YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25305322
Organism:	Lactococcus lactis subsp. lactis
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25305322.

Description	E-value	Query Range	Subject Range
gi\|116106900, gi... - gi\|62463050\|ref\|ZP_00382405.1\| COG0073: EMAP domain [Lactococcus lactis subsp. cremoris SK11], gi\|11...	213.0	[0..1]	[208..1]
gi\|134271225, gi... - gi\|139472979\|ref\|YP_001127694.1\| putative tRNA-binding protein [Streptococcus pyogenes str. Manfredo... gi\|94543120, gi\|... - gi\|94989612\|ref\|YP_597712.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS1027... gi\|50913496, gi\|... - gi\|50913496\|ref\|YP_059468.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS1039...	195.0	[0..1]	[207..1]
gi\|71902765, gi\|... - gi\|71902765\|ref\|YP_279568.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS6180...	195.0	[0..1]	[207..1]
gi\|56807744 - gi\|56807744\|ref\|ZP_00365607.1\| COG0073: EMAP domain [Streptococcus pyogenes M49 591]	195.0	[0..1]	[207..1]
gi\|19747393, gi\|... - gi\|19747393\|gb\|AAL96930.1\| hypothetical protein spyM18_0119 [Streptococcus pyogenes MGAS8232], gi\|19... gi\|28895006, gi\|... - gi\|28895006\|ref\|NP_801356.1\| hypothetical protein SPs0094 [Streptococcus pyogenes SSI-1], gi\|2881025... gi\|21903810, gi\|... - gi\|21909628\|ref\|NP_663896.1\| hypothetical protein SpyM3_0092 [Streptococcus pyogenes MGAS315], gi\|21...	194.0	[0..1]	[207..1]
gi\|50590399, gi\|... - gi\|81176905\|ref\|ZP_00875867.1\| t-RNA-binding region [Streptococcus suis 89/1591], gi\|80976347\|gb\|EAP...	194.0	[0..1]	[207..1]
gi\|15901735, gi\|... - gi\|66877193\|ref\|ZP_00402824.1\| COG0073: EMAP domain [Streptococcus pneumoniae TIGR4], gi\|15901735\|re... gi\|25305324 - pir\|\|B95223 conserved hypothetical protein SP1910 [imported] - Streptococcus pneumoniae (strain TIGR...	194.0	[0..1]	[208..1]
gi\|71909915, gi\|... - gi\|71909915\|ref\|YP_281465.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS5005...	193.0	[0..1]	[207..1]
gi\|24378329, gi\|... - gi\|24380314\|ref\|NP_722269.1\| putative phenylalanyl-tRNA synthetase, beta subunit [Streptococcus muta...	193.0	[0..1]	[207..1]
gi\|55821820, gi\|... - gi\|55821820\|ref\|YP_140262.1\| phenylalanyl-tRNA synthetase-like protein [Streptococcus thermophilus L... gi\|55737805 - gb\|AAV61447.1\| phenylalanyl-tRNA synthetase homolog [Streptococcus thermophilus LMG 18311] gi\|116101805, gi... - gi\|62527738\|ref\|ZP_00389007.1\| COG0073: EMAP domain [Streptococcus thermophilus LMD-9], gi\|116628528...	193.0	[0..1]	[207..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIATYNTNVG DVLMLITAND KGEKVNFERK GKVARVFIEE TGATVAWNIF EAKSLLANLS  60
   61 GNGQVVLSSD DIETLNKELG KSGFSDVLVH DAQPKFVVAE IVEMEDHPDS DHLHICKVNV 120
  121 GFADPVQIVC GAPNAALGLK TVAALPGAMM PNGSLIFPGA LRGVQSYGML CSARELELPN 180
  181 APEVRGIIEL SSDLSAGKAF DSETMWQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1rqgA
Description:	Methionyl-tRNA synthetase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits