YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170081295, gi...
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170081295, gi....

Description	E-value	Query Range	Subject Range
gi\|197093977, gi... - gi\|197362500\|ref\|YP_002142137.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... RNFG_SALTI - Electron transport complex protein rnfG OS=Salmonella typhi GN=rnfG PE=3 SV=1 gi\|29137410, gi\|... - gi\|29141782\|ref\|NP_805124.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|16760458 - gi\|16760458\|ref\|NP_456075.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... RSXG_SALTI - Electron transport complex subunit RsxG OS=Salmonella typhi GN=rsxG PE=3 SV=1 gi\|56127833, gi\|... - gi\|56413576\|ref\|YP_150651.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|213616228 - gi\|213616228\|ref\|ZP_03372054.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213649170 - gi\|213649170\|ref\|ZP_03379223.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213855039 - gi\|213855039\|ref\|ZP_03383279.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|214000277 - gi\|214000277\|ref\|ZP_03411012.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213051631 - gi\|213051631\|ref\|ZP_03344509.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213420536 - gi\|213420536\|ref\|ZP_03353602.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213425983 - gi\|213425983\|ref\|ZP_03358733.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|213583113 - gi\|213583113\|ref\|ZP_03364939.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ...	233.0	[0..1]	[206..1]
gi\|238913144 - gi\|238913144\|ref\|ZP_04656981.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... RSXG_SALTY - Electron transport complex subunit RsxG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|207857041, gi... - gi\|207857041\|ref\|YP_002243692.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|224468563, gi... - gi\|224584036\|ref\|YP_002637834.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|197264186, gi... - gi\|197264186\|ref\|ZP_03164260.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197940631, gi... - gi\|198246115\|ref\|YP_002215680.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|199603199, gi... - gi\|200390754\|ref\|ZP_03217365.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|205272613, gi... - gi\|205352832\|ref\|YP_002226633.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205343738, gi... - gi\|205343738\|gb\|EDZ30502.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|194444890, gi... - gi\|194444890\|ref\|YP_002040704.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=ydgP] [protein=electron transport complex protein RnfG] [protein_id=YP_005237326.1] [location=... RNFG_SALTY - Electron transport complex protein rnfG OS=Salmonella typhimurium GN=rnfG PE=3 SV=1 gi\|194472496, gi... - gi\|194472496\|ref\|ZP_03078480.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ... gi\|197212633, gi... - gi\|197248930\|ref\|YP_002146590.1\| electron transport complex protein RnfG [Salmonella enterica subsp.... gi\|205327827, gi... - gi\|205327827\|gb\|EDZ14591.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|205335379, gi... - gi\|205335379\|gb\|EDZ22143.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|62127676, gi\|... - gi\|62180043\|ref\|YP_216460.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ent... gi\|205346963, gi... - gi\|205346963\|gb\|EDZ33594.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|168463133, gi... - gi\|195634567\|gb\|EDX52919.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente... gi\|167551574, gi... - gi\|205323588\|gb\|EDZ11427.1\| electron transport complex protein RnfG [Salmonella enterica subsp. ente...	232.0	[0..1]	[206..1]
gi\|253324455, gi... - gi\|254288482\|ref\|YP_003054230.1\| electron transport complex protein RnfG [Escherichia coli BL21(DE3)... gi\|124499986, gi... - gi\|124529212\|ref\|ZP_01700287.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|242377362, gi... - gi\|251785089\|ref\|YP_002999393.1\| hypothetical protein B21_01591 [Escherichia coli BL21], gi\|24237736... gi\|83587966, gi\|... - gi\|83587966\|ref\|ZP_00926592.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|253973594, gi... - gi\|254161693\|ref\|YP_003044801.1\| electron transport complex protein RnfG [Escherichia coli B str. RE... gi\|170020017, gi... - gi\|170020017\|ref\|YP_001724971.1\| electron transport complex protein RnfG [Escherichia coli ATCC 8739...	232.0	[0..1]	[206..1]
gi\|157161093, gi... - gi\|75195711\|ref\|ZP_00705781.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch...	231.0	[0..1]	[206..1]
RNFG_PHOLL - Electron transport complex protein rnfG OS=Photorhabdus luminescens subsp. laumondii GN=rnfG PE=3 SV... ETCG_PHOLL - Electron transport complex subunit G OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 ...	230.0	[0..1]	[206..1]
gi\|81241253, gi\|... - gi\|82777105\|ref\|YP_403454.1\| electron transport complex protein RnfG [Shigella dysenteriae Sd197], g...	230.0	[0..1]	[206..1]
gi\|110615152, gi... - gi\|110805604\|ref\|YP_689124.1\| electron transport complex protein RnfG [Shigella flexneri 5 str. 8401... gi\|24051985, gi\|... - gi\|24113021\|ref\|NP_707531.1\| electron transport complex protein RnfG [Shigella flexneri 2a str. 301]... gi\|30063146, gi\|... - gi\|30063146\|ref\|NP_837317.1\| electron transport complex protein RnfG [Shigella flexneri 2a str. 2457...	230.0	[0..1]	[206..1]
gi\|26108281, gi\|... - gi\|26247878\|ref\|NP_753918.1\| electron transport complex protein RnfG [Escherichia coli CFT073], gi\|2... gi\|190906268, gi... - gi\|75238808\|ref\|ZP_00722792.1\| COG4659: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Esch... gi\|117623817, gi... - gi\|117623817\|ref\|YP_852730.1\| electron transport complex protein RnfG [Escherichia coli APEC O1], gi... gi\|91210844, gi\|... - gi\|91210844\|ref\|YP_540830.1\| electron transport complex protein RnfG [Escherichia coli UTI89], gi\|91... gi\|110641754, gi... - gi\|110641754\|ref\|YP_669484.1\| electron transport complex protein RnfG [Escherichia coli 536], gi\|110... gi\|215264880, gi... - gi\|215486808\|ref\|YP_002329239.1\| electron transport complex protein RnfG [Escherichia coli O127:H6 s... gi\|218558502, gi... - gi\|218558502\|ref\|YP_002391415.1\| electron transport complex protein RnfG [Escherichia coli S88], gi\|... gi\|227837132, gi... - gi\|227885953\|ref\|ZP_04003758.1\| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972], gi\|2278371... gi\|237705574, gi... - gi\|237705574\|ref\|ZP_04536055.1\| electron transport complex protein RnfG [Escherichia sp. 3_2_53FAA],...	230.0	[0..1]	[206..1]
gi\|73855519, gi\|... - gi\|74312042\|ref\|YP_310461.1\| electron transport complex protein RnfG [Shigella sonnei Ss046], gi\|738...	229.0	[0..1]	[206..1]
gi\|25321386, gi\|... - pir\|\|H85769 hypothetical protein Z2640 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12515620, gi\|... - gi\|15802045\|ref\|NP_288067.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 EDL93... gi\|209400825, gi... - gi\|209400825\|ref\|YP_002270701.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia ... gi\|217328875, gi... - gi\|217328875\|ref\|ZP_03444956.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|195939020 - gi\|195939020\|ref\|ZP_03084402.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 st... gi\|208810445, gi... - gi\|208810445\|ref\|ZP_03252321.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|208731188, gi... - gi\|208816845\|ref\|ZP_03257965.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... RSXG_ECO57 - Electron transport complex subunit RsxG OS=Escherichia coli O157:H7 GN=rsxG PE=3 SV=1 gi\|208739364, gi... - gi\|208819241\|ref\|ZP_03259561.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia c... gi\|187768692, gi... - gi\|187768692\|gb\|EDU32536.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|188999229, gi... - gi\|188999229\|gb\|EDU68215.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189370955, gi... - gi\|189370955\|gb\|EDU89371.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189376893, gi... - gi\|189376893\|gb\|EDU95309.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168750555, gi... - gi\|188015260\|gb\|EDU53382.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|189355560, gi... - gi\|189355560\|gb\|EDU73979.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168763665, gi... - gi\|189366184\|gb\|EDU84600.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|168771173, gi... - gi\|189360035\|gb\|EDU78454.1\| electron transport complex, RnfABCDGE type, G subunit [Escherichia coli ... gi\|15831594, gi\|... - gi\|15831594\|ref\|NP_310367.1\| electron transport complex protein RnfG [Escherichia coli O157:H7 str. ... gi\|254793248, gi... - gi\|254793248\|ref\|YP_003078085.1\| electron transport complex protein [Escherichia coli O157:H7 str. T...	229.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKTIRKHGI TLALFAAGST GLTAAINQMT KTTIAEQASL QQKALFDQVL PAERYNNALA  60
   61 QSCYLVTAPE LGKGEHRVYI AKQDDKPVAA VLEATA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDGYSGAIQL LVGADFNGTV LGTRVTEHHE TPGLGDKIEL RLSDWITHFA GKKISGADDA  60
   61 HWAVKKDGGD FDQFTGATIT PRAVVNAVKR AGLYAQTLPA QLSQLPACGE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.221849
Match:	PF04205.5
Description:	No description for PF04205.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits