YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167420102, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167420102, gi....

Description	E-value	Query Range	Subject Range
RNFG_PHOLL - Electron transport complex protein rnfG OS=Photorhabdus luminescens subsp. laumondii GN=rnfG PE=3 SV... ETCG_PHOLL - Electron transport complex subunit G OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 ...	238.0	[0..1]	[207..1]
gi\|197093977, gi... - gi\|197362500\|ref\|YP_002142137.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... RNFG_SALTI - Electron transport complex protein rnfG OS=Salmonella typhi GN=rnfG PE=3 SV=1 gi\|29137410, gi\|... - gi\|29141782\|ref\|NP_805124.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|16760458 - gi\|16760458\|ref\|NP_456075.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... RSXG_SALTI - Electron transport complex subunit RsxG OS=Salmonella typhi GN=rsxG PE=3 SV=1 gi\|56127833, gi\|... - gi\|56413576\|ref\|YP_150651.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|213616228 - gi\|213616228\|ref\|ZP_03372054.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213649170 - gi\|213649170\|ref\|ZP_03379223.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213855039 - gi\|213855039\|ref\|ZP_03383279.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|214000277 - gi\|214000277\|ref\|ZP_03411012.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213051631 - gi\|213051631\|ref\|ZP_03344509.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213420536 - gi\|213420536\|ref\|ZP_03353602.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213425983 - gi\|213425983\|ref\|ZP_03358733.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213583113 - gi\|213583113\|ref\|ZP_03364939.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ...	232.0	[0..1]	[207..1]
gi\|238913144 - gi\|238913144\|ref\|ZP_04656981.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... RSXG_SALTY - Electron transport complex subunit RsxG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|207857041, gi... - gi\|207857041\|ref\|YP_002243692.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|224468563, gi... - gi\|224584036\|ref\|YP_002637834.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|197264186, gi... - gi\|197264186\|ref\|ZP_03164260.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197940631, gi... - gi\|198246115\|ref\|YP_002215680.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|199603199, gi... - gi\|200390754\|ref\|ZP_03217365.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|205272613, gi... - gi\|205352832\|ref\|YP_002226633.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205343738, gi... - gi\|205343738\|gb\|EDZ30502.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|194444890, gi... - gi\|194444890\|ref\|YP_002040704.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=ydgP] [protein=electron transport complex protein RnfG] [protein_id=YP_005237326.1] [location=... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|194472496, gi... - gi\|194472496\|ref\|ZP_03078480.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197212633, gi... - gi\|197248930\|ref\|YP_002146590.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205327827, gi... - gi\|205327827\|gb\|EDZ14591.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|205335379, gi... - gi\|205335379\|gb\|EDZ22143.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|62127676, gi\|... - gi\|62180043\|ref\|YP_216460.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|205346963, gi... - gi\|205346963\|gb\|EDZ33594.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|168463133, gi... - gi\|195634567\|gb\|EDX52919.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|167551574, gi... - gi\|205323588\|gb\|EDZ11427.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente...	231.0	[0..1]	[207..1]
gi\|89103500 - gi\|89103500\|ref\|ZP_01176074.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Yers... gi\|77636250 - gi\|77636250\|ref\|ZP_00798326.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Yers...	230.0	[0..5]	[209..1]
gi\|253324455, gi... - gi\|254288482\|ref\|YP_003054230.1\| electron transport complex protein RnfG [Escherichia coli BL21(DE3)... gi\|124499986, gi... - gi\|124529212\|ref\|ZP_01700287.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|242377362, gi... - gi\|251785089\|ref\|YP_002999393.1\| hypothetical protein B21_01591 [Escherichia coli BL21], gi\|24237736... gi\|83587966, gi\|... - gi\|83587966\|ref\|ZP_00926592.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|253973594, gi... - gi\|254161693\|ref\|YP_003044801.1\| electron transport complex protein RnfG [Escherichia coli B str. RE... gi\|170020017, gi... - gi\|170020017\|ref\|YP_001724971.1\| electron transport complex protein RnfG [Escherichia coli ATCC 8739...	230.0	[0..1]	[207..1]
gi\|77629239, gi\|... - gi\|77629239\|ref\|ZP_00791825.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Yers...	230.0	[0..5]	[209..1]
gi\|157161093, gi... - gi\|75195711\|ref\|ZP_00705781.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch...	230.0	[0..1]	[207..1]
gi\|73855519, gi\|... - gi\|74312042\|ref\|YP_310461.1\| electron transport complex protein RnfG [Shigella sonnei Ss046], gi\|738...	230.0	[0..1]	[207..1]
EG13937 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport... gi\|194431822, gi... - gi\|83571017\|ref\|ZP_00922459.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Shig... RNFG_ECOLI - Electron transport complex protein rnfG - Escherichia coli EG13937 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport... gi\|238900847, gi... - gi\|238900847\|ref\|YP_002926643.1\| putative oxidoreductase [Escherichia coli BW2952], gi\|238862742\|gb\|... gi\|170081295, gi... - gi\|170081295\|ref\|YP_001730615.1\| oxidoreductase [Escherichia coli str. K-12 substr. DH10B], gi\|16988... gi\|187428246, gi... - gi\|75178473\|ref\|ZP_00698519.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Shig... gi\|157156662, gi... - gi\|75190671\|ref\|ZP_00703938.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|75212968, gi\|... - gi\|75212968\|ref\|ZP_00712966.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|191165896, gi... - gi\|75230920\|ref\|ZP_00717369.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|1742689, gi\|8... - gi\|89108473\|ref\|AP_002253.1\| predicted oxidoreductase [Escherichia coli str. K-12 substr. W3110], gi... gi\|75257050, gi\|... - gi\|75257050\|ref\|ZP_00728610.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|75512936, gi\|... - gi\|75512936\|ref\|ZP_00735417.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|81245412, gi\|... - gi\|82544001\|ref\|YP_407948.1\| electron transport complex protein RnfG [Shigella boydii Sb227], gi\|812...	230.0	[0..1]	[207..1]
gi\|110615152, gi... - gi\|110805604\|ref\|YP_689124.1\| electron transport complex protein RnfG [Shigella flexneri 5 str. 8401... gi\|24051985, gi\|... - gi\|24113021\|ref\|NP_707531.1\| electron transport complex protein RnfG [Shigella flexneri 2a str. 301]... gi\|30063146, gi\|... - gi\|30063146\|ref\|NP_837317.1\| electron transport complex protein RnfG [Shigella flexneri 2a str. 2457...	230.0	[0..1]	[207..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTMRRHGI TLALFAAGAT GLTAVVNSLT ENTIAHQAAL QQKALLDQVV PAENYDNDMQ  60
   61 AECYVVTDSA LGNMAPHRLY LARKGNQPVA AAIETTA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDGYSGAIQL LVGADFHGNV LGSRVIEHHE TPGLGDKIDI RISDWINHFS GQHVTGDDDK  60
   61 RWAVKKDGGS FDQFTGATIT PRAVVRAVKN AALYLQTLPP QLSRLPSCGE DQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.49485
Match:	PF04205.5
Description:	No description for PF04205.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits