YRC Public Data Repository - Protein Structure Prediction

Protein:	PHNA_SHIFL
Organism:	Shigella flexneri
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHNA_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|189404624, gi... - gi\|189404624\|ref\|ZP_03007529.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189405662, gi... - gi\|189405662\|ref\|ZP_03007901.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189402136, gi... - gi\|189402136\|ref\|ZP_03006599.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|26250923, gi\|... - gi\|26250923\|ref\|NP_756963.1\| PhnA protein [Escherichia coli CFT073], gi\|26111355\|gb\|AAN83537.1\|AE016... gi\|189403929, gi... - gi\|189403929\|ref\|ZP_03007271.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|188017530, gi... - gi\|188024665\|ref\|ZP_02997194.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189001787, gi... - gi\|189010207\|ref\|ZP_03006240.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|187769913, gi... - gi\|187775966\|ref\|ZP_02992780.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|110617441, gi... - gi\|110807893\|ref\|YP_691413.1\| hypothetical protein SFV_4122 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91075229, gi\|... - gi\|91213655\|ref\|YP_543641.1\| hypothetical protein UTI89_C4702 [Escherichia coli UTI89], gi\|91075229\|... gi\|218697810, gi... - gi\|218697810\|ref\|YP_002405477.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|218372758, gi... - gi\|218702772\|ref\|YP_002410401.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|208735568, gi... - gi\|208814291\|ref\|ZP_03255620.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|254037118, gi... - gi\|254037118\|ref\|ZP_04871195.1\| alkylphosphonate utilization operon protein PhnA [Escherichia sp. 1_... gi\|218561197, gi... - gi\|218561197\|ref\|YP_002394110.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|226901608, gi... - gi\|237703696\|ref\|ZP_04534177.1\| PhnA protein [Escherichia sp. 3_2_53FAA], gi\|226901608\|gb\|EEH87867.1... gi\|191172025, gi... - gi\|191173405\|ref\|ZP_03034934.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli F... gi\|208809010, gi... - gi\|208809010\|ref\|ZP_03251347.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O...	216.0	[0..1]	[111..50]
gi\|205334312, gi... - gi\|205334312\|gb\|EDZ21076.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|197289967, gi... - gi\|197289967\|gb\|EDY29326.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|205337379, gi... - gi\|205337379\|gb\|EDZ24143.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|205347942, gi... - gi\|205347942\|gb\|EDZ34573.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|161617431, gi... - gi\|161617431\|ref\|YP_001591396.1\| hypothetical protein SPAB_05288 [Salmonella enterica subsp. enteric... gi\|167552262, gi... - gi\|205323052\|gb\|EDZ10891.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|205330144, gi... - gi\|205330144\|gb\|EDZ16908.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|62130371, gi\|... - gi\|62182738\|ref\|YP_219155.1\| hypothetical protein SC4168 [Salmonella enterica subsp. enterica serova... gi\|56130345, gi\|... - gi\|56416088\|ref\|YP_153163.1\| hypothetical protein SPA4107 [Salmonella enterica subsp. enterica serov... gi\|213052370 - gi\|213052370\|ref\|ZP_03345248.1\| hypothetical protein Salmoneentericaenterica_05221 [Salmonella enter... gi\|213427229 - gi\|213427229\|ref\|ZP_03359979.1\| hypothetical protein SentesTyphi_17462 [Salmonella enterica subsp. e... gi\|213608014 - gi\|213608014\|ref\|ZP_03368840.1\| hypothetical protein SentesTyp_00112 [Salmonella enterica subsp. ent... gi\|213647132 - gi\|213647132\|ref\|ZP_03377185.1\| hypothetical protein SentesTy_07370 [Salmonella enterica subsp. ente... gi\|197365014, gi... - gi\|197365014\|ref\|YP_002144651.1\| hypothetical protein SSPA3814 [Salmonella enterica subsp. enterica ... gi\|198243014, gi... - gi\|198243014\|ref\|YP_002218181.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteri... gi\|199605982, gi... - gi\|200388884\|ref\|ZP_03215496.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteric... gi\|204927392, gi... - gi\|204927392\|ref\|ZP_03218594.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteric... gi\|194455473, gi... - gi\|194469109\|ref\|ZP_03075093.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteric... gi\|194735822, gi... - gi\|194735822\|ref\|YP_002117224.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteri... gi\|197249113, gi... - gi\|197249113\|ref\|YP_002149204.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteri... gi\|197242890, gi... - gi\|197264635\|ref\|ZP_03164709.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteric... gi\|168466990, gi... - gi\|195630611\|gb\|EDX49223.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|168821252, gi... - gi\|205342051\|gb\|EDZ28815.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enterica su... gi\|194444767, gi... - gi\|194444767\|ref\|YP_002043539.1\| alkylphosphonate utilization operon protein PhnA [Salmonella enteri... gi\|194448085, gi... - gi\|194448085\|ref\|YP_002048280.1\| hypothetical protein SeHA_C4635 [Salmonella enterica subsp. enteric... gi\|238912745 - gi\|238912745\|ref\|ZP_04656582.1\| hypothetical protein SentesTe_16672 [Salmonella enterica subsp. ente... gi\|213852582 - gi\|213852582\|ref\|ZP_03382114.1\| hypothetical protein SentesT_06722 [Salmonella enterica subsp. enter... gi\|213973800 - gi\|213973800\|ref\|ZP_03401059.1\| hypothetical protein Salmonellaentericaenterica_03736 [Salmonella en... gi\|224586054, gi... - gi\|224586054\|ref\|YP_002639853.1\| hypothetical protein SPC_4352 [Salmonella enterica subsp. enterica ... gi\|16767539, gi\|... - gi\|16767539\|ref\|NP_463154.1\| hypothetical protein STM4289 [Salmonella typhimurium LT2], gi\|16422850\|... gi\|29140096, gi\|... - gi\|29144458\|ref\|NP_807800.1\| hypothetical protein t4196 [Salmonella enterica subsp. enterica serovar... gi\|25346456, gi\|... - gi\|25346456\|pir\|\|AI1021 conserved hypothetical protein STY4488 [imported] - Salmonella enterica subs... gi\|16762971 - gi\|16762971\|ref\|NP_458588.1\| hypothetical protein STY4488 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=phnA] [protein=hypothetical protein] [protein_id=YP_005240594.1] [location=complement(4543709....	202.0	[0..1]	[111..1]
gi\|81247854, gi\|... - gi\|82546443\|ref\|YP_410390.1\| hypothetical protein SBO_4133 [Shigella boydii Sb227], gi\|81247854\|gb\|A...	202.0	[0..1]	[111..1]
gi\|32455844, gi\|... - gi\|32455844\|ref\|NP_862496.1\| hypothetical protein pADP-1_p059 [Pseudomonas sp. ADP], gi\|13937480\|gb\|...	199.0	[0..2]	[110..42]
gi\|112489956 - gi\|112489956\|pdb\|2AKL\|A Chain A, Solution Structure For Phn-A Like Protein Pa0128 From Pseudomonas A...	197.0	[0..2]	[110..26]
gi\|88799865, gi\|... - gi\|88799865\|ref\|ZP_01115438.1\| alkylphosphonate utilization operon protein PhnA, putative [Reinekea ...	195.0	[0..1]	[110..1]
gi\|95132832, gi\|... - gi\|95931087\|ref\|ZP_01313813.1\| alkylphosphonate utilization operon protein PhnA [Desulfuromonas acet...	194.0	[0..1]	[111..1]
gi\|39985474, gi\|... - gi\|39998527\|ref\|NP_954478.1\| hypothetical protein GSU3438 [Geobacter sulfurreducens PCA], gi\|3998547...	194.0	[0..2]	[110..3]
gi\|93357622, gi\|... - gi\|94313770\|ref\|YP_586979.1\| alkylphosphonate utilization operon protein PhnA [Ralstonia metallidura...	194.0	[0..2]	[110..20]
gi\|238714444, gi... - gi\|77957984\|ref\|ZP_00822026.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho...	193.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPHCPKCN SEYTYEDNGM YICPECAYEW NDAEPAQESD ELIVKDANGN LLADGDSVTI  60
   61 IKDLKVKGSS SMLKIGTKVK NIRLVEGDHN IDCKIDGFGP MKLKSEFVKK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	2aklA
Description:	No description for 2aklA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.584446042315417	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: