YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39985474, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39985474, gi|....

Description	E-value	Query Range	Subject Range
gi\|32455844, gi\|... - gi\|32455844\|ref\|NP_862496.1\| hypothetical protein pADP-1_p059 [Pseudomonas sp. ADP], gi\|13937480\|gb\|...	216.0	[0..1]	[112..40]
gi\|93357622, gi\|... - gi\|94313770\|ref\|YP_586979.1\| alkylphosphonate utilization operon protein PhnA [Ralstonia metallidura...	215.0	[0..1]	[112..18]
gi\|112489956 - gi\|112489956\|pdb\|2AKL\|A Chain A, Solution Structure For Phn-A Like Protein Pa0128 From Pseudomonas A...	213.0	[0..2]	[112..25]
gi\|189404624, gi... - gi\|189404624\|ref\|ZP_03007529.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189405662, gi... - gi\|189405662\|ref\|ZP_03007901.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189402136, gi... - gi\|189402136\|ref\|ZP_03006599.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|26250923, gi\|... - gi\|26250923\|ref\|NP_756963.1\| PhnA protein [Escherichia coli CFT073], gi\|26111355\|gb\|AAN83537.1\|AE016... gi\|189403929, gi... - gi\|189403929\|ref\|ZP_03007271.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|188017530, gi... - gi\|188024665\|ref\|ZP_02997194.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189001787, gi... - gi\|189010207\|ref\|ZP_03006240.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|187769913, gi... - gi\|187775966\|ref\|ZP_02992780.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|110617441, gi... - gi\|110807893\|ref\|YP_691413.1\| hypothetical protein SFV_4122 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91075229, gi\|... - gi\|91213655\|ref\|YP_543641.1\| hypothetical protein UTI89_C4702 [Escherichia coli UTI89], gi\|91075229\|... gi\|218697810, gi... - gi\|218697810\|ref\|YP_002405477.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|218372758, gi... - gi\|218702772\|ref\|YP_002410401.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|208735568, gi... - gi\|208814291\|ref\|ZP_03255620.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|254037118, gi... - gi\|254037118\|ref\|ZP_04871195.1\| alkylphosphonate utilization operon protein PhnA [Escherichia sp. 1_... gi\|218561197, gi... - gi\|218561197\|ref\|YP_002394110.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|226901608, gi... - gi\|237703696\|ref\|ZP_04534177.1\| PhnA protein [Escherichia sp. 3_2_53FAA], gi\|226901608\|gb\|EEH87867.1... gi\|191172025, gi... - gi\|191173405\|ref\|ZP_03034934.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli F... gi\|208809010, gi... - gi\|208809010\|ref\|ZP_03251347.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O...	213.0	[0..3]	[112..51]
gi\|9945956, gi\|1... - gi\|9945956\|gb\|AAG03518.1\|AE004450_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g... gi\|218888873, gi... - gi\|218888873\|ref\|YP_002437737.1\| putative alkylphosphonate uptake protein [Pseudomonas aeruginosa LE... gi\|11347621 - pir\|\|A83631 conserved hypothetical protein PA0128 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116053849, gi... - gi\|32043280\|ref\|ZP_00140542.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|150964010, gi... - gi\|94416074\|ref\|ZP_01295905.1\| hypothetical protein PaerP_01002154 [Pseudomonas aeruginosa PA7], gi\|... gi\|107099120 - gi\|107099120\|ref\|ZP_01363038.1\| hypothetical protein PaerPA_01000129 [Pseudomonas aeruginosa PACS2] gi\|254237630, gi... - gi\|84318320\|ref\|ZP_00966745.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|194554220, gi... - gi\|84324736\|ref\|ZP_00972792.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho...	211.0	[0..1]	[112..1]
gi\|78222021, gi\|... - gi\|78222021\|ref\|YP_383768.1\| PhnA protein [Geobacter metallireducens GS-15], gi\|78193276\|gb\|ABB31043...	208.0	[0..1]	[113..1]
gi\|228923681, gi... - gi\|228923681\|ref\|ZP_04086959.1\| hypothetical protein bthur0011_46560 [Bacillus thuringiensis serovar... gi\|228842053, gi... - gi\|228917573\|ref\|ZP_04081117.1\| hypothetical protein bthur0012_47790 [Bacillus thuringiensis serovar... gi\|228936243, gi... - gi\|228936243\|ref\|ZP_04099042.1\| hypothetical protein bthur0009_46810 [Bacillus thuringiensis serovar... gi\|228829651, gi... - gi\|228929971\|ref\|ZP_04092982.1\| hypothetical protein bthur0010_46530 [Bacillus thuringiensis serovar... gi\|228961194, gi... - gi\|228961194\|ref\|ZP_04122815.1\| hypothetical protein bthur0005_46420 [Bacillus thuringiensis serovar... gi\|228804339, gi... - gi\|228955206\|ref\|ZP_04117214.1\| hypothetical protein bthur0006_45640 [Bacillus thuringiensis serovar... gi\|51974053, gi\|... - gi\|52140584\|ref\|YP_086246.1\| alkylphosphonate utilization operon protein [Bacillus cereus E33L], gi\|... gi\|229048636, gi... - gi\|229048636\|ref\|ZP_04194194.1\| hypothetical protein bcere0027_45950 [Bacillus cereus AH676], gi\|228... gi\|228988188, gi... - gi\|228988188\|ref\|ZP_04148285.1\| hypothetical protein bthur0001_48460 [Bacillus thuringiensis serovar... gi\|49181729, gi\|... - gi\|49187802\|ref\|YP_031055.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis st... gi\|228701106, gi... - gi\|229082188\|ref\|ZP_04214652.1\| hypothetical protein bcere0023_48060 [Bacillus cereus Rock4-2], gi\|2... gi\|49481015, gi\|... - gi\|49481015\|ref\|YP_038964.1\| alkylphosphonate utilization operon protein [Bacillus thuringiensis ser... gi\|228710407, gi... - gi\|229072431\|ref\|ZP_04205633.1\| hypothetical protein bcere0025_45920 [Bacillus cereus F65185], gi\|22... gi\|228671037, gi... - gi\|229112389\|ref\|ZP_04241927.1\| hypothetical protein bcere0018_46290 [Bacillus cereus Rock1-15], gi\|... gi\|229094045, gi... - gi\|229094045\|ref\|ZP_04225130.1\| hypothetical protein bcere0021_47610 [Bacillus cereus Rock3-42], gi\|... gi\|228653136, gi... - gi\|229130203\|ref\|ZP_04259162.1\| hypothetical protein bcere0015_46390 [Bacillus cereus BDRD-Cer4], gi... gi\|229124483, gi... - gi\|229124483\|ref\|ZP_04253668.1\| hypothetical protein bcere0016_47670 [Bacillus cereus 95/8201], gi\|2... gi\|229147487, gi... - gi\|229147487\|ref\|ZP_04275834.1\| hypothetical protein bcere0012_46160 [Bacillus cereus BDRD-ST24], gi... gi\|228641729, gi... - gi\|229141661\|ref\|ZP_04270191.1\| hypothetical protein bcere0013_47510 [Bacillus cereus BDRD-ST26], gi... gi\|65316934 - gi\|65316934\|ref\|ZP_00389893.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|229158543, gi... - gi\|229158543\|ref\|ZP_04286602.1\| hypothetical protein bcere0010_47160 [Bacillus cereus ATCC 4342], gi... gi\|228630230, gi... - gi\|229153131\|ref\|ZP_04281310.1\| hypothetical protein bcere0011_46610 [Bacillus cereus m1550], gi\|228... gi\|228607787, gi... - gi\|229175646\|ref\|ZP_04303154.1\| hypothetical protein bcere0006_47230 [Bacillus cereus MM3], gi\|22860... gi\|228619543, gi... - gi\|229163922\|ref\|ZP_04291862.1\| hypothetical protein bcere0009_46850 [Bacillus cereus R309803], gi\|2... gi\|229199090, gi... - gi\|229199090\|ref\|ZP_04325773.1\| hypothetical protein bcere0001_46030 [Bacillus cereus m1293], gi\|228... gi\|228596192, gi... - gi\|229187182\|ref\|ZP_04314327.1\| hypothetical protein bcere0004_47180 [Bacillus cereus BGSC 6E1], gi\|... gi\|118480031, gi... - gi\|118480031\|ref\|YP_897182.1\| alkylphosphonate utilization operon protein [Bacillus thuringiensis st...	207.0	[0..1]	[113..8]
gi\|163864852, gi... - gi\|89206085\|ref\|ZP_01184648.1\| PhnA protein [Bacillus weihenstephanensis KBAB4], gi\|89155987\|gb\|EAR7...	207.0	[0..1]	[113..1]
gi\|228903443, gi... - gi\|228903443\|ref\|ZP_04067570.1\| hypothetical protein bthur0014_46060 [Bacillus thuringiensis IBL 422... gi\|228817446, gi... - gi\|228942112\|ref\|ZP_04104652.1\| hypothetical protein bthur0008_47430 [Bacillus thuringiensis serovar... gi\|228910778, gi... - gi\|228910778\|ref\|ZP_04074587.1\| hypothetical protein bthur0013_49200 [Bacillus thuringiensis IBL 200... gi\|228975042, gi... - gi\|228975042\|ref\|ZP_04135601.1\| hypothetical protein bthur0003_47900 [Bacillus thuringiensis serovar... gi\|228791604, gi... - gi\|228968049\|ref\|ZP_04129055.1\| hypothetical protein bthur0004_48330 [Bacillus thuringiensis serovar... gi\|75758922, gi\|... - gi\|75758922\|ref\|ZP_00739033.1\| PhnA protein [Bacillus thuringiensis serovar israelensis ATCC 35646],... gi\|228777793, gi... - gi\|228981681\|ref\|ZP_04141976.1\| hypothetical protein bthur0002_48400 [Bacillus thuringiensis Bt407],...	206.0	[0..1]	[113..8]
gi\|108460710, gi... - gi\|108756830\|ref\|YP_634286.1\| alkylphosphonate utilization operon protein PhnA [Myxococcus xanthus D...	206.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLPACPQC SSEYTYEDGT MYVCPECAHE WPTAAPGESP EEQRVVRDAF GNVLSDGDSV  60
   61 TVIKDLKIKG SSSVVKVGTK VRNIRLVEGD HDIDCKIDGV GAMQLKSEFV KKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.045757
Match:	2aklA
Description:	No description for 2aklA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.584446042315417	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: