D parc

DTASelect v1.9
/wfs/bfd/16/Aaron/November2004/Kellogg/control2_11152004/parc
/scratch/yates/EBI/yeastorf5.fasta
SEQUEST 2.7 in SQT format.

Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
1.8	Minimum +1 XCorr
2.5	Minimum +2 XCorr
3.5	Minimum +3 XCorr
0.08	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

ORFP:YOL039W

57.5%

106

10746

4.0

RPP2A SGDID:S0005399, Chr XV from 254295-254615

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02748.02748.2	2.6181	0.1222	1983.19	1981.256	1	594.6	41.7%	1	K.YLAAYLLLNAAGNTPDATK.I	2
*	PARC_control2_11152004-04.02332.02332.2	4.8959	0.4506	1545.21	1545.727	1	1891.6	84.6%	1	K.AILESVGIEIEDEK.V	2
*	PARC_control2_11152004-03.01211.01211.3	4.1817	0.5202	2381.75	2382.546	1	1875.7	33.3%	2	K.LAAVPAAGPASAGGAAAASGDAAAEEEK.E	3

ORFP:YDL229W

46.5%

613

66602

5.4

SSB1 SGDID:S0002388, Chr IV from 44066-45907

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01778.01778.2	2.8022	0.2065	1480.29	1480.66	2	979.4	66.7%	2	R.VTPSFVAFTPEER.L	2
*	PARC_control2_11152004-03.01795.01795.2	2.7314	0.2016	1281.33	1280.423	1	1098.1	70.0%	1	T.PSFVAFTPEER.L	2
	PARC_control2_11152004-02.00782.00782.1	1.8987	0.1588	794.3	794.883	4	261.7	66.7%	1	R.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control2_11152004-04.02622.02622.2	5.9587	0.4835	2160.71	2161.414	1	1737.3	75.0%	4	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_control2_11152004-04.02615.02615.3	6.0161	0.3424	2162.06	2161.414	1	2429.7	50.0%	1	K.VIDVDGNPVIEVQYLEETK.T	3 3
	PARC_control2_11152004-04.02619.02619.2	3.1186	0.2944	1950.45	1949.122	1	645.3	46.9%	1	I.DVDGNPVIEVQYLEETK.T	2 2
	PARC_control2_11152004-04.02620.02620.1	2.1459	0.0929	1251.5	1252.407	56	345.8	55.6%	1	V.IEVQYLEETK.T	1 1
	PARC_control2_11152004-04.02611.02611.2	3.9544	0.2948	1553.37	1552.826	1	1691.3	84.6%	1	K.TFSPQEISAMVLTK.M	2 2
	PARC_control2_11152004-04.02234.02234.2	2.6883	0.3722	1565.47	1565.769	12	191.3	46.2%	1	K.AVITVPAYFNDAQR.Q	2 2
	PARC_control2_11152004-03.01678.01678.2	3.8519	0.2832	1186.37	1186.354	1	1362.6	86.4%	1	K.DAGAISGLNVLR.I	2 2
	PARC_control2_11152004-04.02386.02386.3	4.8331	0.4505	1730.66	1731.002	1	1968.5	45.6%	1	R.IINEPTAAAIAYGLGAGK.S	3 3
	PARC_control2_11152004-04.02379.02379.2	5.374	0.5168	1732.21	1731.002	1	1654.3	73.5%	1	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_control2_11152004-04.02387.02387.1	2.8291	0.4674	1260.77	1261.464	1	860.2	61.5%	1	E.PTAAAIAYGLGAGK.S	1 1
	PARC_control2_11152004-02.00902.00902.2	3.6182	0.2877	1063.23	1063.109	1	1338.6	94.4%	1	K.TGLDISDDAR.A	2 2
	PARC_control2_11152004-04.03099.03099.3	3.7682	0.388	2964.56	2965.151	1	977.4	28.8%	1	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	3 3
	PARC_control2_11152004-04.02282.02282.1	1.9753	0.1457	1167.61	1168.335	2	552.6	61.1%	1	R.FEDLNAALFK.S	1 1
	PARC_control2_11152004-03.01882.01882.2	3.6448	0.3252	1168.05	1168.335	1	1007.0	88.9%	1	R.FEDLNAALFK.S	2 2
2	PARC_control2_11152004-03.01558.01558.2	2.9461	0.2936	1243.13	1243.443	1	579.3	80.0%	1	K.STLEPVEQVLK.D	2 2 2
	PARC_control2_11152004-03.01522.01522.2	5.3922	0.0824	1463.11	1460.627	1	2073.4	84.6%	4	K.SQIDEVVLVGGSTR.I	2 2
	PARC_control2_11152004-03.01518.01518.1	2.3111	0.1604	1131.63	1132.259	1	564.9	75.0%	1	I.DEVVLVGGSTR.I	1 1
	PARC_control2_11152004-04.02640.02640.3	5.1527	0.4696	2894.78	2895.106	1	1424.6	29.5%	1	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
	PARC_control2_11152004-03.01130.01130.2	5.6959	0.423	1834.11	1834.978	1	2204.5	72.2%	3	Y.GAAVQGAILTGQSTSDETK.D	2 2
	PARC_control2_11152004-04.02654.02654.1	1.9008	0.2226	1053.42	1054.056	4	338.4	50.0%	1	L.TGQSTSDETK.D	1 1
*	PARC_control2_11152004-04.02126.02126.2	4.9029	0.4908	2464.75	2464.617	1	967.2	52.5%	4	R.TFTTCADNQTTVQFPVYQGER.V	2
	PARC_control2_11152004-04.02519.02519.1	2.3784	0.2392	1278.75	1279.433	3	211.8	60.0%	1	K.ENTLLGEFDLK.N	1 1
	PARC_control2_11152004-04.02515.02515.2	2.8778	0.1559	1279.07	1279.433	2	573.8	75.0%	2	K.ENTLLGEFDLK.N	2 2
	PARC_control2_11152004-02.00952.00952.2	3.3845	0.3354	1218.75	1219.34	1	1688.8	81.8%	2	K.SSNITISNAVGR.L	2 2
	PARC_control2_11152004-04.02702.02702.2	6.08	0.513	2166.41	2167.418	1	1857.5	71.1%	2	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_control2_11152004-04.03047.03047.2	4.8923	0.4161	2411.49	2412.656	1	1328.3	45.5%	4	K.IEAALSDALAALQIEDPSADELR.K	2 2

Similarities: ORFP:YNL209W(26:3)
ORFP:YLL024C(1:28)
ORFP:YAL005C(1:28)
ORFP:YER103W(1:28)
ORFP:YBL075C(2:27)
GR78_HUMAN(1:28)

ORFP:YNL209W

44.4%

613

66595

5.5

SSB2 SGDID:S0005153, Chr XIV from 252058-253899

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-02.00782.00782.1	1.8987	0.1588	794.3	794.883	4	261.7	66.7%	1	R.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control2_11152004-04.02622.02622.2	5.9587	0.4835	2160.71	2161.414	1	1737.3	75.0%	4	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_control2_11152004-04.02615.02615.3	6.0161	0.3424	2162.06	2161.414	1	2429.7	50.0%	1	K.VIDVDGNPVIEVQYLEETK.T	3 3
	PARC_control2_11152004-04.02619.02619.2	3.1186	0.2944	1950.45	1949.122	1	645.3	46.9%	1	I.DVDGNPVIEVQYLEETK.T	2 2
	PARC_control2_11152004-04.02620.02620.1	2.1459	0.0929	1251.5	1252.407	56	345.8	55.6%	1	V.IEVQYLEETK.T	1 1
	PARC_control2_11152004-04.02611.02611.2	3.9544	0.2948	1553.37	1552.826	1	1691.3	84.6%	1	K.TFSPQEISAMVLTK.M	2 2
	PARC_control2_11152004-04.02234.02234.2	2.6883	0.3722	1565.47	1565.769	12	191.3	46.2%	1	K.AVITVPAYFNDAQR.Q	2 2
	PARC_control2_11152004-03.01678.01678.2	3.8519	0.2832	1186.37	1186.354	1	1362.6	86.4%	1	K.DAGAISGLNVLR.I	2 2
	PARC_control2_11152004-04.02386.02386.3	4.8331	0.4505	1730.66	1731.002	1	1968.5	45.6%	1	R.IINEPTAAAIAYGLGAGK.S	3 3
	PARC_control2_11152004-04.02379.02379.2	5.374	0.5168	1732.21	1731.002	1	1654.3	73.5%	1	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_control2_11152004-04.02387.02387.1	2.8291	0.4674	1260.77	1261.464	1	860.2	61.5%	1	E.PTAAAIAYGLGAGK.S	1 1
	PARC_control2_11152004-02.00902.00902.2	3.6182	0.2877	1063.23	1063.109	1	1338.6	94.4%	1	K.TGLDISDDAR.A	2 2
	PARC_control2_11152004-04.03099.03099.3	3.7682	0.388	2964.56	2965.151	1	977.4	28.8%	1	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	3 3
	PARC_control2_11152004-04.02282.02282.1	1.9753	0.1457	1167.61	1168.335	2	552.6	61.1%	1	R.FEDLNAALFK.S	1 1
	PARC_control2_11152004-03.01882.01882.2	3.6448	0.3252	1168.05	1168.335	1	1007.0	88.9%	1	R.FEDLNAALFK.S	2 2
2	PARC_control2_11152004-03.01558.01558.2	2.9461	0.2936	1243.13	1243.443	1	579.3	80.0%	1	K.STLEPVEQVLK.D	2 2 2
	PARC_control2_11152004-03.01522.01522.2	5.3922	0.0824	1463.11	1460.627	1	2073.4	84.6%	4	K.SQIDEVVLVGGSTR.I	2 2
	PARC_control2_11152004-03.01518.01518.1	2.3111	0.1604	1131.63	1132.259	1	564.9	75.0%	1	I.DEVVLVGGSTR.I	1 1
	PARC_control2_11152004-04.02640.02640.3	5.1527	0.4696	2894.78	2895.106	1	1424.6	29.5%	1	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
	PARC_control2_11152004-03.01130.01130.2	5.6959	0.423	1834.11	1834.978	1	2204.5	72.2%	3	Y.GAAVQGAILTGQSTSDETK.D	2 2
	PARC_control2_11152004-04.02654.02654.1	1.9008	0.2226	1053.42	1054.056	4	338.4	50.0%	1	L.TGQSTSDETK.D	1 1
*	PARC_control2_11152004-04.02198.02198.2	5.312	0.5032	2418.75	2419.61	1	1204.1	52.5%	2	R.TFTTVSDNQTTVQFPVYQGER.V	2
	PARC_control2_11152004-04.02519.02519.1	2.3784	0.2392	1278.75	1279.433	3	211.8	60.0%	1	K.ENTLLGEFDLK.N	1 1
	PARC_control2_11152004-04.02515.02515.2	2.8778	0.1559	1279.07	1279.433	2	573.8	75.0%	2	K.ENTLLGEFDLK.N	2 2
	PARC_control2_11152004-02.00952.00952.2	3.3845	0.3354	1218.75	1219.34	1	1688.8	81.8%	2	K.SSNITISNAVGR.L	2 2
	PARC_control2_11152004-04.02702.02702.2	6.08	0.513	2166.41	2167.418	1	1857.5	71.1%	2	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_control2_11152004-04.03047.03047.2	4.8923	0.4161	2411.49	2412.656	1	1328.3	45.5%	4	K.IEAALSDALAALQIEDPSADELR.K	2 2

Similarities: ORFP:YDL229W(26:1)
ORFP:YLL024C(1:26)
ORFP:YAL005C(1:26)
ORFP:YER103W(1:26)
ORFP:YBL075C(2:25)
GR78_HUMAN(1:26)

ORFP:YDR382W

43.6%

110

11050

4.1

RPP2B SGDID:S0002790, Chr IV from 1239480-1239812

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02872.02872.2	3.743	0.3943	2221.19	2220.574	1	789.9	47.6%	1	K.YLAAYLLLVQGGNAAPSAADIK.A	2
*	PARC_control2_11152004-03.01195.01195.2	4.535	0.4352	1430.83	1431.543	1	1507.3	80.8%	3	K.AVVESVGAEVDEAR.I	2
*	PARC_control2_11152004-03.01655.01655.2	3.4592	0.2455	1273.49	1274.414	1	1545.4	72.7%	1	K.GSLEEIIAEGQK.K	2

KERATIN03

40.1%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02046.02046.2	4.5743	0.5463	1709.67	1708.784	1	1039.3	55.6%	2	K.GSLGGGFSSGGFSGGSFSR.G	2
*	PARC_control2_11152004-02.00950.00950.2	4.507	0.4099	1381.73	1382.467	1	1845.4	81.8%	5	R.ALEESNYELEGK.I	2
*	PARC_control2_11152004-04.05506.05506.3	5.9754	0.3446	2368.46	2368.652	1	3066.3	46.2%	3	K.NQILNLTTDNANILLQIDNAR.L	3
*	PARC_control2_11152004-04.05460.05460.2	6.3198	0.4487	2369.73	2368.652	1	2143.6	62.5%	6	K.NQILNLTTDNANILLQIDNAR.L	2
*	PARC_control2_11152004-04.01488.01488.2	3.0465	0.2612	1236.27	1235.426	1	787.6	83.3%	2	R.LKYENEVALR.Q	2
	PARC_control2_11152004-02.01207.01207.2	2.5597	0.2511	1202.27	1202.31	5	347.6	70.0%	1	R.QSVEADINGLR.R	2 2
*	PARC_control2_11152004-02.01302.01302.2	3.2134	0.2546	1032.05	1032.222	1	719.3	93.8%	3	R.VLDELTLTK.A	2
*	PARC_control2_11152004-02.01278.01278.1	1.9432	0.0993	1032.58	1032.222	12	515.1	62.5%	2	R.VLDELTLTK.A	1
*	PARC_control2_11152004-04.03039.03039.3	4.7685	0.3695	2874.26	2874.213	1	915.9	26.9%	2	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	3
*	PARC_control2_11152004-02.00858.00858.2	4.2499	0.3934	1366.11	1366.43	1	1607.0	80.0%	4	R.SQYEQLAEQNR.K	2
*	PARC_control2_11152004-02.01310.01310.2	2.9618	0.1482	1110.11	1110.168	1	1043.4	81.2%	4	K.DAEAWFNEK.S	2
*	PARC_control2_11152004-02.01312.01312.1	2.3965	0.2096	1110.35	1110.168	12	491.8	56.2%	2	K.DAEAWFNEK.S	1
*	PARC_control2_11152004-04.02418.02418.2	5.9417	0.4875	1998.77	1998.151	1	1734.7	71.9%	3	K.ELTTEIDNNIEQISSYK.S	2
*	PARC_control2_11152004-04.05535.05535.2	2.6047	0.2799	1797.73	1798.09	1	821.7	56.7%	1	R.NVQALEIELQSQLALK.Q	2
*	PARC_control2_11152004-02.01210.01210.2	4.0419	0.4627	1391.07	1391.478	1	1516.7	83.3%	6	K.QSLEASLAETEGR.Y	2
*	PARC_control2_11152004-04.05499.05499.2	4.2033	0.4899	2746.57	2748.075	1	1205.4	47.7%	1	R.YCVQLSQIQAQISALEEQLQQIR.A	2
*	PARC_control2_11152004-01.03142.03142.2	4.0831	0.3786	2085.81	2084.337	1	954.3	58.8%	1	L.SQIQAQISALEEQLQQIR.A	2
*	PARC_control2_11152004-03.01802.01802.2	4.7562	0.4669	2083.07	2084.21	1	1770.8	65.6%	4	R.AETECQNTEYQQLLDIK.I	2
*	PARC_control2_11152004-02.00926.00926.2	3.9563	0.2893	1165.97	1166.276	1	1464.4	93.8%	3	R.LENEIQTYR.S	2
*	PARC_control2_11152004-02.00839.00839.2	3.6645	0.4009	1262.93	1263.307	1	1091.1	69.2%	2	R.SLLEGEGSSGGGGR.G	2

Similarities: KERATIN04(1:19)

gi|7463016|pir||S77957

35.3%

269

27961

6.7

lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-02.00894.00894.2	4.2701	0.3288	2261.99	2262.355	1	864.3	43.8%	5	R.APGSSSSGANGDGSLAQSQTGAVVR.A	2
*	PARC_control2_11152004-02.00986.00986.3	4.7201	0.2639	2262.2	2262.355	1	1144.1	34.4%	3	R.APGSSSSGANGDGSLAQSQTGAVVR.A	3
*	PARC_control2_11152004-01.02522.02522.2	5.4935	0.3347	2543.89	2543.792	1	1457.8	47.8%	6	R.ATNAASDFTLLELNTAANPAYNLF.W	2
*	PARC_control2_11152004-04.03542.03542.3	5.3701	0.4427	3314.69	3315.626	1	957.0	26.7%	1	R.ATNAASDFTLLELNTAANPAYNLFWAGWDR.R	3
*	PARC_control2_11152004-03.01302.01302.2	5.0705	0.4583	1428.15	1428.544	1	1574.6	84.6%	2	R.VFTSWTGGGTSATR.L	2
*	PARC_control2_11152004-01.02298.02298.2	5.2892	0.4804	2506.43	2506.685	1	1734.9	47.9%	4	R.LSDWLDAAGTGAQFIDGLDSTGTPP.V	2
*	PARC_control2_11152004-01.02406.02406.2	6.4743	0.5534	2606.13	2605.818	1	1539.4	52.0%	4	R.LSDWLDAAGTGAQFIDGLDSTGTPPV.-	2

U	ORFP:YDR418W	4	5	32.1%	165	17823	9.4	RPL12B SGDID:S0002826, Chr IV from 1301604-1302101
U	ORFP:YEL054C	4	5	32.1%	165	17823	9.4	RPL12A SGDID:S0000780, Chr V from 53218-52721, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-03.01118.01118.1	2.2153	0.2592	1297.63	1298.482	26	336.1	42.9%	1	R.AVGGEVGASAALAPK.I	1
PARC_control2_11152004-04.01478.01478.2	4.5072	0.4522	1298.07	1298.482	1	1833.8	82.1%	2	R.AVGGEVGASAALAPK.I	2
PARC_control2_11152004-04.02606.02606.2	3.3805	0.335	1813.63	1814.133	1	495.0	55.6%	1	R.QAAASVVPSASSLVITALK.E	2
PARC_control2_11152004-04.02467.02467.2	3.4285	0.2183	2076.01	2075.24	1	479.9	52.8%	1	K.NPHDIIEGINAGEIEIPEN.-	2

ORFP:YKR048C

30.0%

417

47885

4.3

NAP1 SGDID:S0001756, Chr XI from 526277-525024, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02867.02867.3	5.078	0.417	2594.66	2594.925	1	1515.3	35.2%	1	K.IGTINEEDILANQPLLLQSIQDR.L	3
*	PARC_control2_11152004-04.02034.02034.2	2.7297	0.3053	1649.19	1647.869	1	462.3	43.8%	1	R.LGSLVGQDSGYVGGLPK.N	2
*	PARC_control2_11152004-04.02591.02591.2	6.0754	0.433	2304.97	2304.467	1	2808.2	68.4%	1	K.GQEIVESLNETELLVDEEEK.A	2
*	PARC_control2_11152004-04.03692.03692.2	3.7274	0.4848	2312.33	2313.523	1	1218.9	57.9%	1	R.DAEVLEYLQDIGLEYLTDGR.P	2
*	PARC_control2_11152004-04.02607.02607.2	2.7135	0.2213	1875.33	1877.026	1	489.3	53.3%	1	R.FDSSANPFFTNDILCK.T	2
*	PARC_control2_11152004-02.01407.01407.2	2.8557	0.3184	2133.51	2134.128	1	880.2	56.2%	2	K.IQNEDQDEELEEDLEER.L	2
*	PARC_control2_11152004-04.02232.02232.2	3.3955	0.3233	1350.11	1350.555	1	1604.8	81.8%	1	R.LALDYSIGEQLK.D	2

KERATIN13

26.9%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02283.02283.1	2.2275	0.1166	1383.72	1384.532	4	434.1	54.5%	1	K.SLNNQFASFIDK.V	1
*	PARC_control2_11152004-04.02278.02278.2	3.8823	0.3921	1384.43	1384.532	1	1038.4	72.7%	1	K.SLNNQFASFIDK.V	2
	PARC_control2_11152004-02.01144.01144.2	4.3066	0.0959	1477.37	1476.673	1	1704.2	77.3%	1	R.FLEQQNQVLQTK.W	2 2
*	PARC_control2_11152004-04.02231.02231.2	4.35	0.4254	1476.19	1476.629	1	1890.6	81.8%	9	K.WELLQQVDTSTR.T	2
*	PARC_control2_11152004-02.01296.01296.2	2.7066	0.3719	1300.99	1301.432	1	959.1	77.8%	1	K.NMQDMVEDYR.N	2
*	PARC_control2_11152004-02.01134.01134.2	3.7808	0.2962	1266.07	1266.393	1	1498.5	85.0%	5	R.TNAENEFVTIK.K	2
*	PARC_control2_11152004-02.00762.00762.2	3.2841	0.3541	1126.73	1126.208	1	1308.6	83.3%	2	K.AEAESLYQSK.Y	2
*	PARC_control2_11152004-02.01114.01114.2	4.289	0.4162	1179.39	1180.303	1	2213.9	94.4%	7	K.YEELQITAGR.H	2
*	PARC_control2_11152004-03.01238.01238.1	2.9071	0.216	1181.67	1180.303	1	519.7	72.2%	3	K.YEELQITAGR.H	1
	PARC_control2_11152004-02.01090.01090.2	2.9589	0.0869	973.83	974.102	7	753.1	92.9%	1	K.IEISELNR.V	2 2
*	PARC_control2_11152004-03.01396.01396.2	3.8873	0.3792	1719.25	1717.833	1	1235.8	75.0%	3	K.QISNLQQSISDAEQR.G	2
*	PARC_control2_11152004-02.01422.01422.2	5.0215	0.1979	1359.27	1358.491	1	2181.5	86.4%	5	K.LNDLEDALQQAK.E	2
*	PARC_control2_11152004-02.01016.01016.2	3.0982	0.2319	1142.27	1142.269	1	1252.9	81.2%	2	R.DYQELMNTK.L	2
*2	PARC_control2_11152004-04.02472.02472.2	4.2352	0.2504	1278.29	1278.491	1	1978.6	90.0%	2	K.LALDLEIATYR.T	2
*	PARC_control2_11152004-02.00822.00822.2	2.7252	0.1645	1036.57	1034.111	14	489.8	68.8%	1	R.TLLEGEESR.M	2
*	PARC_control2_11152004-02.00778.00778.2	6.1668	0.2802	2385.09	2385.298	1	1047.5	40.0%	8	R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G	2
*	PARC_control2_11152004-03.00906.00906.3	6.8533	0.1986	2386.25	2385.298	1	2035.5	33.3%	4	R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G	3
*	PARC_control2_11152004-03.00906.00906.2	2.8013	0.3072	1591.17	1591.55	6	435.3	36.8%	1	S.SYGSGGGSYGSGGGGGGGRG.S	3

Similarities: KERATIN22(2:16)

ORFP:YLL024C

25.5%

639

69470

5.1

SSA2 SGDID:S0003947, Chr XII from 97484-95565, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01607.01607.2	2.659	0.4038	1255.83	1256.357	1	555.5	65.0%	1	T.PSFVGFTDTER.L	2
	PARC_control2_11152004-02.00782.00782.1	1.8987	0.1588	794.3	794.883	4	261.7	66.7%	1	A.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control2_11152004-04.02167.02167.2	3.3136	0.3899	1895.75	1896.067	1	383.8	50.0%	2	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
2	PARC_control2_11152004-03.01758.01758.2	3.1701	0.1156	1200.07	1200.381	1	1245.1	77.3%	1	K.DAGTIAGLNVLR.I	2 2 2 2 2
2	PARC_control2_11152004-03.01762.01762.1	1.996	0.1185	1200.79	1200.381	35	169.6	50.0%	1	K.DAGTIAGLNVLR.I	1 1 1 1 1
	PARC_control2_11152004-04.02270.02270.2	5.1878	0.4509	1660.67	1660.908	1	1474.8	80.0%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2
	PARC_control2_11152004-04.02407.02407.2	3.6932	0.31	1301.93	1300.42	1	1239.7	83.3%	1	R.FEELCADLFR.S	2 2 2 2
	PARC_control2_11152004-03.01542.01542.2	4.9279	0.1182	1459.93	1460.627	1	1656.7	80.8%	1	K.SQVDEIVLVGGSTR.I	2 2
	PARC_control2_11152004-04.02907.02907.2	6.0433	0.5941	2577.87	2578.792	1	2145.2	54.0%	2	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_control2_11152004-04.02916.02916.2	3.8067	0.3585	2264.23	2264.451	1	1029.4	45.5%	1	N.PDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_control2_11152004-04.02946.02946.2	5.8371	0.1828	2586.71	2586.817	1	995.3	50.0%	2	K.SEVFSTYADNQPGVLIQVFEGER.A	2 2
	PARC_control2_11152004-04.02160.02160.2	3.1932	0.194	1266.39	1266.437	1	1022.3	80.0%	1	K.NQLESIAYSLK.N	2 2
	PARC_control2_11152004-04.02158.02158.1	2.4196	0.0826	1266.7	1266.437	1	462.3	70.0%	1	K.NQLESIAYSLK.N	1 1
*	PARC_control2_11152004-03.01690.01690.2	2.7687	0.3807	1751.69	1751.888	1	733.4	50.0%	1	K.AEETIAWLDSNTTATK.E	2

Similarities: ORFP:YDL229W(1:13)
ORFP:YNL209W(1:13)
ORFP:YAL005C(11:3)
ORFP:YER103W(6:8)
ORFP:YBL075C(4:10)
GR78_YEAST(2:12)
GR78_HUMAN(2:12)
GR78_SCHPO(2:12)

KERATIN02

24.8%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.00870.00870.2	3.7786	0.4699	1233.09	1233.283	1	1445.0	76.7%	1	T.SGGGGGGGLGSGGSIR.S	2
*	PARC_control2_11152004-04.02312.02312.2	4.5747	0.5303	2705.73	2706.761	1	1107.0	37.1%	1	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_control2_11152004-04.02310.02310.3	4.4529	0.4805	2706.02	2706.761	1	901.8	26.6%	1	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	3
*	PARC_control2_11152004-04.02004.02004.2	4.0813	0.4801	2025.09	2024.07	1	901.7	45.7%	1	Y.SYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_control2_11152004-02.01006.01006.2	5.5997	0.4471	1587.41	1587.684	1	2484.0	84.6%	4	K.VQALEEANNDLENK.I	2
*	PARC_control2_11152004-03.01642.01642.2	2.864	0.2999	1606.25	1606.729	1	730.5	66.7%	1	K.NYSPYYNTIDDLK.D	2
*	PARC_control2_11152004-04.03326.03326.2	4.5213	0.4848	2538.43	2539.802	1	1074.1	45.2%	1	S.PYYNTIDDLKDQIVDLTVGNNK.T	2
*	PARC_control2_11152004-03.01348.01348.2	4.0675	0.4701	1316.07	1316.454	1	1835.3	81.8%	2	K.DQIVDLTVGNNK.T	2
*	PARC_control2_11152004-02.01270.01270.2	3.0697	0.0994	1060.75	1061.18	1	807.4	87.5%	3	K.TLLDIDNTR.M	2
*	PARC_control2_11152004-04.03070.03070.2	5.8872	0.4425	2171.71	2172.47	1	3312.5	76.5%	1	K.SDLEMQYETLQEELMALK.K	2
*	PARC_control2_11152004-04.02502.02502.2	5.6945	0.4711	2095.51	2096.308	1	1843.4	71.9%	4	R.QEIECQNQEYSLLLSIK.M	2
*	PARC_control2_11152004-02.00510.00510.2	3.2669	0.2815	1792.33	1792.732	1	638.9	40.9%	1	R.GGSGGSYGGGGSGGGYGGGSGSR.G	2

KERATIN22

22.6%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-02.00844.00844.2	3.5577	0.3549	1254.97	1255.33	1	1935.6	76.9%	2	R.GFSSGSAVVSGGSR.R	2
	PARC_control2_11152004-02.01144.01144.2	4.3066	0.0959	1477.37	1476.673	1	1704.2	77.3%	1	R.FLEQQNQVLQTK.W	2 2
*	PARC_control2_11152004-02.01138.01138.2	3.0499	0.3961	1037.49	1038.145	1	923.4	87.5%	2	R.YLDGLTAER.T	2
*	PARC_control2_11152004-02.01178.01178.2	2.6466	0.2208	1208.87	1209.342	3	681.0	70.0%	1	R.TAAENDFVTLK.K	2
*	PARC_control2_11152004-04.02726.02726.2	4.1572	0.3047	1460.63	1461.698	1	1247.2	81.8%	1	K.VDLLNQEIEFLK.V	2
	PARC_control2_11152004-04.02796.02796.1	3.2661	0.301	1329.81	1330.521	1	577.0	68.2%	1	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_control2_11152004-04.02791.02791.2	5.1718	0.3558	1329.83	1330.521	1	1843.1	90.9%	1	R.NLDLDSIIAEVK.A	2 2 2 2
*	PARC_control2_11152004-04.01626.01626.2	3.9275	0.3221	1194.11	1194.33	1	1930.0	88.9%	4	K.YEELQVTVGR.H	2
	PARC_control2_11152004-02.01090.01090.2	2.9589	0.0869	973.83	974.102	7	753.1	92.9%	1	K.IEISELNR.V	2 2
*	PARC_control2_11152004-02.01132.01132.2	3.9192	0.3779	1329.09	1330.397	1	1722.0	81.8%	2	K.NVQDAIADAEQR.G	2
*	PARC_control2_11152004-03.01664.01664.2	3.9293	0.095	1373.21	1372.518	1	1926.1	81.8%	1	K.LNDLEEALQQAK.E	2
	PARC_control2_11152004-04.02296.02296.2	2.9812	0.3428	1264.13	1264.464	1	1258.3	75.0%	1	K.LALDVEIATYR.K	2 2 2 2 2
*	PARC_control2_11152004-02.00651.00651.2	3.8241	0.5141	1743.39	1742.716	1	760.7	50.0%	4	R.GGSGGGGSISGGGYGSGGGSGGR.Y	2

Similarities: KERATIN13(2:11)
KERATIN21(3:10)
KERATIN17(3:10)
KERATIN18(3:10)
KERATIN15(1:12)

ORFP:YLR432W

20.1%

523

56585

7.4

IMD3 SGDID:S0004424, Chr XII from 1002552-1004123

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-04.02828.02828.2	3.654	0.2251	2097.13	2095.372	5	778.8	44.1%	1	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
PARC_control2_11152004-04.02170.02170.2	5.4211	0.5463	1942.79	1942.177	1	1761.1	63.9%	1	K.NPVTGAQGITLSEGNEILK.K	2 2 2
PARC_control2_11152004-04.02740.02740.2	4.723	0.5277	1758.67	1760.059	1	2392.3	73.3%	1	K.LLIVDDNGNLVSMLSR.T	2 2
PARC_control2_11152004-04.02700.02700.2	3.7789	0.1044	1746.21	1746.958	1	858.3	56.7%	1	K.ETFPDLEIIAGNVATR.E	2 2
PARC_control2_11152004-03.01618.01618.2	3.2604	0.3786	1469.89	1470.626	1	1398.7	67.9%	1	R.EQAANLIAAGADGLR.I	2 2 2 2
PARC_control2_11152004-04.02318.02318.2	5.3304	0.5107	2158.51	2158.37	1	1890.5	70.0%	1	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2

Similarities: ORFP:YML056C(4:2)
ORFP:YHR216W(4:2)
ORFP:YAR073W(3:3)

ORFP:YNL287W

19.0%

935

104831

5.1

SEC21 SGDID:S0005231, Chr XIV from 91992-94799

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02398.02398.2	4.4429	0.5599	1789.29	1789.937	1	1673.9	66.7%	1	R.SLTYVLDESTAFSAER.L	2
*	PARC_control2_11152004-03.01536.01536.2	4.7631	0.402	1508.87	1508.668	1	2406.8	87.5%	2	R.FTNETQEAVLDLK.Q	2
*	PARC_control2_11152004-04.05298.05298.2	3.2714	0.3235	2296.71	2297.743	1	996.4	47.6%	1	R.LVAPELYAAAISALQSLLTVPR.V	2
*	PARC_control2_11152004-04.03364.03364.2	3.1004	0.4444	1606.29	1606.857	1	772.0	61.5%	1	K.NDPTLYESIISLLK.R	2
*	PARC_control2_11152004-04.02450.02450.2	4.1039	0.3003	1306.87	1307.489	1	1626.7	81.8%	2	R.ATIALEFIDSAR.N	2
*	PARC_control2_11152004-04.02518.02518.2	6.3323	0.606	2422.57	2423.598	1	2318.7	59.5%	1	K.LSSYISSNTDSFATAFDVNQVR.K	2
*	PARC_control2_11152004-02.00908.00908.2	2.6096	0.3878	1834.37	1834.929	1	483.1	50.0%	1	K.SETTLDTTPEAESVPEK.R	2
*	PARC_control2_11152004-04.02331.02331.2	3.3678	0.3436	1561.35	1561.775	1	703.0	69.2%	1	R.AISLTEPEAEFVVR.G	2
*	PARC_control2_11152004-04.02246.02246.2	4.3349	0.4456	1597.49	1598.802	1	661.0	80.8%	1	R.LLPSEEAACYVAFK.K	2
*	PARC_control2_11152004-04.02251.02251.2	3.3524	0.4038	1373.25	1372.483	1	1181.3	72.7%	1	L.PSEEAACYVAFK.K	2
*	PARC_control2_11152004-04.03247.03247.3	5.2731	0.3576	3899.99	3898.052	1	1048.4	26.5%	1	K.EINPDTNEPFDGDEGFQDEYEIDSIFLNAGDYVK.S	3

ORFP:YAL005C

17.6%

642

69768

5.1

SSA1 SGDID:S0000004, Chr I from 141433-139505, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-02.00782.00782.1	1.8987	0.1588	794.3	794.883	4	261.7	66.7%	1	S.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control2_11152004-04.02167.02167.2	3.3136	0.3899	1895.75	1896.067	1	383.8	50.0%	2	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
2	PARC_control2_11152004-03.01758.01758.2	3.1701	0.1156	1200.07	1200.381	1	1245.1	77.3%	1	K.DAGTIAGLNVLR.I	2 2 2 2 2
2	PARC_control2_11152004-03.01762.01762.1	1.996	0.1185	1200.79	1200.381	35	169.6	50.0%	1	K.DAGTIAGLNVLR.I	1 1 1 1 1
	PARC_control2_11152004-04.02270.02270.2	5.1878	0.4509	1660.67	1660.908	1	1474.8	80.0%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2
	PARC_control2_11152004-04.02407.02407.2	3.6932	0.31	1301.93	1300.42	1	1239.7	83.3%	1	R.FEELCADLFR.S	2 2 2 2
	PARC_control2_11152004-03.01542.01542.2	4.9279	0.1182	1459.93	1460.627	1	1656.7	80.8%	1	K.SQVDEIVLVGGSTR.I	2 2
	PARC_control2_11152004-04.02907.02907.2	6.0433	0.5941	2577.87	2578.792	1	2145.2	54.0%	2	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_control2_11152004-04.02916.02916.2	3.8067	0.3585	2264.23	2264.451	1	1029.4	45.5%	1	N.PDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_control2_11152004-04.02160.02160.2	3.1932	0.194	1266.39	1266.437	1	1022.3	80.0%	1	K.NQLESIAYSLK.N	2 2
	PARC_control2_11152004-04.02158.02158.1	2.4196	0.0826	1266.7	1266.437	1	462.3	70.0%	1	K.NQLESIAYSLK.N	1 1

Similarities: ORFP:YDL229W(1:10)
ORFP:YNL209W(1:10)
ORFP:YLL024C(11:0)
ORFP:YER103W(5:6)
ORFP:YBL075C(4:7)
GR78_YEAST(2:9)
GR78_HUMAN(2:9)
GR78_SCHPO(2:9)

ORFP:YML056C

16.4%

524

56394

8.2

IMD4 SGDID:S0004520, Chr XIII from 164176-163717,163308-162194, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.03031.03031.2	4.3522	0.5477	2069.73	2069.331	1	1437.9	61.8%	1	R.DIQFLEDDSLVVSEVMTK.N	2
	PARC_control2_11152004-04.02740.02740.2	4.723	0.5277	1758.67	1760.059	1	2392.3	73.3%	1	K.LLIVDDNGNLVSMLSR.A	2 2
	PARC_control2_11152004-04.02700.02700.2	3.7789	0.1044	1746.21	1746.958	1	858.3	56.7%	1	K.ETFPDLEIIAGNVATR.E	2 2
	PARC_control2_11152004-03.01618.01618.2	3.2604	0.3786	1469.89	1470.626	1	1398.7	67.9%	1	R.EQAANLIAAGADGLR.I	2 2 2 2
	PARC_control2_11152004-04.02318.02318.2	5.3304	0.5107	2158.51	2158.37	1	1890.5	70.0%	1	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2

Similarities: ORFP:YLR432W(4:1)
ORFP:YHR216W(2:3)
ORFP:YAR073W(1:4)

SPA1_STAAU

16.2%

524

57320

5.7

owl|P02976| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-02.00875.00875.2	3.0854	0.2648	1558.57	1559.63	1	916.5	64.3%	1	K.DDPSQSANVLGEAQK.L	2 2
*	PARC_control2_11152004-04.02860.02860.3	4.7108	0.3388	2381.78	2382.61	1	2622.1	47.4%	1	K.DQQSAFYEILNMPNLNEAQR.N	3
*	PARC_control2_11152004-04.02855.02855.2	4.4466	0.4324	2383.53	2382.61	1	710.5	50.0%	1	K.DQQSAFYEILNMPNLNEAQR.N	2
	PARC_control2_11152004-02.00854.00854.2	3.394	0.4184	1461.09	1461.525	1	877.8	73.1%	1	K.DDPSQSTNVLGEAK.K	2 2
*	PARC_control2_11152004-02.01035.01035.2	3.1872	0.3332	1474.69	1475.552	1	1075.9	61.5%	1	K.DDPSQSANLLSEAK.K	2
	PARC_control2_11152004-04.02442.02442.2	2.7254	0.1698	2347.77	2347.587	29	339.2	33.3%	1	R.NGFIQSLKDDPSQSANLLAEAK.K	2 2
	PARC_control2_11152004-02.01071.01071.2	3.6149	0.4213	1460.27	1459.553	1	1001.8	69.2%	1	K.DDPSQSANLLAEAK.K	2 2

Similarities: SPA2_STAAU(4:3)

KERATIN05

15.9%

471

51531

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-03.01135.01135.1	3.0611	0.3341	1301.55	1302.424	1	850.4	59.1%	2	R.ALEEANADLEVK.I	1 1 1 1
	PARC_control2_11152004-03.01134.01134.2	4.3541	0.378	1302.13	1302.424	1	1978.2	86.4%	4	R.ALEEANADLEVK.I	2 2 2 2
*	PARC_control2_11152004-04.02524.02524.2	4.8274	0.3051	2055.07	2055.339	1	2192.3	63.9%	1	K.ILTATVDNANVLLQIDNAR.L	2
*	PARC_control2_11152004-03.01999.01999.1	2.1069	0.3133	1172.65	1173.267	2	449.6	62.5%	1	K.DAEEWFFTK.T	1
	PARC_control2_11152004-02.00751.00751.2	3.3418	0.3554	1362.75	1362.48	1	808.7	62.5%	1	R.EVATNSELVQSGK.S	2
*	PARC_control2_11152004-04.01715.01715.2	2.6594	0.2109	2310.43	2310.396	1	590.5	40.5%	1	R.LLEGEDAHLSSSQFSSGSQSSR.D	2

Similarities: KERATIN07(2:4)
KERATIN04(2:4)
KERATIN06(2:4)

ORFP:YGR192C

15.4%

332

35747

7.0

TDH3 SGDID:S0003424, Chr VII from 883812-882814, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02862.02862.2	4.1543	0.4515	2403.89	2404.638	1	1072.4	54.5%	1	R.DPANLPWGSSNVDIAIDSTGVFK.E	2
	PARC_control2_11152004-04.02368.02368.2	3.6279	0.3868	1471.43	1471.734	1	1167.5	69.2%	1	R.VPTVDVSVVDLTVK.L	2 2
	PARC_control2_11152004-04.02110.02110.2	3.3117	0.268	1753.55	1753.865	1	853.6	57.7%	1	K.LVSWYDNEYGYSTR.V	2 2

Similarities: ORFP:YJR009C(2:1)

U	ORFP:YNL301C	2	9	14.5%	186	20563	11.7	RPL18B SGDID:S0005245, Chr XIV from 64561-64450,64017-63569, reverse complement
U	ORFP:YOL120C	2	9	14.5%	186	20563	11.7	RPL18A SGDID:S0005480, Chr XV from 94401-94290,93842-93394, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-03.01202.01202.2	4.7169	0.4384	1333.03	1332.497	1	2034.3	87.5%	8	K.TVVVVGTVTDDAR.I	2
	PARC_control2_11152004-03.01695.01695.2	3.7214	0.1712	1503.31	1503.662	1	1231.7	69.2%	1	K.AGGECITLDQLAVR.A	2

ORFP:YHR216W

14.0%

523

56530

8.5

IMD2 SGDID:S0001259, Chr VIII from 554392-555963

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-04.02828.02828.2	3.654	0.2251	2097.13	2095.372	5	778.8	44.1%	1	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
PARC_control2_11152004-04.02170.02170.2	5.4211	0.5463	1942.79	1942.177	1	1761.1	63.9%	1	K.NPVTGAQGITLSEGNEILK.K	2 2 2
PARC_control2_11152004-03.01618.01618.2	3.2604	0.3786	1469.89	1470.626	1	1398.7	67.9%	1	R.EQAANLIAAGADGLR.I	2 2 2 2
PARC_control2_11152004-04.02318.02318.2	5.3304	0.5107	2158.51	2158.37	1	1890.5	70.0%	1	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2

Similarities: ORFP:YLR432W(4:0)
ORFP:YML056C(2:2)
ORFP:YAR073W(3:1)

KERATIN21

14.0%

357

39219

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-04.02796.02796.1	3.2661	0.301	1329.81	1330.521	1	577.0	68.2%	1	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_control2_11152004-04.02791.02791.2	5.1718	0.3558	1329.83	1330.521	1	1843.1	90.9%	1	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_control2_11152004-03.01090.01090.2	3.49	0.3895	1165.51	1166.276	1	1880.9	88.9%	1	K.YEELQVTAGR.H	2 2
	PARC_control2_11152004-04.02296.02296.2	2.9812	0.3428	1264.13	1264.464	1	1258.3	75.0%	1	K.LALDVEIATYR.K	2 2 2 2 2
*	PARC_control2_11152004-03.01210.01210.2	3.8732	0.4115	1448.41	1448.616	1	942.6	65.6%	2	R.AIGGGLSSVGGGSSTIK.Y	2

Similarities: KERATIN22(3:2)
KERATIN17(3:2)
KERATIN18(4:1)
KERATIN15(1:4)

U	ORFP:YBL072C	2	2	14.0%	200	22490	10.7	RPS8A SGDID:S0000168, Chr II from 89120-88518, reverse complement
U	ORFP:YER102W	2	2	14.0%	200	22490	10.7	RPS8B SGDID:S0000904, Chr V from 363096-363698

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-04.02130.02130.2	3.685	0.4897	1626.45	1626.763	1	1125.4	67.9%	1	R.IETGNFSWASEGISK.K	2
	PARC_control2_11152004-03.01146.01146.2	3.1428	0.4144	1396.49	1397.484	1	1273.8	75.0%	1	K.IESSVESQFSAGR.L	2

U	ORFP:YDL082W	2	2	13.1%	199	22554	11.2	RPL13A SGDID:S0002240, Chr IV from 308423-308426,308792-309387
U	ORFP:YMR142C	2	2	13.1%	199	22525	11.1	RPL13B SGDID:S0004750, Chr XIII from 551206-551203,550800-550205, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-04.02671.02671.2	3.1601	0.2777	2654.25	2654.937	6	273.8	26.0%	1	K.APEAEQVLSAAATFPIAQPATDVEAR.A	2
	PARC_control2_11152004-04.02667.02667.1	2.4324	0.3593	1267.69	1268.412	1	450.3	63.6%	1	F.PIAQPATDVEAR.A	1

ORFP:YAR073W

12.9%

403

44386

8.2

IMD1 SGDID:S0000095, Chr I from 227733-228944

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-04.02828.02828.2	3.654	0.2251	2097.13	2095.372	5	778.8	44.1%	1	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
PARC_control2_11152004-04.02170.02170.2	5.4211	0.5463	1942.79	1942.177	1	1761.1	63.9%	1	K.NPVTGAQGITLSEGNEILK.K	2 2 2
PARC_control2_11152004-03.01618.01618.2	3.2604	0.3786	1469.89	1470.626	1	1398.7	67.9%	1	K.EQAANLIAAGADGLR.I	2 2 2 2

Similarities: ORFP:YLR432W(3:0)
ORFP:YML056C(1:2)
ORFP:YHR216W(3:0)

ORFP:YOR229W

12.8%

467

51951

5.0

WTM2 SGDID:S0005755, Chr XV from 768409-769812

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-02.01320.01320.2	2.5844	0.3895	1997.39	1997.082	2	557.9	44.4%	1	K.SAATPNPEYGDAFQDVEGK.P	2
*	PARC_control2_11152004-03.01427.01427.2	4.7381	0.5464	1877.13	1878.076	1	1668.2	65.6%	2	K.MQYLESSDDSTAIAMSK.N	2
*	PARC_control2_11152004-04.05360.05360.2	3.5845	0.4192	2578.81	2578.879	2	403.3	28.3%	2	R.LTSFDSSQVTENLFVTGFSTGVIK.L	2

ORFP:YPR072W

12.7%

560

65855

5.3

NOT5 SGDID:S0006276, Chr XVI from 690102-691784

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.05471.05471.2	3.7099	0.3197	1873.71	1874.067	1	993.3	60.7%	1	R.DQVLFIHDCLDELQK.Q	2
*	PARC_control2_11152004-02.00838.00838.2	2.8294	0.2519	2024.73	2025.05	1	1311.1	63.3%	1	K.QLEQYEAQENEEQTER.H	2
*	PARC_control2_11152004-03.01851.01851.2	3.2824	0.2974	2290.81	2291.448	1	586.4	47.2%	1	K.LQNNEMDPEPVEEFQDDIK.Y	2
*	PARC_control2_11152004-04.02510.02510.2	4.6611	0.4836	2487.69	2486.654	1	403.3	45.0%	1	R.FVYPYDVPLNLTNNENDTDNK.F	2

ORFP:YFR037C

12.4%

557

63168

5.4

RSC8 SGDID:S0001933, Chr VI from 229173-227500, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.01315.01315.2	2.9059	0.3533	1342.09	1342.448	1	804.9	66.7%	1	K.EESATLGAEVAHK.K	2
*	PARC_control2_11152004-04.02570.02570.2	4.5425	0.4428	1525.73	1526.773	1	888.7	79.2%	1	R.LSPYEYLTITAVR.R	2
*	PARC_control2_11152004-04.02579.02579.2	2.9124	0.3334	1326.27	1326.535	1	1054.2	70.0%	1	S.PYEYLTITAVR.R	2
*	PARC_control2_11152004-03.01562.01562.2	5.8373	0.516	1972.13	1973.02	1	3133.0	81.2%	1	K.NVYDSAQDFNALQDESR.N	2
*	PARC_control2_11152004-04.02612.02612.2	3.1543	0.3444	1481.33	1480.704	1	560.6	72.7%	1	K.FLSLPIEDNYIR.E	2
*	PARC_control2_11152004-04.02610.02610.2	5.5761	0.4075	1664.25	1663.908	1	2328.6	88.5%	1	K.YIEESQAIIQELVK.L	2

U	ORFP:YBR031W	3	7	12.4%	362	39092	10.6	RPL4A SGDID:S0000235, Chr II from 300125-301213
U	ORFP:YDR012W	3	7	12.4%	362	39062	10.6	RPL4B SGDID:S0002419, Chr IV from 471849-472937

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-04.02882.02882.2	4.6065	0.4437	1881.85	1882.205	1	785.2	62.5%	1	K.IPEIPLVVSTDLESIQK.T	2
PARC_control2_11152004-04.02067.02067.2	4.5164	0.4621	1475.65	1474.697	1	1401.6	76.9%	4	R.GPLVVYAEDNGIVK.A	2
PARC_control2_11152004-03.01312.01312.2	4.1662	0.394	1506.57	1507.64	1	1290.8	76.9%	2	K.LDQVWGSETVASSK.V	2

ORFP:YMR116C

12.2%

319

34805

6.2

ASC1 SGDID:S0004722, Chr XIII from 500687-500151,499877-499455, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01482.01482.2	3.7392	0.422	1439.73	1439.568	1	1675.4	81.8%	1	R.LWDVATGETYQR.F	2
*	PARC_control2_11152004-02.00958.00958.2	3.6213	0.3419	1521.35	1521.578	1	1317.8	64.3%	1	K.ADDDSVTIISAGNDK.M	2
*	PARC_control2_11152004-04.02200.02200.1	2.9172	0.3373	1265.68	1266.483	1	584.2	59.1%	1	R.YWLAAATATGIK.V	1
*	PARC_control2_11152004-04.02207.02207.2	3.2155	0.2424	1265.91	1266.483	1	1513.4	77.3%	1	R.YWLAAATATGIK.V	2

ORFP:YHR174W

11.7%

437

46914

6.0

ENO2 SGDID:S0001217, Chr VIII from 451325-452638

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-04.03887.03887.3	4.3417	0.3404	3259.28	3259.551	1	841.8	23.4%	1	R.YGASAGNVGDEGGVAPNIQTAEEALDLIVDAIK.A	3
*	PARC_control2_11152004-04.02347.02347.2	4.5497	0.5075	1855.01	1856.086	1	2349.5	67.6%	1	K.TAGIQIVADDLTVTNPAR.I	2

ORFP:YJR123W

10.7%

225

25039

8.6

RPS5 SGDID:S0003884, Chr X from 651596-652273

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01694.01694.2	3.6842	0.3712	1265.03	1265.409	1	1410.8	80.0%	1	K.DASLVDYVQVR.Q	2
*	PARC_control2_11152004-04.02443.02443.2	3.6113	0.3389	1339.81	1340.609	1	2134.1	83.3%	1	R.VNQAIALLTIGAR.E	2

ORFP:YER103W

10.6%

642

69651

5.1

SSA4 SGDID:S0000905, Chr V from 364585-366513

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-02.00782.00782.1	1.8987	0.1588	794.3	794.883	4	261.7	66.7%	1	H.NTVFDAK.R	1 1 1 1 1 1 1
2	PARC_control2_11152004-03.01758.01758.2	3.1701	0.1156	1200.07	1200.381	1	1245.1	77.3%	1	K.DAGTIAGLNVLR.I	2 2 2 2 2
2	PARC_control2_11152004-03.01762.01762.1	1.996	0.1185	1200.79	1200.381	35	169.6	50.0%	1	K.DAGTIAGLNVLR.I	1 1 1 1 1
	PARC_control2_11152004-04.02270.02270.2	5.1878	0.4509	1660.67	1660.908	1	1474.8	80.0%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2
	PARC_control2_11152004-04.02407.02407.2	3.6932	0.31	1301.93	1300.42	1	1239.7	83.3%	1	R.FEELCADLFR.S	2 2 2 2
	PARC_control2_11152004-04.02946.02946.2	5.8371	0.1828	2586.71	2586.817	1	995.3	50.0%	2	K.SEVFSTYADNQPGVLIQVFEGER.T	2 2

Similarities: ORFP:YDL229W(1:5)
ORFP:YNL209W(1:5)
ORFP:YLL024C(6:0)
ORFP:YAL005C(5:1)
ORFP:YBL075C(3:3)
GR78_YEAST(2:4)
GR78_HUMAN(2:4)
GR78_SCHPO(2:4)

ORFP:YLR340W

10.6%

312

33717

4.8

RPP0 SGDID:S0004332, Chr XII from 805887-806825

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01067.01067.1	1.9408	0.1496	717.48	717.945	1	563.9	75.0%	1	R.AVVLMGK.N	1
*	PARC_control2_11152004-04.02554.02554.2	3.5056	0.3414	1765.79	1766.004	1	531.1	50.0%	1	K.GNVGFVFTNEPLTEIK.N	2
*	PARC_control2_11152004-03.01291.01291.1	2.0409	0.1938	1060.6	1061.221	49	453.1	50.0%	1	R.GTIEIVSDVK.V	1
*	PARC_control2_11152004-03.01290.01290.2	3.527	0.3577	1061.01	1061.221	1	1349.7	77.8%	1	R.GTIEIVSDVK.V	2

ORFP:YPL106C

10.4%

693

77367

5.2

SSE1 SGDID:S0006027, Chr XVI from 352270-350189, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.01998.01998.2	4.5859	0.4934	1315.03	1315.469	1	2394.9	81.8%	2	R.GIDIVVNEVSNR.S	2
*	PARC_control2_11152004-04.02352.02352.2	5.0941	0.3742	1653.99	1654.904	1	2760.1	80.0%	1	R.IVNDVTAAGVSYGIFK.T	2
*	PARC_control2_11152004-04.05482.05482.2	3.4544	0.3623	1798.91	1798.946	1	926.7	60.7%	1	R.DFDLAITEHFADEFK.T	2
*	PARC_control2_11152004-04.02806.02806.2	4.8814	0.448	1836.49	1837.037	1	1873.1	65.6%	1	K.LSAEEVDFVEIIGGTTR.I	2
	PARC_control2_11152004-04.02423.02423.2	3.7172	0.4794	1377.75	1378.568	1	1198.7	72.7%	1	K.YEELASLGNIIR.G	2

ORFP:YNL178W

10.4%

240

26503

9.4

RPS3 SGDID:S0005122, Chr XIV from 302677-303399

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01198.01198.2	4.2554	0.3828	1439.19	1438.534	1	1463.3	79.2%	2	R.ELAEEGYSGVEVR.V	2
*	PARC_control2_11152004-04.02066.02066.2	3.1804	0.371	1353.17	1353.561	1	563.8	72.7%	1	K.YAPGTIVLYAER.V	2

ORFP:YLR321C

10.3%

426

48777

5.2

SFH1 SGDID:S0004313, Chr XII from 777864-776584, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02959.02959.2	3.9222	0.3727	1977.49	1977.281	1	992.4	52.9%	1	K.DLDMTSATLQTQIANIIK.E	2
*	PARC_control2_11152004-04.02544.02544.2	3.1789	0.3066	1717.65	1717.835	1	1026.7	62.5%	1	R.FFEDNFQWNLNDK.S	2
*	PARC_control2_11152004-04.02560.02560.2	3.3267	0.323	1421.07	1421.637	1	874.1	66.7%	1	R.FATSIVQDLGLTR.E	2

SPA2_STAAU

10.0%

508

55439

5.7

owl|P38507| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-02.00875.00875.2	3.0854	0.2648	1558.57	1559.63	1	916.5	64.3%	1	K.DDPSQSANVLGEAQK.L	2 2
PARC_control2_11152004-02.00854.00854.2	3.394	0.4184	1461.09	1461.525	1	877.8	73.1%	1	K.DDPSQSTNVLGEAK.K	2 2
PARC_control2_11152004-04.02442.02442.2	2.7254	0.1698	2347.77	2347.587	29	339.2	33.3%	2	R.NGFIQSLKDDPSQSANLLAEAK.K	2 2
PARC_control2_11152004-02.01071.01071.2	3.6149	0.4213	1460.27	1459.553	1	1001.8	69.2%	2	K.DDPSQSANLLAEAK.K	2 2

Similarities: SPA1_STAAU(4:0)

ORFP:YOR204W

9.6%

604

65553

7.8

DED1 SGDID:S0005730, Chr XV from 722911-724725

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.03263.03263.2	3.1697	0.3461	2538.99	2538.898	1	365.2	40.9%	1	K.DVPEPITEFTSPPLDGLLLENIK.L	2
*	PARC_control2_11152004-04.02306.02306.2	3.7997	0.4318	1372.27	1372.608	1	1434.5	67.9%	1	R.SGAATLLVATAVAAR.G	2
*	PARC_control2_11152004-04.02403.02403.2	3.9079	0.4044	2057.73	2056.24	1	499.4	36.8%	1	R.AGNTGLATAFFNSENSNIVK.G	2

ORFP:YML127W

9.6%

581

65218

7.8

RSC9 SGDID:S0004596, Chr XIII from 17065-18810

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02048.02048.2	4.8796	0.3626	1544.37	1544.745	1	2065.3	80.8%	3	R.NLAQDTDSVQILVK.D	2
*	PARC_control2_11152004-04.02491.02491.2	4.5505	0.466	2116.73	2117.367	1	987.0	52.5%	1	K.NVSNAFNNAAAIVITDPVTGK.K	2
*	PARC_control2_11152004-01.02998.02998.2	4.7361	0.4762	2250.07	2249.581	1	927.7	55.0%	1	K.LADIPPLTLALSEYMENTSGL.-	2

ORFP:YGL016W

9.4%

1081

123531

5.0

KAP122 SGDID:S0002984, Chr VII from 461669-464914

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02154.02154.2	5.3673	0.5408	2130.59	2131.214	1	1732.6	67.6%	5	R.IIEEEGESTSVNEFEDFR.N	2
*	PARC_control2_11152004-04.03016.03016.2	3.6787	0.4302	1473.01	1473.709	1	1459.5	73.1%	1	R.TSTTLIGTLAGYFK.Q	2
*	PARC_control2_11152004-04.01694.01694.2	4.2985	0.4963	2093.43	2094.252	1	1029.4	55.6%	1	R.SIGYVVQCQVSNGPEEQAK.Y	2
*	PARC_control2_11152004-04.02978.02978.2	4.623	0.5125	1941.61	1941.15	1	1193.5	63.3%	1	R.LSEFQSFWSSDPLQIR.S	2
*	PARC_control2_11152004-04.02787.02787.2	4.3581	0.3156	1507.39	1507.736	1	1814.4	76.9%	2	K.NSAFVEIGCLIVGK.G	2
*	PARC_control2_11152004-01.02818.02818.2	3.9169	0.2697	2421.35	2421.681	2	261.6	37.5%	2	R.AAGNVILQWWLDCTTLPNYQG.-	2

ORFP:YBL075C

9.4%

649

70547

5.2

SSA3 SGDID:S0000171, Chr II from 86443-84494, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-02.00782.00782.1	1.8987	0.1588	794.3	794.883	4	261.7	66.7%	1	H.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control2_11152004-04.02167.02167.2	3.3136	0.3899	1895.75	1896.067	1	383.8	50.0%	2	T.VNDAVVTVPAYFNDSQR.Q	2 2 2
	PARC_control2_11152004-04.02270.02270.2	5.1878	0.4509	1660.67	1660.908	1	1474.8	80.0%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2
	PARC_control2_11152004-04.02407.02407.2	3.6932	0.31	1301.93	1300.42	1	1239.7	83.3%	1	R.FEELCADLFR.S	2 2 2 2
*2	PARC_control2_11152004-03.01558.01558.2	2.9461	0.2936	1243.13	1243.486	1	579.3	80.0%	1	R.STLEPVEKVLK.D	2 2 2

Similarities: ORFP:YDL229W(2:3)
ORFP:YNL209W(2:3)
ORFP:YLL024C(4:1)
ORFP:YAL005C(4:1)
ORFP:YER103W(3:2)
GR78_HUMAN(2:3)

ORFP:YJR009C

8.4%

332

35847

7.0

TDH2 SGDID:S0003769, Chr X from 454374-453376, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-04.02368.02368.2	3.6279	0.3868	1471.43	1471.734	1	1167.5	69.2%	1	R.VPTVDVSVVDLTVK.L	2 2
	PARC_control2_11152004-04.02110.02110.2	3.3117	0.268	1753.55	1753.865	1	853.6	57.7%	1	K.LVSWYDNEYGYSTR.V	2 2

Similarities: ORFP:YGR192C(2:0)

KERATIN17

8.1%

590

62461

8.1

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01220.01220.2	4.0334	0.4939	1411.79	1411.524	1	1295.8	64.3%	1	R.VSLAGACGVGGYGSR.S	2
	PARC_control2_11152004-04.02796.02796.1	3.2661	0.301	1329.81	1330.521	1	577.0	68.2%	1	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_control2_11152004-04.02791.02791.2	5.1718	0.3558	1329.83	1330.521	1	1843.1	90.9%	1	R.NLDLDSIIAEVK.A	2 2 2 2
*	PARC_control2_11152004-02.00719.00719.2	2.6146	0.3042	1194.89	1195.274	1	1101.1	72.2%	1	K.YEELQQTAGR.H	2
	PARC_control2_11152004-04.02296.02296.2	2.9812	0.3428	1264.13	1264.464	1	1258.3	75.0%	1	K.LALDVEIATYR.K	2 2 2 2 2

Similarities: KERATIN22(3:2)
KERATIN21(3:2)
KERATIN18(3:2)
KERATIN15(1:4)

ORFP:YGR159C

7.7%

414

44535

4.9

NSR1 SGDID:S0003391, Chr VII from 807658-806414, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02802.02802.2	4.5705	0.3492	2502.03	2501.668	1	572.9	45.5%	1	K.FGDTPSEPSDTLFLGNLSFNADR.D	2
*	PARC_control2_11152004-04.02703.02703.1	2.5937	0.3016	1053.51	1054.231	1	863.8	75.0%	1	R.DAIFELFAK.H	1

KERATIN07

6.6%

473

50915

5.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-03.01135.01135.1	3.0611	0.3341	1301.55	1302.424	1	850.4	59.1%	2	R.ALEEANADLEVK.I	1 1 1 1
	PARC_control2_11152004-03.01134.01134.2	4.3541	0.378	1302.13	1302.424	1	1978.2	86.4%	4	R.ALEEANADLEVK.I	2 2 2 2
*	PARC_control2_11152004-04.02390.02390.2	5.3018	0.5295	2064.79	2065.378	1	1083.8	63.9%	1	K.IIAATIENAQPILQIDNAR.L	2

Similarities: KERATIN05(2:1)
KERATIN04(2:1)
KERATIN06(2:1)

ORFP:YPL093W

5.9%

647

74410

8.8

NOG1 SGDID:S0006014, Chr XVI from 370973-372916

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02176.02176.2	2.7424	0.3081	1748.13	1747.902	1	886.0	56.2%	1	R.DIEAENGGAGVFNVNLK.D	2
*	PARC_control2_11152004-03.01587.01587.2	3.8142	0.2607	2112.33	2111.227	1	1605.0	55.0%	1	R.GSDVVFGDQDALTASTENGVK.L	2

KERATIN18

5.9%

562

59822

8.0

no description

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-04.02796.02796.1	3.2661	0.301	1329.81	1330.521	1	577.0	68.2%	1	R.NLDLDSIIAEVK.A	1 1 1 1
PARC_control2_11152004-04.02791.02791.2	5.1718	0.3558	1329.83	1330.521	1	1843.1	90.9%	1	R.NLDLDSIIAEVK.A	2 2 2 2
PARC_control2_11152004-03.01090.01090.2	3.49	0.3895	1165.51	1166.276	1	1880.9	88.9%	1	K.YEELQVTAGR.H	2 2
PARC_control2_11152004-04.02296.02296.2	2.9812	0.3428	1264.13	1264.464	1	1258.3	75.0%	1	K.LALDVEIATYR.K	2 2 2 2 2

Similarities: KERATIN22(3:1)
KERATIN21(4:0)
KERATIN17(3:1)
KERATIN15(1:3)

ORFP:YMR033W

5.6%

467

53074

5.1

ARP9 SGDID:S0004636, Chr XIII from 337787-337816,337903-339276

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02514.02514.2	4.0323	0.3955	1644.95	1645.722	1	1168.8	70.8%	1	K.NSDLEFNTFWDEK.G	2
*	PARC_control2_11152004-03.01782.01782.2	3.0496	0.2592	1430.19	1430.598	1	646.6	58.3%	1	R.VGLTLDNIDDINK.A	2

ORFP:YDR432W

5.3%

414

45407

5.5

NPL3 SGDID:S0002840, Chr IV from 1328771-1330015

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.03374.03374.3	3.7688	0.4195	2438.3	2438.65	1	1026.8	33.3%	1	R.DFDGTGALEFPSEEILVEALER.L	3
*	PARC_control2_11152004-04.03370.03370.2	5.0037	0.4234	2440.05	2438.65	1	608.8	47.6%	2	R.DFDGTGALEFPSEEILVEALER.L	2

KERATIN04

5.0%

458

49644

4.9

no description

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control2_11152004-03.01135.01135.1	3.0611	0.3341	1301.55	1302.424	1	850.4	59.1%	2	R.ALEEANADLEVK.I	1 1 1 1
PARC_control2_11152004-03.01134.01134.2	4.3541	0.378	1302.13	1302.424	1	1978.2	86.4%	4	R.ALEEANADLEVK.I	2 2 2 2
PARC_control2_11152004-02.01207.01207.2	2.5597	0.2511	1202.27	1202.31	5	347.6	70.0%	1	R.QSVEADINGLR.R	2 2

Similarities: KERATIN03(1:2)
KERATIN05(2:1)
KERATIN07(2:1)
KERATIN06(2:1)

ORFP:YHR181W

4.8%

228

26284

8.4

SVP26 SGDID:S0001224, Chr VIII from 467224-467910

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	PARC_control2_11152004-03.01867.01867.2	2.5537	0.1411	1149.97	1150.618	1	1031.1	83.3%	1	G.IILILILLLL.L	2
*2	PARC_control2_11152004-03.01867.01867.2	2.5537	0.1411	1149.97	1150.618	1	1031.1	83.3%	1	I.ILILILLLLL.D	2

U	GR78_YEAST	3	3	4.4%	682	74468	4.9	owl\|P16474\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	ORFP:YJL034W	3	3	4.4%	682	74468	4.9	KAR2 SGDID:S0003571, Chr X from 381023-383071

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_control2_11152004-03.01758.01758.2	3.1701	0.1156	1200.07	1200.381	1	1245.1	77.3%	1	K.DAGTIAGLNVLR.I	2 2 2 2 2
2	PARC_control2_11152004-03.01762.01762.1	1.996	0.1185	1200.79	1200.381	35	169.6	50.0%	1	K.DAGTIAGLNVLR.I	1 1 1 1 1
	PARC_control2_11152004-04.02983.02983.2	3.397	0.3501	2025.03	2024.232	1	1022.8	50.0%	1	R.IEIDSFVDGIDLSETLTR.A	2

Similarities: ORFP:YLL024C(2:1)
ORFP:YAL005C(2:1)
ORFP:YER103W(2:1)
GR78_SCHPO(2:1)

INT-STD1

4.3%

607

69271

6.1

BSA

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02879.02879.2	4.6165	0.4142	1568.41	1568.726	1	1967.0	79.2%	1	K.DAFLGSFLYEYSR.R	2
*	PARC_control2_11152004-04.02363.02363.2	4.4806	0.395	1480.93	1480.707	1	1800.6	79.2%	1	K.LGEYGFQNALIVR.Y	2

KERATIN15

3.8%

629

64511

6.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-04.02794.02794.1	3.2739	0.3171	1302.76	1303.452	21	642.2	50.0%	2	R.SLDLDSIIAEVGA.Q	1
*	PARC_control2_11152004-04.02790.02790.2	4.8031	0.2865	1303.21	1303.452	1	1871.7	79.2%	2	R.SLDLDSIIAEVGA.Q	2
	PARC_control2_11152004-04.02296.02296.2	2.9812	0.3428	1264.13	1264.464	1	1258.3	75.0%	1	K.LALDVEIATYR.K	2 2 2 2 2

Similarities: KERATIN22(1:2)
KERATIN21(1:2)
KERATIN17(1:2)
KERATIN18(1:2)

U	GR78_HUMAN	2	2	3.5%	653	72116	5.1	owl\|P11021\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_RAT	2	2	3.5%	654	72347	5.2	owl\|P06761\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_MOUSE	2	2	3.5%	655	72421	5.2	owl\|P20029\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_MESAU	2	2	3.5%	654	72379	5.2	owl\|P07823\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-02.00782.00782.1	1.8987	0.1588	794.3	794.883	4	261.7	66.7%	1	E.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control2_11152004-04.02270.02270.2	5.1878	0.4509	1660.67	1660.908	1	1474.8	80.0%	1	R.IINEPTAAAIAYGLDK.R	2 2 2 2 2

Similarities: ORFP:YDL229W(1:1)
ORFP:YNL209W(1:1)
ORFP:YLL024C(2:0)
ORFP:YAL005C(2:0)
ORFP:YER103W(2:0)
ORFP:YBL075C(2:0)

U	KERATIN06	2	6	2.6%	456	49168	4.8	no description
U	KERATIN08	2	6	2.6%	469	50499	5.0	no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control2_11152004-03.01135.01135.1	3.0611	0.3341	1301.55	1302.424	1	850.4	59.1%	2	R.ALEEANADLEVK.I	1 1 1 1
	PARC_control2_11152004-03.01134.01134.2	4.3541	0.378	1302.13	1302.424	1	1978.2	86.4%	4	R.ALEEANADLEVK.I	2 2 2 2

Similarities: KERATIN05(2:0)
KERATIN07(2:0)
KERATIN04(2:0)

ORFP:YIL126W

2.1%

1359

156742

6.7

STH1 SGDID:S0001388, Chr IX from 117992-122071

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control2_11152004-03.01120.01120.2	4.6953	0.4537	1599.33	1599.648	1	2161.8	80.8%	3	K.NDNTTAIEVDYSEK.K	2
*	PARC_control2_11152004-04.02562.02562.2	3.5919	0.3397	1617.17	1617.837	1	1505.1	69.2%	1	R.LITTDSVEEVILER.A	2

GR78_SCHPO

1.8%

663

73081

4.9

owl|P36604| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	PARC_control2_11152004-03.01758.01758.2	3.1701	0.1156	1200.07	1200.381	1	1245.1	77.3%	1	K.DAGTIAGLNVIR.I	2 2 2 2 2
*2	PARC_control2_11152004-03.01762.01762.1	1.996	0.1185	1200.79	1200.381	35	169.6	50.0%	1	K.DAGTIAGLNVIR.I	1 1 1 1 1

Similarities: ORFP:YLL024C(2:0)
ORFP:YAL005C(2:0)
ORFP:YER103W(2:0)
GR78_YEAST(2:0)

	Proteins	Peptide IDs	Copies
Unfiltered	4977	9887	22298
Redundant	69	332	538
Nonredundant	59	239	415

/wfs/bfd/16/Aaron/November2004/Kellogg/control2_11152004/parc