Protein: | gi|79324951, gi|... |
Organism: | Arabidopsis thaliana |
Length: | 344 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79324951, gi|....
Description | E-value | Query Range |
Subject Range |
|
376.0 | [0..2] | [278..2589] |
Region A: Residues: [1-171] |
1 11 21 31 41 51 | | | | | | 1 MDSQLNPSKR RKISVRHRCV ACYKMFNRRE HLVEHMKISY HSLHQPRCGV CLKHCKSFES 60 61 VREHLNVPDH LSKGNCKAIF TKRGCTLCLQ IFEEAFALAE HKNKCHLSPP RPLGTSTQRN 120 121 PSSSLAGSRL KAMALDCEMV GGGADGTIDQ CASVCLVDDD ENVIFSTHVQ P |
Detection Method: | |
Confidence: | 49.221849 |
Match: | 2i13A |
Description: | No description for 2i13A was found. |
Region A: Residues: [172-344] |
1 11 21 31 41 51 | | | | | | 1 LLPVTDYRHE ITGLTKEDLK DGMPLEHVRE RVFSFLCGGQ NDGAGRLLLV GHDLRHDMSC 60 61 LKLEYPSHLL RDTAKYVPLM KTNLVSQSLK YLTKSYLGYK IQCGKHEVYE DCVSAMRLYK 120 121 RMRDQEHVCS GKAEGNGLNS RKQSDLEKMN AEELYQKSTS EYRCWCLDRL SNP |
Detection Method: | |
Confidence: | 18.69897 |
Match: | 1j53A |
Description: | N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
ribonuclease activity | 5.30591758406946 | bayes_pls_golite062009 |
exoribonuclease activity | 3.71639182685131 | bayes_pls_golite062009 |
exoribonuclease activity, producing 5'-phosphomonoesters | 3.59362615133405 | bayes_pls_golite062009 |
3'-5'-exoribonuclease activity | 3.1992647486402 | bayes_pls_golite062009 |
exonuclease activity | 3.13676176369406 | bayes_pls_golite062009 |
nuclease activity | 3.11657409772275 | bayes_pls_golite062009 |
ribonuclease H activity | 2.91966688044755 | bayes_pls_golite062009 |
single-stranded DNA specific 3'-5' exodeoxyribonuclease activity | 2.75003136922541 | bayes_pls_golite062009 |
endonuclease activity | 2.63074055051349 | bayes_pls_golite062009 |
endoribonuclease activity | 2.59247838057313 | bayes_pls_golite062009 |
hydrolase activity, acting on ester bonds | 2.57498413015114 | bayes_pls_golite062009 |
hydrolase activity | 2.41899414621161 | bayes_pls_golite062009 |
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 2.04408785855894 | bayes_pls_golite062009 |
3'-5' exonuclease activity | 1.44123900197846 | bayes_pls_golite062009 |
catalytic activity | 1.25233849524628 | bayes_pls_golite062009 |
nucleic acid binding | 1.23371034593624 | bayes_pls_golite062009 |
protein binding | 1.16870279238939 | bayes_pls_golite062009 |
deoxyribonuclease activity | 1.1219517187744 | bayes_pls_golite062009 |
transcription regulator activity | 1.10433412699603 | bayes_pls_golite062009 |
DNA binding | 0.860359347662869 | bayes_pls_golite062009 |
binding | 0.762139256580538 | bayes_pls_golite062009 |
DNA polymerase activity | 0.717600245625866 | bayes_pls_golite062009 |
endoribonuclease activity, producing 5'-phosphomonoesters | 0.708753843279937 | bayes_pls_golite062009 |
endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | 0.598360955770972 | bayes_pls_golite062009 |
DNA-directed DNA polymerase activity | 0.568273228950698 | bayes_pls_golite062009 |
0.49473250705373 | bayes_pls_golite062009 | |
transcription factor activity | 0.332903382446869 | bayes_pls_golite062009 |
exodeoxyribonuclease activity | 0.278838342302102 | bayes_pls_golite062009 |
exodeoxyribonuclease activity, producing 5'-phosphomonoesters | 0.261428436029202 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.0701825322473915 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.00214157813118243 | bayes_pls_golite062009 |