YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11347621
Organism:	Pseudomonas aeruginosa
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11347621.

Description	E-value	Query Range	Subject Range
gi\|112489956 - gi\|112489956\|pdb\|2AKL\|A Chain A, Solution Structure For Phn-A Like Protein Pa0128 From Pseudomonas A...	211.0	[0..2]	[113..25]
gi\|32455844, gi\|... - gi\|32455844\|ref\|NP_862496.1\| hypothetical protein pADP-1_p059 [Pseudomonas sp. ADP], gi\|13937480\|gb\|...	210.0	[0..1]	[113..40]
gi\|93357622, gi\|... - gi\|94313770\|ref\|YP_586979.1\| alkylphosphonate utilization operon protein PhnA [Ralstonia metallidura...	209.0	[0..1]	[113..18]
gi\|189404624, gi... - gi\|189404624\|ref\|ZP_03007529.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189405662, gi... - gi\|189405662\|ref\|ZP_03007901.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189402136, gi... - gi\|189402136\|ref\|ZP_03006599.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|26250923, gi\|... - gi\|26250923\|ref\|NP_756963.1\| PhnA protein [Escherichia coli CFT073], gi\|26111355\|gb\|AAN83537.1\|AE016... gi\|189403929, gi... - gi\|189403929\|ref\|ZP_03007271.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|188017530, gi... - gi\|188024665\|ref\|ZP_02997194.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189001787, gi... - gi\|189010207\|ref\|ZP_03006240.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|187769913, gi... - gi\|187775966\|ref\|ZP_02992780.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|110617441, gi... - gi\|110807893\|ref\|YP_691413.1\| hypothetical protein SFV_4122 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91075229, gi\|... - gi\|91213655\|ref\|YP_543641.1\| hypothetical protein UTI89_C4702 [Escherichia coli UTI89], gi\|91075229\|... gi\|218697810, gi... - gi\|218697810\|ref\|YP_002405477.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|218372758, gi... - gi\|218702772\|ref\|YP_002410401.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|208735568, gi... - gi\|208814291\|ref\|ZP_03255620.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|254037118, gi... - gi\|254037118\|ref\|ZP_04871195.1\| alkylphosphonate utilization operon protein PhnA [Escherichia sp. 1_... gi\|218561197, gi... - gi\|218561197\|ref\|YP_002394110.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|226901608, gi... - gi\|237703696\|ref\|ZP_04534177.1\| PhnA protein [Escherichia sp. 3_2_53FAA], gi\|226901608\|gb\|EEH87867.1... gi\|191172025, gi... - gi\|191173405\|ref\|ZP_03034934.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli F... gi\|208809010, gi... - gi\|208809010\|ref\|ZP_03251347.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O...	204.0	[0..3]	[112..51]
gi\|39985474, gi\|... - gi\|39998527\|ref\|NP_954478.1\| hypothetical protein GSU3438 [Geobacter sulfurreducens PCA], gi\|3998547...	203.0	[0..1]	[112..1]
gi\|78222021, gi\|... - gi\|78222021\|ref\|YP_383768.1\| PhnA protein [Geobacter metallireducens GS-15], gi\|78193276\|gb\|ABB31043...	201.0	[0..1]	[112..1]
gi\|95109041 - gi\|95109041\|emb\|CAK13737.1\| alkylphosphonate utilization operon protein PhnA [Pseudomonas entomophil... gi\|95109041, gi\|... - gi\|95109041\|emb\|CAK13737.1\| alkylphosphonate utilization operon protein PhnA [Pseudomonas entomophil...	200.0	[0..1]	[113..1]
gi\|83749922, gi\|... - gi\|83749922\|ref\|ZP_00946881.1\| PhnA protein [Ralstonia solanacearum UW551], gi\|83723410\|gb\|EAP70629.... gi\|206592241, gi... - gi\|207738871\|ref\|YP_002257264.1\| phna protein alkylphosphonate uptake [Ralstonia solanacearum IPO160... gi\|207724984, gi... - gi\|207724984\|ref\|YP_002255381.1\| phna protein alkylphosphonate uptake [Ralstonia solanacearum MolK2]...	200.0	[0..1]	[113..1]
gi\|17431854 - gi\|17431854\|emb\|CAD18532.1\| probable phna protein alkylphosphonate uptake [Ralstonia solanacearum GM... gi\|17549600 - gi\|17549600\|ref\|NP_522940.1\| PHNA protein alkylphosphonate uptake [Ralstonia solanacearum GMI1000]	199.0	[0..1]	[113..1]
gi\|228923681, gi... - gi\|228923681\|ref\|ZP_04086959.1\| hypothetical protein bthur0011_46560 [Bacillus thuringiensis serovar... gi\|228842053, gi... - gi\|228917573\|ref\|ZP_04081117.1\| hypothetical protein bthur0012_47790 [Bacillus thuringiensis serovar... gi\|228936243, gi... - gi\|228936243\|ref\|ZP_04099042.1\| hypothetical protein bthur0009_46810 [Bacillus thuringiensis serovar... gi\|228829651, gi... - gi\|228929971\|ref\|ZP_04092982.1\| hypothetical protein bthur0010_46530 [Bacillus thuringiensis serovar... gi\|228961194, gi... - gi\|228961194\|ref\|ZP_04122815.1\| hypothetical protein bthur0005_46420 [Bacillus thuringiensis serovar... gi\|228804339, gi... - gi\|228955206\|ref\|ZP_04117214.1\| hypothetical protein bthur0006_45640 [Bacillus thuringiensis serovar... gi\|51974053, gi\|... - gi\|52140584\|ref\|YP_086246.1\| alkylphosphonate utilization operon protein [Bacillus cereus E33L], gi\|... gi\|229048636, gi... - gi\|229048636\|ref\|ZP_04194194.1\| hypothetical protein bcere0027_45950 [Bacillus cereus AH676], gi\|228... gi\|228988188, gi... - gi\|228988188\|ref\|ZP_04148285.1\| hypothetical protein bthur0001_48460 [Bacillus thuringiensis serovar... gi\|49181729, gi\|... - gi\|49187802\|ref\|YP_031055.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis st... gi\|228701106, gi... - gi\|229082188\|ref\|ZP_04214652.1\| hypothetical protein bcere0023_48060 [Bacillus cereus Rock4-2], gi\|2... gi\|49481015, gi\|... - gi\|49481015\|ref\|YP_038964.1\| alkylphosphonate utilization operon protein [Bacillus thuringiensis ser... gi\|228710407, gi... - gi\|229072431\|ref\|ZP_04205633.1\| hypothetical protein bcere0025_45920 [Bacillus cereus F65185], gi\|22... gi\|228671037, gi... - gi\|229112389\|ref\|ZP_04241927.1\| hypothetical protein bcere0018_46290 [Bacillus cereus Rock1-15], gi\|... gi\|229094045, gi... - gi\|229094045\|ref\|ZP_04225130.1\| hypothetical protein bcere0021_47610 [Bacillus cereus Rock3-42], gi\|... gi\|228653136, gi... - gi\|229130203\|ref\|ZP_04259162.1\| hypothetical protein bcere0015_46390 [Bacillus cereus BDRD-Cer4], gi... gi\|229124483, gi... - gi\|229124483\|ref\|ZP_04253668.1\| hypothetical protein bcere0016_47670 [Bacillus cereus 95/8201], gi\|2... gi\|229147487, gi... - gi\|229147487\|ref\|ZP_04275834.1\| hypothetical protein bcere0012_46160 [Bacillus cereus BDRD-ST24], gi... gi\|228641729, gi... - gi\|229141661\|ref\|ZP_04270191.1\| hypothetical protein bcere0013_47510 [Bacillus cereus BDRD-ST26], gi... gi\|65316934 - gi\|65316934\|ref\|ZP_00389893.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|229158543, gi... - gi\|229158543\|ref\|ZP_04286602.1\| hypothetical protein bcere0010_47160 [Bacillus cereus ATCC 4342], gi... gi\|228630230, gi... - gi\|229153131\|ref\|ZP_04281310.1\| hypothetical protein bcere0011_46610 [Bacillus cereus m1550], gi\|228... gi\|228607787, gi... - gi\|229175646\|ref\|ZP_04303154.1\| hypothetical protein bcere0006_47230 [Bacillus cereus MM3], gi\|22860... gi\|228619543, gi... - gi\|229163922\|ref\|ZP_04291862.1\| hypothetical protein bcere0009_46850 [Bacillus cereus R309803], gi\|2... gi\|229199090, gi... - gi\|229199090\|ref\|ZP_04325773.1\| hypothetical protein bcere0001_46030 [Bacillus cereus m1293], gi\|228... gi\|228596192, gi... - gi\|229187182\|ref\|ZP_04314327.1\| hypothetical protein bcere0004_47180 [Bacillus cereus BGSC 6E1], gi\|... gi\|118480031, gi... - gi\|118480031\|ref\|YP_897182.1\| alkylphosphonate utilization operon protein [Bacillus thuringiensis st...	198.0	[0..1]	[112..8]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLPPCPQC NSEYTYEDGA LLVCPECAHE WSPNEAATAS DDGKVIKDSV GNVLQDGDTI  60
   61 TVIKDLKVKG SSLVVKVGTK VKNIRLVDGD HDIDCKIDGI GAMKLKSEFV RKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	2aklA
Description:	No description for 2aklA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits