D parc

DTASelect v1.9
/data/1/aobailey/Antczak/3829_02282005/parc
/scratch/yates/yrcdb/yeastorf5.fasta
SEQUEST 2.7 in SQT format.

Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
1.8	Minimum +1 XCorr
2.5	Minimum +2 XCorr
3.5	Minimum +3 XCorr
0.08	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

ORFP:YJL115W

46.2%

279

31603

4.0

ASF1 SGDID:S0003651, Chr X from 195986-196825

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3829_02282005-03.03034.03034.2	5.8309	0.4729	2268.67	2269.476	1	2148.9	70.6%	12	K.FTDPYEFEITFECLESLK.H	2
*	PARC_3829_02282005-03.01430.01430.2	5.2082	0.4528	2332.25	2332.616	1	1453.4	61.9%	9	R.SLDHDQELDSILVGPVPVGVNK.F	2
*	PARC_3829_02282005-03.01432.01432.3	5.2516	0.1924	2332.28	2332.616	1	1175.2	40.5%	1	R.SLDHDQELDSILVGPVPVGVNK.F	3
*	PARC_3829_02282005-03.01440.01440.1	2.2285	0.369	965.77	966.169	1	449.8	66.7%	1	L.VGPVPVGVNK.F	1
*	PARC_3829_02282005-03.01435.01435.1	1.9158	0.2235	866.77	867.036	1	329.1	68.8%	1	V.GPVPVGVNK.F	1
*	PARC_3829_02282005-02.03582.03582.3	4.721	0.4165	3541.73	3541.986	1	857.9	26.6%	7	K.FVFSADPPSAELIPASELVSVTVILLSCSYDGR.E	3
*	PARC_3829_02282005-03.00806.00806.2	4.4772	0.538	1892.71	1892.973	1	1091.5	71.4%	2	R.VGYYVNNEYDEEELR.E	2
*	PARC_3829_02282005-04.00764.00764.2	4.7177	0.4106	2529.25	2529.679	1	1334.6	55.0%	5	R.VGYYVNNEYDEEELRENPPAK.V	2
*	PARC_3829_02282005-05.00847.00847.2	2.7435	0.323	969.09	966.128	1	753.4	92.9%	2	K.VQVDHIVR.N	2
*	PARC_3829_02282005-05.00744.00744.1	2.1073	0.2134	941.14	941.118	4	221.1	78.6%	1	R.NILAEKPR.V	1
*	PARC_3829_02282005-05.00871.00871.2	3.6212	0.3176	1618.93	1618.784	1	991.5	64.3%	4	R.RKIEGGSTDIESTPK.D	2
*	PARC_3829_02282005-05.00879.00879.2	4.0592	0.3837	2031.75	2032.218	1	792.4	52.8%	1	R.RKIEGGSTDIESTPKDAAR.S	2
*	PARC_3829_02282005-05.00875.00875.3	4.4451	0.1912	2032.79	2032.218	1	1181.4	41.7%	1	R.RKIEGGSTDIESTPKDAAR.S	3
*	PARC_3829_02282005-04.00752.00752.2	4.7236	0.4068	1463.21	1462.597	1	1745.2	84.6%	5	R.KIEGGSTDIESTPK.D	2
*	PARC_3829_02282005-04.00756.00756.2	5.2768	0.4771	1876.99	1876.031	1	1602.4	64.7%	1	R.KIEGGSTDIESTPKDAAR.S	2

U	ORFP:YLR441C	3	3	20.4%	255	28743	10.0	RPS1A SGDID:S0004433, Chr XII from 1018903-1018136, reverse complement
U	ORFP:YML063W	3	3	20.4%	255	28812	10.0	RPS1B SGDID:S0004528, Chr XIII from 146482-147249

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_3829_02282005-04.00773.00773.2	3.0883	0.3921	2189.93	2190.384	3	466.9	38.9%	1	R.VVEVCLADLQGSEDHSFRK.I	2
PARC_3829_02282005-04.01517.01517.2	4.4943	0.5507	1754.93	1754.955	1	1867.9	75.0%	1	K.NLLTNFHGMDFTTDK.L	2
PARC_3829_02282005-03.01414.01414.2	3.9695	0.4352	1847.97	1848.037	1	1073.6	61.8%	1	K.FDVGALMALHGEGSGEEK.G	2

gi|7463016|pir||S77957

11.9%

269

27961

6.7

lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3829_02282005-05.00731.00731.2	4.5379	0.5239	1921.47	1921.079	1	1348.1	58.8%	3	R.DQNFAGATAIHHPNVAEK.R	2
*	PARC_3829_02282005-03.00851.00851.2	3.2626	0.2622	1430.13	1428.544	1	893.0	69.2%	1	R.VFTSWTGGGTSATR.L	2

ORFP:YPL153C

7.6%

821

91962

7.8

RAD53 SGDID:S0006074, Chr XVI from 264191-261726, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3829_02282005-06.01682.01682.2	4.3235	0.4812	1898.13	1897.135	1	1945.4	67.6%	1	K.DFSIIDEVVGQGAFATVK.K	2
*	PARC_3829_02282005-03.01446.01446.2	3.3734	0.3682	2705.01	2704.968	1	618.8	35.4%	1	K.MSPLGSQSYGDFSQISLSQSLSQQK.L	2
*	PARC_3829_02282005-03.01450.01450.3	3.761	0.3378	2705.09	2704.968	1	914.6	27.1%	1	K.MSPLGSQSYGDFSQISLSQSLSQQK.L	3
*	PARC_3829_02282005-03.00782.00782.2	5.8219	0.4079	2318.93	2319.462	1	1923.6	66.7%	2	R.KLQMEQQLQEQDQEDQDGK.I	2

NRL_1MCOH

7.5%

428

46852

8.9

owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3829_02282005-04.02120.02120.2	3.536	0.3835	1809.15	1809.119	1	1373.8	63.3%	1	R.VVSVLTVLHQNWLDGK.E	2
*	PARC_3829_02282005-03.00795.00795.2	3.1167	0.4439	1907.97	1906.161	2	278.8	46.7%	1	R.EPQVYTLPPSREEMTK.N	2

ORFP:YBR263W

6.7%

490

53686

8.7

SHM1 SGDID:S0000467, Chr II from 736219-737691

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3829_02282005-04.01209.01209.2	2.6559	0.2814	1574.83	1574.774	5	347.0	50.0%	2	K.HSITLIPSENFTSK.A	2
*	PARC_3829_02282005-06.01531.01531.2	3.6794	0.4283	2051.89	2052.356	1	815.9	55.6%	4	R.LMGLDLPDGGHLSHGYQLK.S	2

	Proteins	Peptide IDs	Copies
Unfiltered	3037	2620	5664
Redundant	7	28	73
Nonredundant	6	28	73

/data/1/aobailey/Antczak/3829_02282005/parc