YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29140096, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29140096, gi|....

Description	E-value	Query Range	Subject Range
gi\|189404624, gi... - gi\|189404624\|ref\|ZP_03007529.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189405662, gi... - gi\|189405662\|ref\|ZP_03007901.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189402136, gi... - gi\|189402136\|ref\|ZP_03006599.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|26250923, gi\|... - gi\|26250923\|ref\|NP_756963.1\| PhnA protein [Escherichia coli CFT073], gi\|26111355\|gb\|AAN83537.1\|AE016... gi\|189403929, gi... - gi\|189403929\|ref\|ZP_03007271.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|188017530, gi... - gi\|188024665\|ref\|ZP_02997194.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189001787, gi... - gi\|189010207\|ref\|ZP_03006240.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|187769913, gi... - gi\|187775966\|ref\|ZP_02992780.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|110617441, gi... - gi\|110807893\|ref\|YP_691413.1\| hypothetical protein SFV_4122 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91075229, gi\|... - gi\|91213655\|ref\|YP_543641.1\| hypothetical protein UTI89_C4702 [Escherichia coli UTI89], gi\|91075229\|... gi\|218697810, gi... - gi\|218697810\|ref\|YP_002405477.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|218372758, gi... - gi\|218702772\|ref\|YP_002410401.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|208735568, gi... - gi\|208814291\|ref\|ZP_03255620.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|254037118, gi... - gi\|254037118\|ref\|ZP_04871195.1\| alkylphosphonate utilization operon protein PhnA [Escherichia sp. 1_... gi\|218561197, gi... - gi\|218561197\|ref\|YP_002394110.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|226901608, gi... - gi\|237703696\|ref\|ZP_04534177.1\| PhnA protein [Escherichia sp. 3_2_53FAA], gi\|226901608\|gb\|EEH87867.1... gi\|191172025, gi... - gi\|191173405\|ref\|ZP_03034934.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli F... gi\|208809010, gi... - gi\|208809010\|ref\|ZP_03251347.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O...	226.0	[0..1]	[111..50]
gi\|253975943, gi... - gi\|254164042\|ref\|YP_003047150.1\| hypothetical protein ECB_03979 [Escherichia coli B str. REL606], gi... gi\|75241157, gi\|... - gi\|75241157\|ref\|ZP_00725031.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|124527747, gi... - gi\|124527747\|ref\|ZP_01699182.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli B... gi\|254796130, gi... - gi\|254796130\|ref\|YP_003080967.1\| hypothetical protein ECSP_5207 [Escherichia coli O157:H7 str. TW143... PHNA_ECOL6 - Protein phnA OS=Escherichia coli O6 GN=phnA PE=4 SV=1 gi\|81243311, gi\|... - gi\|82779163\|ref\|YP_405512.1\| hypothetical protein SDY_4109 [Shigella dysenteriae Sd197], gi\|81243311... gi\|89110829, gi\|... - gi\|89110829\|ref\|AP_004609.1\| predicted phosphonate metabolizing protein [Escherichia coli str. K-12 ... gi\|188496332, gi... - gi\|75514867\|ref\|ZP_00737096.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|74314593, gi\|... - gi\|74314593\|ref\|YP_313012.1\| hypothetical protein SSON_4283 [Shigella sonnei Ss046], gi\|73858070\|gb\|... gi\|218556660, gi... - gi\|218556660\|ref\|YP_002389574.1\| hypothetical protein ECIAI1_4337 [Escherichia coli IAI1], gi\|218363... gi\|218434820, gi... - gi\|218707723\|ref\|YP_002415242.1\| hypothetical protein ECUMN_4639 [Escherichia coli UMN026], gi\|21843... EG10711 - zinc-ribbon family protein / Zinc-ribbon family protein, function unknown gi\|157069253, gi... - gi\|157163573\|ref\|YP_001460891.1\| hypothetical protein EcHS_A4348 [Escherichia coli HS], gi\|157069253... gi\|157156127, gi... - gi\|157156127\|ref\|YP_001465607.1\| hypothetical protein EcE24377A_4662 [Escherichia coli E24377A], gi\|... gi\|13364567, gi\|... - gi\|15834344\|ref\|NP_313117.1\| hypothetical protein ECs5090 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110644465, gi... - gi\|110644465\|ref\|YP_672195.1\| hypothetical protein ECP_4350 [Escherichia coli 536], gi\|110346057\|gb\|... PHNA_ECOL6 - Protein PhnA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=phnA PE=4 SV=1 gi\|170021893, gi... - gi\|170021893\|ref\|YP_001726847.1\| hypothetical protein EcolC_3919 [Escherichia coli ATCC 8739], gi\|16... gi\|170083560, gi... - gi\|170083560\|ref\|YP_001732880.1\| hypothetical protein ECDH10B_4300 [Escherichia coli str. K-12 subst... PHNA_SHIFL - Protein PhnA OS=Shigella flexneri GN=phnA PE=4 SV=1 gi\|187428204, gi... - gi\|187731212\|ref\|YP_001882779.1\| alkylphosphonate utilization operon protein PhnA [Shigella boydii C... gi\|24054624, gi\|... - gi\|24115323\|ref\|NP_709833.1\| hypothetical protein SF4115 [Shigella flexneri 2a str. 301], gi\|2405462... gi\|194437229, gi... - gi\|194437229\|ref\|ZP_03069327.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli 1... gi\|30064677, gi\|... - gi\|30064677\|ref\|NP_838848.1\| hypothetical protein S3615 [Shigella flexneri 2a str. 2457T], gi\|300429... gi\|195935896 - gi\|195935896\|ref\|ZP_03081278.1\| hypothetical protein EscherichcoliO157_05435 [Escherichia coli O157:... PHNA_ECOLI - Protein phnA - Escherichia coli PHNA_ECO57 - Protein PhnA OS=Escherichia coli O157:H7 GN=phnA PE=4 SV=1 gi\|209921597, gi... - gi\|209921597\|ref\|YP_002295681.1\| hypothetical protein ECSE_4406 [Escherichia coli SE11], gi\|20991485... EG10711 - zinc-ribbon family protein / Zinc-ribbon family protein, function unknown gi\|215489458, gi... - gi\|215489458\|ref\|YP_002331889.1\| hypothetical protein E2348C_4436 [Escherichia coli O127:H6 str. E23... gi\|15804700, gi\|... - gi\|15804700\|ref\|NP_290741.1\| hypothetical protein Z5710 [Escherichia coli O157:H7 EDL933], gi\|125190... gi\|238903216, gi... - gi\|238903216\|ref\|YP_002929012.1\| hypothetical protein BWG_3821 [Escherichia coli BW2952], gi\|2388604... gi\|251787362, gi... - gi\|251787362\|ref\|YP_003001666.1\| hypothetical protein B21_03940 [Escherichia coli BL21], gi\|24237963... gi\|253980099, gi... - gi\|254290792\|ref\|YP_003056540.1\| hypothetical protein ECD_03979 [Escherichia coli BL21(DE3)], gi\|253...	213.0	[0..1]	[111..1]
gi\|81247854, gi\|... - gi\|82546443\|ref\|YP_410390.1\| hypothetical protein SBO_4133 [Shigella boydii Sb227], gi\|81247854\|gb\|A...	211.0	[0..1]	[111..1]
gi\|32455844, gi\|... - gi\|32455844\|ref\|NP_862496.1\| hypothetical protein pADP-1_p059 [Pseudomonas sp. ADP], gi\|13937480\|gb\|...	211.0	[0..2]	[110..42]
gi\|112489956 - gi\|112489956\|pdb\|2AKL\|A Chain A, Solution Structure For Phn-A Like Protein Pa0128 From Pseudomonas A...	207.0	[0..2]	[110..26]
gi\|93357622, gi\|... - gi\|94313770\|ref\|YP_586979.1\| alkylphosphonate utilization operon protein PhnA [Ralstonia metallidura...	206.0	[0..2]	[110..20]
gi\|39985474, gi\|... - gi\|39998527\|ref\|NP_954478.1\| hypothetical protein GSU3438 [Geobacter sulfurreducens PCA], gi\|3998547...	202.0	[0..2]	[110..3]
gi\|9945956, gi\|1... - gi\|9945956\|gb\|AAG03518.1\|AE004450_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g... gi\|218888873, gi... - gi\|218888873\|ref\|YP_002437737.1\| putative alkylphosphonate uptake protein [Pseudomonas aeruginosa LE... gi\|11347621 - pir\|\|A83631 conserved hypothetical protein PA0128 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116053849, gi... - gi\|32043280\|ref\|ZP_00140542.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|150964010, gi... - gi\|94416074\|ref\|ZP_01295905.1\| hypothetical protein PaerP_01002154 [Pseudomonas aeruginosa PA7], gi\|... gi\|107099120 - gi\|107099120\|ref\|ZP_01363038.1\| hypothetical protein PaerPA_01000129 [Pseudomonas aeruginosa PACS2] gi\|254237630, gi... - gi\|84318320\|ref\|ZP_00966745.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|194554220, gi... - gi\|84324736\|ref\|ZP_00972792.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho...	202.0	[0..2]	[110..3]
gi\|225859357, gi... - gi\|225859357\|ref\|YP_002740867.1\| alkylphosphonate utilization operon protein PhnA [Streptococcus pne... gi\|147762945, gi... - gi\|149013280\|ref\|ZP_01834038.1\| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP19-BS75], ... gi\|111657094, gi... - gi\|66877173\|ref\|ZP_00402807.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|148986258, gi... - gi\|148986258\|ref\|ZP_01819179.1\| phnA protein [Streptococcus pneumoniae SP3-BS71], gi\|147921803\|gb\|ED... gi\|25346452 - pir\|\|E95186 phnA protein [imported] - Streptococcus pneumoniae (strain TIGR4) gi\|147925855, gi... - gi\|148988654\|ref\|ZP_01820087.1\| tRNA pseudouridine synthase A [Streptococcus pneumoniae SP6-BS73], g... gi\|183574212, gi... - gi\|183574212\|gb\|EDT94740.1\| alkylphosphonate utilization operon protein PhnA [Streptococcus pneumoni... gi\|194357701, gi... - gi\|194398034\|ref\|YP_002038231.1\| alkylphosphonate utilization operon protein PhnA [Streptococcus pne...	202.0	[0..2]	[110..3]
gi\|168209834, gi... - gi\|170712055\|gb\|EDT24237.1\| phnA family protein [Clostridium perfringens B str. ATCC 3626], gi\|16820... gi\|110800666, gi... - gi\|110800666\|ref\|YP_697281.1\| phnA family protein [Clostridium perfringens ATCC 13124], gi\|110675313... gi\|168207925, gi... - gi\|170660775\|gb\|EDT13458.1\| phnA family protein [Clostridium perfringens E str. JGS1987], gi\|1682079... gi\|182626496, gi... - gi\|182626496\|ref\|ZP_02954246.1\| phnA family protein [Clostridium perfringens D str. JGS1721], gi\|177... gi\|169342270, gi... - gi\|169342270\|ref\|ZP_02863350.1\| phnA family protein [Clostridium perfringens C str. JGS1495], gi\|169... gi\|168217358, gi... - gi\|182380607\|gb\|EDT78086.1\| phnA family protein [Clostridium perfringens NCTC 8239], gi\|168217358\|re... gi\|18311574, gi\|... - gi\|18311574\|ref\|NP_563508.1\| phnA family protein [Clostridium perfringens str. 13], gi\|18146258\|dbj\|...	201.0	[0..3]	[110..4]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPHCPQCN SEYTYEDNGM FICPECAHEW NDAEPAQESD ELIVKDANGN LLADGDSVTI  60
   61 VKDLKVKGSS SMLKIGTKVK NIRLVEGDHN IDCKIDGFGP MKLKSEFVKK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.221849
Match:	2aklA
Description:	No description for 2aklA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits