YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110615152, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110615152, gi....

Description	E-value	Query Range	Subject Range
gi\|253324455, gi... - gi\|254288482\|ref\|YP_003054230.1\| electron transport complex protein RnfG [Escherichia coli BL21(DE3)... gi\|124499986, gi... - gi\|124529212\|ref\|ZP_01700287.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|242377362, gi... - gi\|251785089\|ref\|YP_002999393.1\| hypothetical protein B21_01591 [Escherichia coli BL21], gi\|24237736... gi\|83587966, gi\|... - gi\|83587966\|ref\|ZP_00926592.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|253973594, gi... - gi\|254161693\|ref\|YP_003044801.1\| electron transport complex protein RnfG [Escherichia coli B str. RE... gi\|170020017, gi... - gi\|170020017\|ref\|YP_001724971.1\| electron transport complex protein RnfG [Escherichia coli ATCC 8739...	244.0	[0..1]	[206..1]
gi\|157161093, gi... - gi\|75195711\|ref\|ZP_00705781.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch...	243.0	[0..1]	[206..1]
EG13937 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport... gi\|194431822, gi... - gi\|83571017\|ref\|ZP_00922459.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Shig... RNFG_ECOLI - Electron transport complex protein rnfG - Escherichia coli EG13937 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport... gi\|238900847, gi... - gi\|238900847\|ref\|YP_002926643.1\| putative oxidoreductase [Escherichia coli BW2952], gi\|238862742\|gb\|... gi\|170081295, gi... - gi\|170081295\|ref\|YP_001730615.1\| oxidoreductase [Escherichia coli str. K-12 substr. DH10B], gi\|16988... gi\|187428246, gi... - gi\|75178473\|ref\|ZP_00698519.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Shig... gi\|157156662, gi... - gi\|75190671\|ref\|ZP_00703938.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|75212968, gi\|... - gi\|75212968\|ref\|ZP_00712966.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|191165896, gi... - gi\|75230920\|ref\|ZP_00717369.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|1742689, gi\|8... - gi\|89108473\|ref\|AP_002253.1\| predicted oxidoreductase [Escherichia coli str. K-12 substr. W3110], gi... gi\|75257050, gi\|... - gi\|75257050\|ref\|ZP_00728610.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|75512936, gi\|... - gi\|75512936\|ref\|ZP_00735417.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|81245412, gi\|... - gi\|82544001\|ref\|YP_407948.1\| electron transport complex protein RnfG [Shigella boydii Sb227], gi\|812...	243.0	[0..1]	[206..1]
gi\|73855519, gi\|... - gi\|74312042\|ref\|YP_310461.1\| electron transport complex protein RnfG [Shigella sonnei Ss046], gi\|738...	243.0	[0..1]	[206..1]
gi\|25321386, gi\|... - pir\|\|H85769 hypothetical protein Z2640 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12515620, gi\|... - gi\|15802045\|ref\|NP_288067.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 EDL93... gi\|209400825, gi... - gi\|209400825\|ref\|YP_002270701.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia ... gi\|217328875, gi... - gi\|217328875\|ref\|ZP_03444956.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|195939020 - gi\|195939020\|ref\|ZP_03084402.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 st... gi\|208810445, gi... - gi\|208810445\|ref\|ZP_03252321.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|208731188, gi... - gi\|208816845\|ref\|ZP_03257965.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... RSXG_ECO57 - Electron transport complex subunit RsxG OS=Escherichia coli O157:H7 GN=rsxG PE=3 SV=1 gi\|208739364, gi... - gi\|208819241\|ref\|ZP_03259561.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|187768692, gi... - gi\|187768692\|gb\|EDU32536.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|188999229, gi... - gi\|188999229\|gb\|EDU68215.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189370955, gi... - gi\|189370955\|gb\|EDU89371.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189376893, gi... - gi\|189376893\|gb\|EDU95309.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168750555, gi... - gi\|188015260\|gb\|EDU53382.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189355560, gi... - gi\|189355560\|gb\|EDU73979.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168763665, gi... - gi\|189366184\|gb\|EDU84600.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168771173, gi... - gi\|189360035\|gb\|EDU78454.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|15831594, gi\|... - gi\|15831594\|ref\|NP_310367.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 str. ... gi\|254793248, gi... - gi\|254793248\|ref\|YP_003078085.1\| electron transport complex protein [Escherichia coli O157:H7 str. T...	242.0	[0..1]	[206..1]
gi\|197093977, gi... - gi\|197362500\|ref\|YP_002142137.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... RNFG_SALTI - Electron transport complex protein rnfG OS=Salmonella typhi GN=rnfG PE=3 SV=1 gi\|29137410, gi\|... - gi\|29141782\|ref\|NP_805124.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|16760458 - gi\|16760458\|ref\|NP_456075.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... RSXG_SALTI - Electron transport complex subunit RsxG OS=Salmonella typhi GN=rsxG PE=3 SV=1 gi\|56127833, gi\|... - gi\|56413576\|ref\|YP_150651.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|213616228 - gi\|213616228\|ref\|ZP_03372054.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213649170 - gi\|213649170\|ref\|ZP_03379223.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213855039 - gi\|213855039\|ref\|ZP_03383279.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|214000277 - gi\|214000277\|ref\|ZP_03411012.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213051631 - gi\|213051631\|ref\|ZP_03344509.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213420536 - gi\|213420536\|ref\|ZP_03353602.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213425983 - gi\|213425983\|ref\|ZP_03358733.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213583113 - gi\|213583113\|ref\|ZP_03364939.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ...	242.0	[0..1]	[206..1]
gi\|81241253, gi\|... - gi\|82777105\|ref\|YP_403454.1\| electron transport complex protein RnfG [Shigella dysenteriae Sd197], g...	242.0	[0..1]	[206..1]
gi\|26108281, gi\|... - gi\|26247878\|ref\|NP_753918.1\| electron transport complex protein RnfG [Escherichia coli CFT073], gi\|2... gi\|190906268, gi... - gi\|75238808\|ref\|ZP_00722792.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|117623817, gi... - gi\|117623817\|ref\|YP_852730.1\| electron transport complex protein RnfG [Escherichia coli APEC O1], gi... gi\|91210844, gi\|... - gi\|91210844\|ref\|YP_540830.1\| electron transport complex protein RnfG [Escherichia coli UTI89], gi\|91... gi\|110641754, gi... - gi\|110641754\|ref\|YP_669484.1\| electron transport complex protein RnfG [Escherichia coli 536], gi\|110... gi\|215264880, gi... - gi\|215486808\|ref\|YP_002329239.1\| electron transport complex protein RnfG [Escherichia coli O127:H6 s... gi\|218558502, gi... - gi\|218558502\|ref\|YP_002391415.1\| electron transport complex protein RnfG [Escherichia coli S88], gi\|... gi\|227837132, gi... - gi\|227885953\|ref\|ZP_04003758.1\| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972], gi\|2278371... gi\|237705574, gi... - gi\|237705574\|ref\|ZP_04536055.1\| electron transport complex protein RnfG [Escherichia sp. 3_2_53FAA],...	242.0	[0..1]	[206..1]
gi\|209918944, gi... - gi\|209918944\|ref\|YP_002293028.1\| electron transport complex protein RnfG [Escherichia coli SE11], gi... gi\|193070232, gi... - gi\|75234944\|ref\|ZP_00719223.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch...	241.0	[0..1]	[206..1]
gi\|238913144 - gi\|238913144\|ref\|ZP_04656981.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... RSXG_SALTY - Electron transport complex subunit RsxG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|207857041, gi... - gi\|207857041\|ref\|YP_002243692.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|224468563, gi... - gi\|224584036\|ref\|YP_002637834.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|197264186, gi... - gi\|197264186\|ref\|ZP_03164260.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197940631, gi... - gi\|198246115\|ref\|YP_002215680.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|199603199, gi... - gi\|200390754\|ref\|ZP_03217365.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|205272613, gi... - gi\|205352832\|ref\|YP_002226633.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205343738, gi... - gi\|205343738\|gb\|EDZ30502.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|194444890, gi... - gi\|194444890\|ref\|YP_002040704.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=ydgP] [protein=electron transport complex protein RnfG] [protein_id=YP_005237326.1] [location=... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|194472496, gi... - gi\|194472496\|ref\|ZP_03078480.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197212633, gi... - gi\|197248930\|ref\|YP_002146590.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205327827, gi... - gi\|205327827\|gb\|EDZ14591.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|205335379, gi... - gi\|205335379\|gb\|EDZ22143.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|62127676, gi\|... - gi\|62180043\|ref\|YP_216460.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|205346963, gi... - gi\|205346963\|gb\|EDZ33594.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|168463133, gi... - gi\|195634567\|gb\|EDX52919.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|167551574, gi... - gi\|205323588\|gb\|EDZ11427.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente...	241.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTIRKHGI TLALFAAGST GLTAAINQMT KTTIAEQASL QQKTLFDQVL PAERYNNALA  60
   61 QSCYLVTAPE LGKGEHRVYI AKQDDKPVAA VLEATAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGYSGAIQLL VGADFNGTVL GTRVTEHHET PGLGDKIELR LSDWLTHFAG KKISGADDAH  60
   61 WAVKKDGGDF DQFTGATITP RAVVNAVKRA GLYAQTLPAQ LSQLPACGE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.443697
Match:	PF04205.5
Description:	No description for PF04205.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.647	0.269	FMN binding	a.39.1	EF-hand
View	Download	0.493	0.159	electron transport	a.1.1	Globin-like
View	Download	0.494	0.048	electron transport	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.503	0.011	FMN binding	b.61.1	Avidin/streptavidin
View	Download	0.531	0.009	FMN binding	b.8.1	TRAF domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits