YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213649170
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213649170.

Description	E-value	Query Range	Subject Range
gi\|238913144 - gi\|238913144\|ref\|ZP_04656981.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... RSXG_SALTY - Electron transport complex subunit RsxG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|207857041, gi... - gi\|207857041\|ref\|YP_002243692.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|224468563, gi... - gi\|224584036\|ref\|YP_002637834.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|197264186, gi... - gi\|197264186\|ref\|ZP_03164260.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197940631, gi... - gi\|198246115\|ref\|YP_002215680.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|199603199, gi... - gi\|200390754\|ref\|ZP_03217365.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|205272613, gi... - gi\|205352832\|ref\|YP_002226633.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205343738, gi... - gi\|205343738\|gb\|EDZ30502.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|194444890, gi... - gi\|194444890\|ref\|YP_002040704.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=ydgP] [protein=electron transport complex protein RnfG] [protein_id=YP_005237326.1] [location=... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|194472496, gi... - gi\|194472496\|ref\|ZP_03078480.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197212633, gi... - gi\|197248930\|ref\|YP_002146590.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205327827, gi... - gi\|205327827\|gb\|EDZ14591.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|205335379, gi... - gi\|205335379\|gb\|EDZ22143.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|62127676, gi\|... - gi\|62180043\|ref\|YP_216460.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|205346963, gi... - gi\|205346963\|gb\|EDZ33594.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|168463133, gi... - gi\|195634567\|gb\|EDX52919.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|167551574, gi... - gi\|205323588\|gb\|EDZ11427.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente...	1.0E-64	[1..206]	[1..206]
gi\|157161093, gi... - gi\|75195711\|ref\|ZP_00705781.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch...	4.0E-62	[1..206]	[1..206]
gi\|253324455, gi... - gi\|254288482\|ref\|YP_003054230.1\| electron transport complex protein RnfG [Escherichia coli BL21(DE3)... gi\|124499986, gi... - gi\|124529212\|ref\|ZP_01700287.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|242377362, gi... - gi\|251785089\|ref\|YP_002999393.1\| hypothetical protein B21_01591 [Escherichia coli BL21], gi\|24237736... gi\|83587966, gi\|... - gi\|83587966\|ref\|ZP_00926592.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|253973594, gi... - gi\|254161693\|ref\|YP_003044801.1\| electron transport complex protein RnfG [Escherichia coli B str. RE... gi\|170020017, gi... - gi\|170020017\|ref\|YP_001724971.1\| electron transport complex protein RnfG [Escherichia coli ATCC 8739...	5.0E-62	[1..206]	[1..206]
gi\|73855519, gi\|... - gi\|74312042\|ref\|YP_310461.1\| electron transport complex protein RnfG [Shigella sonnei Ss046], gi\|738...	6.0E-62	[1..206]	[1..206]
EG13937 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport... gi\|194431822, gi... - gi\|83571017\|ref\|ZP_00922459.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Shig... RNFG_ECOLI - Electron transport complex protein rnfG - Escherichia coli EG13937 - SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport... gi\|238900847, gi... - gi\|238900847\|ref\|YP_002926643.1\| putative oxidoreductase [Escherichia coli BW2952], gi\|238862742\|gb\|... gi\|170081295, gi... - gi\|170081295\|ref\|YP_001730615.1\| oxidoreductase [Escherichia coli str. K-12 substr. DH10B], gi\|16988... gi\|187428246, gi... - gi\|75178473\|ref\|ZP_00698519.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Shig... gi\|157156662, gi... - gi\|75190671\|ref\|ZP_00703938.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|75212968, gi\|... - gi\|75212968\|ref\|ZP_00712966.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|191165896, gi... - gi\|75230920\|ref\|ZP_00717369.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|1742689, gi\|8... - gi\|89108473\|ref\|AP_002253.1\| predicted oxidoreductase [Escherichia coli str. K-12 substr. W3110], gi... gi\|75257050, gi\|... - gi\|75257050\|ref\|ZP_00728610.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|75512936, gi\|... - gi\|75512936\|ref\|ZP_00735417.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|81245412, gi\|... - gi\|82544001\|ref\|YP_407948.1\| electron transport complex protein RnfG [Shigella boydii Sb227], gi\|812...	9.0E-62	[1..206]	[1..206]
RNFG_PHOLL - Electron transport complex protein rnfG OS=Photorhabdus luminescens subsp. laumondii GN=rnfG PE=3 SV... ETCG_PHOLL - Electron transport complex subunit G OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 ...	1.0E-61	[1..206]	[1..207]
gi\|81241253, gi\|... - gi\|82777105\|ref\|YP_403454.1\| electron transport complex protein RnfG [Shigella dysenteriae Sd197], g...	1.0E-61	[1..206]	[1..206]
gi\|110615152, gi... - gi\|110805604\|ref\|YP_689124.1\| electron transport complex protein RnfG [Shigella flexneri 5 str. 8401... gi\|24051985, gi\|... - gi\|24113021\|ref\|NP_707531.1\| electron transport complex protein RnfG [Shigella flexneri 2a str. 301]... gi\|30063146, gi\|... - gi\|30063146\|ref\|NP_837317.1\| electron transport complex protein RnfG [Shigella flexneri 2a str. 2457...	1.0E-61	[1..206]	[1..206]
gi\|25321386, gi\|... - pir\|\|H85769 hypothetical protein Z2640 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12515620, gi\|... - gi\|15802045\|ref\|NP_288067.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 EDL93... gi\|209400825, gi... - gi\|209400825\|ref\|YP_002270701.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia ... gi\|217328875, gi... - gi\|217328875\|ref\|ZP_03444956.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|195939020 - gi\|195939020\|ref\|ZP_03084402.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 st... gi\|208810445, gi... - gi\|208810445\|ref\|ZP_03252321.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|208731188, gi... - gi\|208816845\|ref\|ZP_03257965.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... RSXG_ECO57 - Electron transport complex subunit RsxG OS=Escherichia coli O157:H7 GN=rsxG PE=3 SV=1 gi\|208739364, gi... - gi\|208819241\|ref\|ZP_03259561.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|187768692, gi... - gi\|187768692\|gb\|EDU32536.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|188999229, gi... - gi\|188999229\|gb\|EDU68215.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189370955, gi... - gi\|189370955\|gb\|EDU89371.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189376893, gi... - gi\|189376893\|gb\|EDU95309.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168750555, gi... - gi\|188015260\|gb\|EDU53382.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189355560, gi... - gi\|189355560\|gb\|EDU73979.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168763665, gi... - gi\|189366184\|gb\|EDU84600.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168771173, gi... - gi\|189360035\|gb\|EDU78454.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|15831594, gi\|... - gi\|15831594\|ref\|NP_310367.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 str. ... gi\|254793248, gi... - gi\|254793248\|ref\|YP_003078085.1\| electron transport complex protein [Escherichia coli O157:H7 str. T...	2.0E-61	[1..206]	[1..206]
gi\|209918944, gi... - gi\|209918944\|ref\|YP_002293028.1\| electron transport complex protein RnfG [Escherichia coli SE11], gi... gi\|193070232, gi... - gi\|75234944\|ref\|ZP_00719223.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch...	2.0E-61	[1..206]	[1..206]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTIRKHGI TLALFAAGST GLTAVINQMT KSTIHEQALQ QQHALFDQVL PPDRYNNNLQ  60
   61 ESCYLVDAPA LGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.393	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.383	g.34.1	HIV-1 VPU cytoplasmic domain
View	Download	0.366	a.140.4	Recombination endonuclease VII, C-terminal and dimerization domains
View	Download	0.250	a.4.1	Homeodomain-like
View	Download	0.218	a.4.1	Homeodomain-like

Predicted Domain #2

Region A:
Residues: [74-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTHRVFIARK DDKPVAAIIE ATAPDGYSGA IQLIVGADFN GTILGTRVTE HHETPGLGDK  60
   61 IERRLSDWIT HFSGKTISGE NDTHWAVKKD GGDFDQFTGA TITPRAVVNA VKRAGLYAES 120
  121 LPAQLPHLTA CGE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.244125
Match:	PF04205.5
Description:	No description for PF04205.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.575	0.114	FMN binding	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.505	0.040	FMN binding	a.74.1	Cyclin-like
View	Download	0.539	0.009	FMN binding	d.18.1	ssDNA-binding transcriptional regulator domain
View	Download	0.666	N/A	N/A	c.55.5	MTH1175-like
View	Download	0.497	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits