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View Structure Prediction Details

Protein: BEM4
Organism: Saccharomyces cerevisiae
Length: 633 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BEM4.

Description E-value Query
Range
Subject
Range
BEM4_YEAST - Bud emergence protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BEM4 PE=1 SV=1
BEM4 - Protein involved in establishment of cell polarity and bud emergence; interacts with the Rho1p small...
0.0 [1..633] [1..633]

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Predicted Domain #1
Region A:
Residues: [1-633]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYEEILFGL QPILNASSIK DVPMNDVYLG SYLAVMDQLA VSLREPSNRD IVGKTGLLLN  60
   61 LVRVLEQALD ICFHDTSISI NDKIAFYEIS SEVIRCIANA IIDNDDNREI LLDSGGKKLL 120
  121 NYYIGGVLQL DEISSDKSED SLVDKLQMRS VVLLRNFCIG NLKYTENLAP FIRGPLFVLL 180
  181 KTTQYSYLSS PEKVVLGSDL LNDILKVNYS NVQISDLFFL SQYIKKISSN VQNKELQAME 240
  241 DGAVEAYSNT ETQKFAGQGN QEYIEKEEED DEEDVNCELL LNLSTCLETI VAKDETINFT 300
  301 NEEQLVLSMQ KNLILSLVCL ESKTFNNKLI VMRRLISCAG NISANLTNSN KREQSLCIET 360
  361 IKSSASSYAL AAALMILCNS VASKSDAVAL LKLISLSELI QVGSLLQDPL QYQGFLDLLR 420
  421 KLLNLENTMW LDIKDLFTLF QIMRRCHEQT KYYNNLRSLL TNLLNKTLTV LPSSKIHNSI 480
  481 SSDPTIISFI AEHGTLTSCI AMDKLLVSKK ALPKEAITSL WDSIFKFQNL GQAEQLSISD 540
  541 LFHITKTVGI YLKDSSVTAD VNPIENILFK DYIQKLTLIL ETILSFKENK DKGSESCFNN 600
  601 GKFIAGIILN IVKNTKCLTP EEQNLEALAK SFF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [183-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQYSYLSSPE KVVLGSDLLN DILKVNYSNV QISDLFFLSQ YIKKISSNVQ NKELQAMEDG  60
   61 AVEAYSNTET QKFAGQGNQE YI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [265-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKEEEDDEED VNCELLLNLS TCLETIVAKD ETINFTNEEQ LVLSMQKNLI LSLVCLESKT  60
   61 FNNKLIVMRR LISCAGNISA NLTNSNKREQ SLCIETIKSS ASSYALAAAL MILCNSVASK 120
  121 SDAVALLKLI SLSELIQVGS LLQDPLQYQG FLDLLRKLLN LENTMWLDIK DLFTLFQIMR 180
  181 RCHEQTKYYN NLRSLLTNLL NKTLTVLPSS KIH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [478-633]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSISSDPTII SFIAEHGTLT SCIAMDKLLV SKKALPKEAI TSLWDSIFKF QNLGQAEQLS  60
   61 ISDLFHITKT VGIYLKDSSV TADVNPIENI LFKDYIQKLT LILETILSFK ENKDKGSESC 120
  121 FNNGKFIAGI ILNIVKNTKC LTPEEQNLEA LAKSFF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle