YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228923681, gi...
Organism:	Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228923681, gi....

Description	E-value	Query Range	Subject Range
gi\|228903443, gi... - gi\|228903443\|ref\|ZP_04067570.1\| hypothetical protein bthur0014_46060 [Bacillus thuringiensis IBL 422... gi\|228817446, gi... - gi\|228942112\|ref\|ZP_04104652.1\| hypothetical protein bthur0008_47430 [Bacillus thuringiensis serovar... gi\|228910778, gi... - gi\|228910778\|ref\|ZP_04074587.1\| hypothetical protein bthur0013_49200 [Bacillus thuringiensis IBL 200... gi\|228975042, gi... - gi\|228975042\|ref\|ZP_04135601.1\| hypothetical protein bthur0003_47900 [Bacillus thuringiensis serovar... gi\|228791604, gi... - gi\|228968049\|ref\|ZP_04129055.1\| hypothetical protein bthur0004_48330 [Bacillus thuringiensis serovar... gi\|75758922, gi\|... - gi\|75758922\|ref\|ZP_00739033.1\| PhnA protein [Bacillus thuringiensis serovar israelensis ATCC 35646],... gi\|228777793, gi... - gi\|228981681\|ref\|ZP_04141976.1\| hypothetical protein bthur0002_48400 [Bacillus thuringiensis Bt407],...	219.0	[0..1]	[120..1]
gi\|32455844, gi\|... - gi\|32455844\|ref\|NP_862496.1\| hypothetical protein pADP-1_p059 [Pseudomonas sp. ADP], gi\|13937480\|gb\|...	217.0	[0..8]	[119..40]
gi\|189404624, gi... - gi\|189404624\|ref\|ZP_03007529.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189405662, gi... - gi\|189405662\|ref\|ZP_03007901.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189402136, gi... - gi\|189402136\|ref\|ZP_03006599.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|26250923, gi\|... - gi\|26250923\|ref\|NP_756963.1\| PhnA protein [Escherichia coli CFT073], gi\|26111355\|gb\|AAN83537.1\|AE016... gi\|189403929, gi... - gi\|189403929\|ref\|ZP_03007271.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|188017530, gi... - gi\|188024665\|ref\|ZP_02997194.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|189001787, gi... - gi\|189010207\|ref\|ZP_03006240.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|187769913, gi... - gi\|187775966\|ref\|ZP_02992780.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|110617441, gi... - gi\|110807893\|ref\|YP_691413.1\| hypothetical protein SFV_4122 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91075229, gi\|... - gi\|91213655\|ref\|YP_543641.1\| hypothetical protein UTI89_C4702 [Escherichia coli UTI89], gi\|91075229\|... gi\|218697810, gi... - gi\|218697810\|ref\|YP_002405477.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|218372758, gi... - gi\|218702772\|ref\|YP_002410401.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|208735568, gi... - gi\|208814291\|ref\|ZP_03255620.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O... gi\|254037118, gi... - gi\|254037118\|ref\|ZP_04871195.1\| alkylphosphonate utilization operon protein PhnA [Escherichia sp. 1_... gi\|218561197, gi... - gi\|218561197\|ref\|YP_002394110.1\| putative alkylphosphonate uptake protein in phosphonate metabolism ... gi\|226901608, gi... - gi\|237703696\|ref\|ZP_04534177.1\| PhnA protein [Escherichia sp. 3_2_53FAA], gi\|226901608\|gb\|EEH87867.1... gi\|191172025, gi... - gi\|191173405\|ref\|ZP_03034934.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli F... gi\|208809010, gi... - gi\|208809010\|ref\|ZP_03251347.1\| alkylphosphonate utilization operon protein PhnA [Escherichia coli O...	214.0	[0..6]	[119..47]
gi\|112489956 - gi\|112489956\|pdb\|2AKL\|A Chain A, Solution Structure For Phn-A Like Protein Pa0128 From Pseudomonas A...	213.0	[0..9]	[119..25]
gi\|93357622, gi\|... - gi\|94313770\|ref\|YP_586979.1\| alkylphosphonate utilization operon protein PhnA [Ralstonia metallidura...	212.0	[0..8]	[119..18]
gi\|9945956, gi\|1... - gi\|9945956\|gb\|AAG03518.1\|AE004450_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g... gi\|218888873, gi... - gi\|218888873\|ref\|YP_002437737.1\| putative alkylphosphonate uptake protein [Pseudomonas aeruginosa LE... gi\|11347621 - pir\|\|A83631 conserved hypothetical protein PA0128 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116053849, gi... - gi\|32043280\|ref\|ZP_00140542.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|150964010, gi... - gi\|94416074\|ref\|ZP_01295905.1\| hypothetical protein PaerP_01002154 [Pseudomonas aeruginosa PA7], gi\|... gi\|107099120 - gi\|107099120\|ref\|ZP_01363038.1\| hypothetical protein PaerPA_01000129 [Pseudomonas aeruginosa PACS2] gi\|254237630, gi... - gi\|84318320\|ref\|ZP_00966745.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho... gi\|194554220, gi... - gi\|84324736\|ref\|ZP_00972792.1\| COG2824: Uncharacterized Zn-ribbon-containing protein involved in pho...	212.0	[0..8]	[119..1]
gi\|39985474, gi\|... - gi\|39998527\|ref\|NP_954478.1\| hypothetical protein GSU3438 [Geobacter sulfurreducens PCA], gi\|3998547...	209.0	[0..8]	[120..1]
gi\|67078298, gi\|... - gi\|67078298\|ref\|YP_245918.1\| alkylphosphonate uptake protein [Bacillus cereus E33L], gi\|66970604\|gb\|...	208.0	[0..2]	[119..4]
gi\|163864852, gi... - gi\|89206085\|ref\|ZP_01184648.1\| PhnA protein [Bacillus weihenstephanensis KBAB4], gi\|89155987\|gb\|EAR7...	208.0	[0..8]	[120..1]
gi\|177652284, gi... - gi\|177652284\|ref\|ZP_02934787.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|170128050, gi... - gi\|170706947\|ref\|ZP_02897404.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|195994402, gi... - gi\|196032973\|ref\|ZP_03100386.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus W]... gi\|190567204, gi... - gi\|190567204\|ref\|ZP_03020119.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|206970135, gi... - gi\|206970135\|ref\|ZP_03231088.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus AH... gi\|196044010, gi... - gi\|196044010\|ref\|ZP_03111247.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus 03... gi\|217063399, gi... - gi\|217962408\|ref\|YP_002340980.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus A... gi\|206976382, gi... - gi\|206976382\|ref\|ZP_03237289.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus H3... gi\|167635005, gi... - gi\|167635005\|ref\|ZP_02393323.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|164713464, gi... - gi\|165870955\|ref\|ZP_02215607.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|170685797, gi... - gi\|170685797\|ref\|ZP_02877020.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|167512130, gi... - gi\|167640049\|ref\|ZP_02398317.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|225790618, gi... - gi\|225866916\|ref\|YP_002752294.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus 0... gi\|227007096, gi... - gi\|227817714\|ref\|YP_002817723.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthraci... gi\|229268296, gi... - gi\|229603888\|ref\|YP_002869186.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthraci... gi\|254687276 - gi\|254687276\|ref\|ZP_05151133.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|254725288 - gi\|254725288\|ref\|ZP_05187071.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|254735387 - gi\|254735387\|ref\|ZP_05193095.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|254740654 - gi\|254740654\|ref\|ZP_05198345.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|218906139, gi... - gi\|218906139\|ref\|YP_002453973.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus A... gi\|254753084 - gi\|254753084\|ref\|ZP_05205120.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|218235364, gi... - gi\|218235364\|ref\|YP_002369742.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus B... gi\|254761426 - gi\|254761426\|ref\|ZP_05213447.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis... gi\|221242452, gi... - gi\|222098393\|ref\|YP_002532451.1\| alkylphosphonate utilization operon protein [Bacillus cereus Q1], g... gi\|30022983, gi\|... - gi\|30022983\|ref\|NP_834614.1\| PhnA protein [Bacillus cereus ATCC 14579], gi\|29898543\|gb\|AAP11815.1\| P... gi\|21397424 - ref\|NP_653409.1\| TFIIE_alpha, TFIIE alpha subunit [Bacillus anthracis str. A2012] gi\|47566977, gi\|... - gi\|47566977\|ref\|ZP_00237694.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus G92... gi\|47530483, gi\|... - gi\|47530483\|ref\|YP_021832.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis st... gi\|42740057, gi\|... - gi\|42784126\|ref\|NP_981373.1\| alkylphosphonate utilization operon protein PhnA [Bacillus cereus ATCC ... gi\|30264983, gi\|... - gi\|30264983\|ref\|NP_847360.1\| alkylphosphonate utilization operon protein PhnA [Bacillus anthracis st...	206.0	[0..8]	[120..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGNEFMAT LPNCPKCNSE YTYEDGVLFV CPECAHEWGQ EAEAENNDGA KVVKDANGNV  60
   61 LQDGDAVTVI KDLKVKGTSS VVKIGTKVKS IRLVDGDHDI DCKIDGFGAM KLKSQFVKKA 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2aklA
Description:	No description for 2aklA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits