YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34495898, gi\|...
Organism:	Chromobacterium violaceum ATCC 12472
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34495898, gi|....

Description	E-value	Query Range	Subject Range
gi\|32455844, gi\|... - gi\|32455844\|ref\|NP_862496.1\| hypothetical protein pADP-1_p059 [Pseudomonas sp. ADP], gi\|13937480\|gb\|...	206.0	[0..1]	[110..40]
gi\|189404624, gi... - gi\|189404624\|ref\|ZP_03007529.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189405662, gi... - gi\|189405662\|ref\|ZP_03007901.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189402136, gi... - gi\|189402136\|ref\|ZP_03006599.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|26250923, gi\|... - gi\|26250923\|ref\|NP_756963.1\| PhnA protein [Escherichia coli CFT073], gi\|26111355\|gb\|AAN83537.1\|AE016... gi\|189403929, gi... - gi\|189403929\|ref\|ZP_03007271.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|188017530, gi... - gi\|188024665\|ref\|ZP_02997194.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189001787, gi... - gi\|189010207\|ref\|ZP_03006240.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|187769913, gi... - gi\|187775966\|ref\|ZP_02992780.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|110617441, gi... - gi\|110807893\|ref\|YP_691413.1\| hypothetical protein SFV_4122 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91075229, gi\|... - gi\|91213655\|ref\|YP_543641.1\| hypothetical protein UTI89_C4702 [Escherichia coli UTI89], gi\|91075229\|... gi\|218697810, gi... - gi\|218697810\|ref\|YP_002405477.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|218372758, gi... - gi\|218702772\|ref\|YP_002410401.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|208735568, gi... - gi\|208814291\|ref\|ZP_03255620.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|254037118, gi... - gi\|254037118\|ref\|ZP_04871195.1\| alkylphosphonate utilization operon protein PhnA [Escherichia sp. 1_... gi\|218561197, gi... - gi\|218561197\|ref\|YP_002394110.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|226901608, gi... - gi\|237703696\|ref\|ZP_04534177.1\| PhnA protein [Escherichia sp. 3_2_53FAA], gi\|226901608\|gb\|EEH87867.1... gi\|191172025, gi... - gi\|191173405\|ref\|ZP_03034934.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli F... gi\|208809010, gi... - gi\|208809010\|ref\|ZP_03251347.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O...	204.0	[0..4]	[110..52]
gi\|112489956 - gi\|112489956\|pdb\|2AKL\|A Chain A, Solution Structure For Phn-A Like Protein Pa0128 From Pseudomonas A...	204.0	[0..2]	[110..25]
gi\|93357622, gi\|... - gi\|94313770\|ref\|YP_586979.1\| alkylphosphonate utilization operon protein PhnA [Ralstonia metallidura...	203.0	[0..1]	[110..18]
gi\|9945956, gi\|1... - gi\|9945956\|gb\|AAG03518.1\|AE004450_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g... gi\|218888873, gi... - gi\|218888873\|ref\|YP_002437737.1\| putative alkylphosphonate uptake protein [Pseudomonas aeruginosa LE... gi\|11347621 - pir\|\|A83631 conserved hypothetical protein PA0128 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116053849, gi... - gi\|32043280\|ref\|ZP_00140542.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|150964010, gi... - gi\|94416074\|ref\|ZP_01295905.1\| hypothetical protein PaerP_01002154 [Pseudomonas aeruginosa PA7], gi\|... gi\|107099120 - gi\|107099120\|ref\|ZP_01363038.1\| hypothetical protein PaerPA_01000129 [Pseudomonas aeruginosa PACS2] gi\|254237630, gi... - gi\|84318320\|ref\|ZP_00966745.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|194554220, gi... - gi\|84324736\|ref\|ZP_00972792.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho...	202.0	[0..1]	[110..1]
gi\|39985474, gi\|... - gi\|39998527\|ref\|NP_954478.1\| hypothetical protein GSU3438 [Geobacter sulfurreducens PCA], gi\|3998547...	200.0	[0..1]	[111..1]
gi\|78187337, gi\|... - gi\|78187337\|ref\|YP_375380.1\| PhnA protein [Pelodictyon luteolum DSM 273], gi\|78167239\|gb\|ABB24337.1\|...	199.0	[0..1]	[111..1]
gi\|29343403, gi\|... - gi\|29375941\|ref\|NP_815095.1\| phnA protein [Enterococcus faecalis V583], gi\|29343403\|gb\|AAO81165.1\| p... gi\|238858142, gi... - gi\|238858142\|ref\|ZP_04648365.1\| putative alkylphosphonate utilization operon protein PhnA [Enterococ...	199.0	[0..2]	[110..3]
gi\|21673831, gi\|... - gi\|21673831\|ref\|NP_661896.1\| PhnA protein [Chlorobium tepidum TLS], gi\|21646964\|gb\|AAM72238.1\| phnA ...	199.0	[0..1]	[110..1]
gi\|168209834, gi... - gi\|170712055\|gb\|EDT24237.1\| phnA family protein [Clostridium perfringens B str. ATCC 3626], gi\|16820... gi\|110800666, gi... - gi\|110800666\|ref\|YP_697281.1\| phnA family protein [Clostridium perfringens ATCC 13124], gi\|110675313... gi\|168207925, gi... - gi\|170660775\|gb\|EDT13458.1\| phnA family protein [Clostridium perfringens E str. JGS1987], gi\|1682079... gi\|182626496, gi... - gi\|182626496\|ref\|ZP_02954246.1\| phnA family protein [Clostridium perfringens D str. JGS1721], gi\|177... gi\|169342270, gi... - gi\|169342270\|ref\|ZP_02863350.1\| phnA family protein [Clostridium perfringens C str. JGS1495], gi\|169... gi\|168217358, gi... - gi\|182380607\|gb\|EDT78086.1\| phnA family protein [Clostridium perfringens NCTC 8239], gi\|168217358\|re... gi\|18311574, gi\|... - gi\|18311574\|ref\|NP_563508.1\| phnA family protein [Clostridium perfringens str. 13], gi\|18146258\|dbj\|...	199.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQMPACPQC GSEYTYQDGA LYVCPECAHE WSDQPAAAEE VRVVRDAVGN VLQDGDSVTV  60
   61 IKDLKVKGSS LVVKVGTKVK NIRLVDGDHD IDCKIDGIGA MGLKSEFVKK A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.39794
Match:	2aklA
Description:	No description for 2aklA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits