gi\|77962012 - gi\|77962012\|ref\|ZP_00825839.1\| COG2233: Xanthine/uracil permeases [Yersinia mollaretii ATCC 43969]	232.0	[0..7]	[462..6]
gi\|22124027, gi\|... - gi\|22124027\|ref\|NP_667450.1\| transport protein, symporter [Yersinia pestis KIM], gi\|21956771\|gb\|AAM8...	232.0	[0..7]	[462..23]
gi\|82546077, gi\|... - gi\|82546077\|ref\|YP_410024.1\| putative transport protein [Shigella boydii Sb227], gi\|81247488\|gb\|ABB6...	232.0	[0..1]	[463..1]
gi\|238726124, gi... - gi\|77976736\|ref\|ZP_00832209.1\| COG2233: Xanthine/uracil permeases [Yersinia intermedia ATCC 29909], ...	231.0	[0..7]	[462..6]
gi\|82779145, gi\|... - gi\|82779145\|ref\|YP_405494.1\| putative transport protein [Shigella dysenteriae Sd197], gi\|81243293\|gb...	231.0	[0..1]	[463..1]
gi\|238784021, gi... - gi\|77956161\|ref\|ZP_00820293.1\| COG2233: Xanthine/uracil permeases [Yersinia bercovieri ATCC 43970], ...	231.0	[0..7]	[462..6]
gi\|145212807, gi... - gi\|145601111\|ref\|YP_001165187.1\| membrane permease [Yersinia pestis Pestoides F], gi\|145212807\|gb\|AB... gi\|166962786, gi... - gi\|167418792\|ref\|ZP_02310545.1\| xanthine permease [Yersinia pestis biovar Orientalis str. MG05-1020]... gi\|108777624, gi... - gi\|108813976\|ref\|YP_649743.1\| membrane permease [Yersinia pestis Nepal516], gi\|108777624\|gb\|ABG20143... gi\|108809499, gi... - gi\|108809499\|ref\|YP_653415.1\| putative membrane permease [Yersinia pestis Antiqua], gi\|108781412\|gb\|...	231.0	[0..7]	[462..17]
gi\|45434755, gi\|... - gi\|45439900\|ref\|NP_991439.1\| putative membrane permease [Yersinia pestis biovar Microtus str. 91001]...	231.0	[0..7]	[462..14]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSTLESEN AQPVAQTQNS ELIYRLEDRP PLPQTLFAAC QHLLAMFVAV ITPALLICQA  60
   61 LGLPAQDTQH IISMSLFASG VASIIQIKAW GPVGSGLLSI QGTSFNFVAP LIMGGTALKT 120
  121 GGADVPTMMA ALFGTLMLAS CTEMVISRVL HLARRIITPL VSGVVVMIIG LSLIQVGLTS 180
  181 IGGGYAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [188-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNTFGAPK NLLLAGVVLA LIILLNRQRN PYLRVASLVI AMAAGYALAW FMGMLPESNE  60
   61 PMTQELIMVP TPLYYGLGIE WSLLLPLMLV FMITSLETIG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [288-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DITATSDVSE QPVSGPLYMK RLKGGVLANG LNSFVSAVFN TFPNSCFGQN NGVIQLTGVA  60
   61 SRYVGFVVAL MLIVLGLFPA VSGFVQHIPE PVLGGATLVM FGTIAASGVR IVSREPLNRR 120
  121 AILIIALSLA VGLGVSQQPL ILQFAPEWLK NLLSSGIAAG GITAIVLNLI FPPEKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits