D splitted

596

64269

4.8

MKC7 SGDID:S000002551, Chr IV from 746096-744306, reverse complement, Verified ORF, "GPI-anchored aspartyl protease (yapsin) involved in protein processing; shares functions with Yap3p and Kex2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_33.12265.12265.3	3.2862	0.0877	97.7%	3767.258	3770.927	28	3.082	17.9%	1	K.GQKTQTSTTALSISKSTSSTSSTGMLSPTSSSSTRK.E	3

Reverse_YPR033C

546

59953

7.7

HTS1 SGDID:S000006237, Chr XVI from 639016-637376, reverse complement, Verified ORF, "Cytoplasmic and mitochondrial histidine tRNA synthetase; encoded by a single nuclear gene that specifies two messages; efficient mitochondrial localization requires both a presequence and an amino-terminal sequence "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_56.19893.19893.3	2.9525	0.1004	96.3%	3348.2573	3352.6555	42	3.267	19.5%	1	K.LANAANATPASTAAATASSMRIISSSKISTVVK.N	3

Reverse_YIL022W

431

48854

9.4

TIM44 SGDID:S000001284, Chr IX from 311163-312458, Verified ORF, "Peripheral mitochondrial membrane protein involved in mitochondrial protein import, tethers essential chaperone Ssc1p to the translocon channel at the matrix side of the inner membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_28.10611.10611.2	2.085	0.092	96.7%	3163.2122	3160.2952	24	3.256	24.0%	1	K.LRRQEKTIFGGYRSSEGDDIVESVEK.Y	2

YMR130W

302

35278

6.2

YMR130W SGDID:S000004737, Chr XIII from 532118-533026, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_57.20205.20205.2	2.0547	0.0437	91.1%	2027.2805	2029.3434	157	3.044	32.4%	1	R.HPDVILGIVSNTDPIFYK.L	2

YDL113C

5.9%

640

72546

7.0

ATG20 SGDID:S000002271, Chr IV from 258555-256633, reverse complement, Verified ORF, "Protein required for transport of aminopeptidase I (Lap4p) through the cytoplasm-to-vacuole targeting pathway; binds phosphatidylinositol-3-phosphate, involved in localization of membranes to the preautophagosome, potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_53.18901.18901.4	3.9748	0.0484	91.4%	4234.0967	4234.5156	286	3.233	17.1%	1	R.TSLSGSINSMNGETSASEEPSVSNRKKSARIHILEAKR.V	4

YDL154W

5.8%

901

102209

5.3

MSH5 SGDID:S000002313, Chr IV from 178335-181040, Verified ORF, "Protein of the MutS family, forms a dimer with Msh4p that facilitates crossovers between homologs during meiosis; msh5-Y823H mutation confers tolerance to DNA alkylating agents; homologs present in C. elegans and humans"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_5.02370.02370.4	3.778	0.0651	91.7%	5786.1587	5785.4814	54	2.942	14.1%	1	K.TQSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSK.S	4

YLR263W

5.8%

827

95538

7.2

RED1 SGDID:S000004253, Chr XII from 670342-672825, Verified ORF, "Protein component of the axial elements of the synaptonemal complex, involved in chromosome segregation during the first meiotic division; interacts with Hop1p; required for wild-type levels of Mek1p kinase activity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_64.22324.22324.4	4.1025	0.131	98.1%	5506.2686	5503.074	88	3.591	14.5%	1	R.FSSEINIDEDSKVLNYLLETGIAMENPVSWKCLAVISSILSSVPQSKK.I	4

YIL046W

5.8%

640

72835

7.7

MET30 SGDID:S000001308, Chr IX from 268650-270572, Verified ORF, "F-box protein containing five copies of the WD40 motif, controls cell cycle function, sulfur metabolism, and methionine biosynthesis as part of the ubiquitin ligase complex; interacts with and regulates Met4p, localizes within the nucleus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_57.20017.20017.4	4.0366	0.1826	98.8%	4304.1196	4308.664	95	3.785	17.1%	1	K.MTMATRS*PSSSPDLATNDSGTRVQPLPEYNFTKFCYR.H	4

YNL126W

5.7%

846

98227

7.5

SPC98 SGDID:S000005070, Chr XIV from 387229-389769, Verified ORF, "Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_63.22163.22163.3	3.5498	0.1534	100.0%	4027.725	4024.7083	2	4.27	19.3%	1	-.MELEPTLFGIIEALAPQLLSQSHLQTFVSDVVNLLR.S	3
*	Jamie_Mit_09102008_7.02937.02937.2	2.8452	0.1424	100.0%	1344.4722	1343.5663	1	4.597	68.2%	1	R.VLQEAVQLSSLR.H	2

Reverse_YJL128C

5.7%

668

72720

9.0

PBS2 SGDID:S000003664, Chr X from 180021-178015, reverse complement, Verified ORF, "MAP kinase kinase that plays a pivotal role in the osmosensing signal-transduction pathway, activated under severe osmotic stress"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_55.19493.19493.4	3.5841	0.0653	90.2%	4222.882	4225.7446	268	2.318	16.7%	1	K.NSPSPAFQQPQQATKTPMKLSMGGPPLKVARRASLSQK.P	4

YGR177C

5.6%

535

61898

5.9

ATF2 SGDID:S000003409, Chr VII from 850441-848834, reverse complement, Verified ORF, "Alcohol acetyltransferase, may play a role in steroid detoxification; forms volatile esters during fermentation, which is important in brewing"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_57.20193.20193.4	3.0412	0.1272	91.7%	3838.8164	3844.1733	286	2.97	19.5%	1	K.VISHLEFDDLIMNNQPEYREVMEKISEQFK.K	4

YJR083C

5.5%

309

35521

8.6

ACF4 SGDID:S000003843, Chr X from 583451-582522, reverse complement, Uncharacterized ORF, "Protein of unknown function, computational analysis of large-scale protein-protein interaction data suggests a possible role in actin cytoskeleton organization; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_77.26830.26830.2	2.3883	0.163	100.0%	2021.6494	2019.3458	18	3.986	40.6%	1	R.EINELSFKLEVAQKELK.Q	2

Reverse_YBR060C

620

71238

9.4

ORC2 SGDID:S000000264, Chr II from 362512-360650, reverse complement, Verified ORF, "Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_59.20731.20731.3	3.8693	0.0408	97.3%	4125.137	4126.765	40	3.218	18.0%	1	R.KSGVGY*FLLSFGQTLEFWYQPFMKKQIEFLKQR.P	3

Reverse_YLR353W

603

66289

6.3

BUD8 SGDID:S000004345, Chr XII from 834351-836162, Verified ORF, "Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the proximal pole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_31.11524.11524.3	3.3901	0.1042	98.4%	3411.9143	3412.6523	105	3.4	21.0%	1	K.IKRASTGPAGPSHSDDSTSSKISGAKEPIKLK.H	3

YHR005C

472

54076

7.6

GPA1 SGDID:S000001047, Chr VIII from 114912-113494, reverse complement, Verified ORF, "GTP-binding alpha subunit of the heterotrimeric G protein that couples to pheromone receptors; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates the pathway via Scp160p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_68.23767.23767.2	1.8667	0.2226	100.0%	2766.672	2764.1924	2	4.335	27.1%	1	R.DKNEIKLLLLGAGES*GKSTVLKQLK.L	2

Reverse_YDL090C

431

48190

6.4

RAM1 SGDID:S000002248, Chr IV from 296329-295034, reverse complement, Verified ORF, "Beta subunit of the CAAX farnesyltransferase (FTase) that prenylates the a-factor mating pheromone and Ras proteins; required for the membrane localization of Ras proteins and a-factor; homolog of the mammalian FTase beta subunit"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_59.20782.20782.2	2.0942	0.1252	98.1%	2888.5322	2890.2253	1	3.426	27.3%	1	K.FYHIIKRVNEIPLGYVPNVDTLK.S	2

U	YGR254W	1	1	5.3%	437	46816	6.6	ENO1 SGDID:S000003486, Chr VII from 1000932-1002245, Verified ORF, "Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose"
U	YHR174W	1	1	5.3%	437	46914	6.0	ENO2 SGDID:S000001217, Chr VIII from 451327-452640, Verified ORF, "Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_Mit_09102008_36.13151.13151.3	3.5122	0.0844	98.4%	2830.6855	2830.0815	24	4.335	28.4%	1	R.YPIVSIEDPFAEDDWEAWSHFFK.T	3

YOR211C

5.2%

902

101523

8.0

MGM1 SGDID:S000005737, Chr XV from 741632-738924, reverse complement, Verified ORF, "Mitochondrial GTPase related to dynamin, present in a complex containing Ugo1p and Fzo1p; required for normal morphology of cristae and for stability of Tim11p; homolog of human OPA1 involved in autosomal dominant optic atrophy"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_68.23665.23665.3	2.5015	0.0993	91.9%	5321.1543	5319.099	3	3.295	15.2%	1	K.GLRTIGVITKLDLVDPEKARSILNNKKYPLSMGYVGVITKTPSSINR.K	3

YPL049C

452

49356

8.6

DIG1 SGDID:S000005970, Chr XVI from 463836-462478, reverse complement, Verified ORF, "Regulatory protein of unknown function, constitutively-expressed, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_62.21708.21708.2	2.0164	0.1884	100.0%	2287.2961	2287.235	48	3.62	26.2%	1	R.SEEGS*RNSSVGSSANAGPTQQR.A	2

YBL081W

368

40767

8.6

YBL081W SGDID:S000000177, Chr II from 71863-72969, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_5.02285.02285.2	4.7163	0.2424	100.0%	2256.7048	2253.9944	36	4.836	47.1%	1	S.NNNNNNNNNSNNNNNLYN.Q	2

YLR372W

345

39465

9.3

SUR4 SGDID:S000004364, Chr XII from 867353-868390, Verified ORF, "Elongase, involved in fatty acid and sphingolipid biosynthesis; synthesizes very long chain 20-26-carbon fatty acids from C18-CoA primers; involved in regulation of sphingolipid biosynthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_18.07154.07154.3	2.7805	0.2108	100.0%	1645.8146	1648.6348	164	4.918	34.4%	1	K.ESEVSGSVAS*GSSTGVK.T	3

YJR154W

346

38972

6.5

YJR154W SGDID:S000003915, Chr X from 725699-726739, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_16.06108.06108.2	2.1411	0.1015	98.2%	1990.1836	1990.0917	9	3.703	37.5%	1	K.ETTVATRSVLHSSTVLK.D	2

Reverse_YLR429W

4.8%

651

72553

5.9

CRN1 SGDID:S000004421, Chr XII from 990773-992728, Verified ORF, "Coronin, cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_74.25756.25756.3	2.5876	0.0859	91.3%	3693.9736	3697.0579	28	2.811	19.2%	1	K.KDRAVTALYNGDYSFSMSTVMDPHKLTIMDK.G	3

Reverse_YLL002W

4.8%

436

50096

9.4

RTT109 SGDID:S000003925, Chr XII from 146290-147600, Verified ORF, "Protein with a role in regulation of Ty1 transposition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_47.16769.16769.3	2.6529	0.1129	95.7%	2470.4644	2474.5505	303	2.981	27.5%	1	R.INTFAEIAGEETDY*EEGTIYK.K	3

YER095W

4.8%

400

42963

4.9

RAD51 SGDID:S000000897, Chr V from 349976-351178, Verified ORF, "Strand exchange protein, forms a helical filament with DNA that searches for homology; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; homolog of Dmc1p and bacterial RecA protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_29.10761.10761.3	2.533	0.1196	95.7%	2176.1943	2176.3691	124	3.338	30.6%	1	K.PIGGNIMAHSSTTRLGFKK.G	3

Reverse_YBL023C

4.7%

868

98780

5.1

MCM2 SGDID:S000000119, Chr II from 177529-174923, reverse complement, Verified ORF, "Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_74.25668.25668.4	4.0101	0.0853	91.7%	4878.2563	4884.216	115	2.731	15.8%	1	K.SEALHRYNVELSESNMEGLTRIRAGYVSRGTEDTYELLFSK.L	4

U	YML085C	1	1	4.7%	447	49800	5.1	TUB1 SGDID:S000004550, Chr XIII from 99400-99376,99259-97941, reverse complement, Verified ORF, "Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules"
U	YML124C	1	1	4.7%	445	49694	5.2	TUB3 SGDID:S000004593, Chr XIII from 23684-23660,23361-22049, reverse complement, Verified ORF, "Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_Mit_09102008_25.09353.09353.2	2.6105	0.0047	93.7%	2438.7153	2439.6868	16	3.442	35.0%	1	R.FDGSLNVDLNEFQTNLVPYPR.I	2

YNR023W

4.6%

566

63871

5.7

SNF12 SGDID:S000005306, Chr XIV from 670420-672120, Verified ORF, "73 kDa subunit of the 11-subunit SWI/SNF chromatin remodeling complex involved in transcriptional regulation; homolog of Rsc6p subunit of the RSC chromatin remodeling complex; deletion mutants are temperature-sensitive"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_29.10675.10675.4	3.2345	0.1233	91.4%	2870.9436	2871.1423	124	3.38	23.3%	1	K.PSNGKGSRKSSKAATPDT*KNFFHAKK.K	4

contaminant_KERATIN03

4.6%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_29.10751.10751.2	3.7691	0.459	100.0%	2873.6921	2874.2134	1	6.95	38.5%	1	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	2

YFL047W

4.5%

714

82208

5.8

RGD2 SGDID:S000001847, Chr VI from 40421-42565, Verified ORF, "GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_24.08945.08945.4	3.4367	0.0917	92.1%	3798.7366	3800.0918	9	2.51	19.9%	1	K.Y*KTGSFKPQAIVYNNYYNPGSFQNFGVDLETR.C	4

U	YAL005C	2	2	4.5%	642	69768	5.1	SSA1 SGDID:S000000004, Chr I from 141433-139505, reverse complement, Verified ORF, "ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall"
U	YLL024C	2	2	4.5%	639	69470	5.1	SSA2 SGDID:S000003947, Chr XII from 97484-95565, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall"
U	YER103W	2	2	4.5%	642	69651	5.1	SSA4 SGDID:S000000905, Chr V from 364585-366513, Verified ORF, "Heat shock protein that is highly induced upon stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the HSP70 family; cytoplasmic protein that concentrates in nuclei upon starvation"
U	YBL075C	2	2	4.5%	649	70547	5.2	SSA3 SGDID:S000000171, Chr II from 86446-84497, reverse complement, Verified ORF, "ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_Mit_09102008_9.03826.03826.2	3.8287	0.3928	100.0%	1787.9884	1789.0819	1	6.916	62.5%	1	R.IINEPTAAAIAYGLDKK.G	2
	Jamie_Mit_09102008_13.05317.05317.2	2.7565	0.1734	100.0%	1527.7543	1527.6862	2	5.355	68.2%	1	R.ARFEELCADLFR.S	2

U	YGR192C	1	1	4.5%	332	35747	7.0	TDH3 SGDID:S000003424, Chr VII from 883815-882817, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "
U	YJR009C	1	1	4.5%	332	35847	7.0	TDH2 SGDID:S000003769, Chr X from 454595-453597, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "
U	YJL052W	1	1	4.5%	332	35750	8.3	TDH1 SGDID:S000003588, Chr X from 338187-339185, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_Mit_09102008_3.01213.01213.2	2.589	0.1192	100.0%	1376.7322	1375.5217	285	4.383	46.4%	1	R.TASGNIIPSSTGAAK.A	2

Reverse_YHR084W

4.4%

688

77867

5.7

STE12 SGDID:S000001126, Chr VIII from 274176-276242, Verified ORF, "Transcription factor that is activated by a MAP kinase signaling cascade, activates genes involved in mating or pseudohyphal/invasive growth pathways; cooperates with Tec1p transcription factor to regulate genes specific for invasive growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_36.13109.13109.2	1.7393	0.0838	90.9%	3344.2922	3346.4285	66	2.363	20.7%	1	R.NTDVELSHAGGEESQVVLTNSDPTPMSIEK.N	2

YDR475C

4.3%

876

98691

9.6

YDR475C SGDID:S000002883, Chr IV from 1410084-1407454, reverse complement, Uncharacterized ORF, "Protein of unknown function; previously annotated as two separate ORFs, YDR474C and YDR475C, which were merged as a result of corrections to the systematic reference sequence"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_60.20982.20982.3	3.1059	0.0919	96.7%	4210.3545	4210.4385	26	3.206	17.6%	1	K.SRSSSKSRIRDKSKPSSPTATDINSSASASRSRSPQIK.F	3

YOR204W

4.3%

604

65553

7.8

DED1 SGDID:S000005730, Chr XV from 722911-724725, Verified ORF, "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all yeast mRNAs; mutations in human DEAD-box DBY are a frequent cause of male infertility"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_42.15104.15104.3	2.9104	0.1455	99.2%	2778.9329	2776.983	42	3.734	27.0%	1	R.IGRTGRAGNTGLAT*AFFNSENSNIVK.G	3

YFL039C

4.3%

375

41690

5.7

ACT1 SGDID:S000001855, Chr VI from 54695-54686,54377-53260, reverse complement, Verified ORF, "Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_14.05494.05494.2	2.3686	0.2196	100.0%	1791.8983	1791.9554	1	4.452	53.3%	1	K.SYELPDGQVITIGNER.F	2

YKL054C

738

83973

5.0

DEF1 SGDID:S000001537, Chr XI from 338397-336181, reverse complement, Verified ORF, "RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and proteolysis of RNAPII"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_5.02281.02281.3	4.4294	0.2722	100.0%	3614.5308	3614.653	1	4.741	23.3%	1	K.NNYNYYQTQNGQEQQSPNQGVAQHSEDSQQK.Q	3

Reverse_YDR436W

710

78492

9.3

PPZ2 SGDID:S000002844, Chr IV from 1334811-1336943, Verified ORF, "Serine/threonine protein phosphatase Z, isoform of Ppz1p; involved in regulation of potassium transport, which affects osmotic stability, cell cycle progression, and halotolerance"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_60.21256.21256.3	3.1712	0.0494	93.0%	3478.0613	3478.6204	244	2.639	21.6%	1	R.ENDEWENSSDTPDSWLLDNILGFDPVDTPR.S	3

YKL032C

597

67856

8.1

IXR1 SGDID:S000001515, Chr XI from 381501-379708, reverse complement, Verified ORF, "Protein that binds DNA containing intrastrand cross-links formed by cisplatin, contains two HMG (high mobility group box) domains, which confer the ability to bend cisplatin-modified DNA; mediates aerobic transcriptional repression of COX5b"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_76.26661.26661.2	2.6726	0.3113	100.0%	2634.5332	2631.597	56	5.466	25.0%	1	A.NAIDSVTGSNSNSTNPNTPVSPPIS.L	2

YGL078C

523

58827

9.1

DBP3 SGDID:S000003046, Chr VII from 361862-360291, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_13.05100.05100.2	1.8953	0.1123	96.7%	2520.112	2520.5918	223	3.709	23.8%	1	R.IGRTGRAGQTGTAHTLFTEQEK.H	2

Reverse_YAL001C

4.1%

1160

132108

9.4

TFC3 SGDID:S000000001, Chr I from 151168-151099,151008-147596, reverse complement, Verified ORF, "Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauB domain of TFIIIC that binds DNA at the BoxB promoter sites of tRNA and similar genes; cooperates with Tfc6p in DNA binding"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_44.15843.15843.3	2.4893	0.1175	93.3%	5165.6943	5166.677	19	3.225	14.9%	1	R.QLSRLSRAS*FGGFNVVKGKVVTGGNSSPSDEASKPEQATSVHQELKIR.K	3

YER110C

4.1%

1113

122601

4.6

KAP123 SGDID:S000000912, Chr V from 382099-378758, reverse complement, Verified ORF, "Karyopherin beta, mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and import of histones H3 and H4; localizes to the nuclear pore, nucleus, and cytoplasm; exhibits genetic interactions with RAI1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_24.09123.09123.4	3.8327	0.109	93.8%	5047.9185	5042.824	283	3.473	14.4%	1	K.SKNKRSSAVGAASELALGMKEQNPFVHEMLEALVIRLTSDKSLEVR.G	4

YBR142W

4.1%

773

87048

8.4

MAK5 SGDID:S000000346, Chr II from 528311-530632, Verified ORF, "Essential nucleolar protein, putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_65.22871.22871.3	3.2218	0.0447	93.0%	3406.1106	3408.864	14	3.559	23.4%	1	K.SIPVIMQGVDVMGKASTGSGKTLAYGIPIVEK.L	3

YAL035W

4.0%

1002

112268

5.8

FUN12 SGDID:S000000033, Chr I from 76428-79436, Verified ORF, "GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_54.19112.19112.3	2.9209	0.0956	95.8%	4633.8623	4633.5044	255	2.814	16.0%	1	K.KNQQNYWDEEFEEDAAQNEEISATPTPNPESSAGADDTSR.E	3

YDR181C

4.0%

481

55410

9.5

SAS4 SGDID:S000002589, Chr IV from 827350-825905, reverse complement, Verified ORF, "Subunit of the SAS complex (Sas2p, Sas4p, Sas5p), which acetylates free histones and nucleosomes and regulates transcriptional silencing; required for the HAT activity of Sas2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_67.23325.23325.2	1.9097	0.1334	98.1%	2091.0708	2093.3481	161	3.607	33.3%	1	R.NLARRPASSDSLLKLVS*GK.D	2

YJR095W

4.0%

322

35340

9.8

SFC1 SGDID:S000003856, Chr X from 609690-610658, Verified ORF, "Mitochondrial succinate-fumarate transporter, transports succinate into and fumarate out of the mitochondrion; required for ethanol and acetate utilization"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_43.15548.15548.2	2.1772	0.1027	98.1%	1450.348	1451.6782	55	3.737	54.2%	1	K.DKSISLEKQSGMK.K	2

Reverse_YGR216C

609

70355

9.1

GPI1 SGDID:S000003448, Chr VII from 924467-922638, reverse complement, Verified ORF, "Membrane protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI), the first intermediate in the synthesis of glycosylphosphatidylinositol (GPI) anchors; human and mouse GPI1p are functional homologs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_43.15525.15525.3	2.7665	0.0624	90.1%	2971.326	2968.2683	381	2.962	22.8%	1	R.FMSKFKIPNNQLELTTHKNSVTTK.L	3

YNL308C

591

68654

5.1

KRI1 SGDID:S000005252, Chr XIV from 55896-54121, reverse complement, Verified ORF, "Essential nucleolar protein required for 40S ribosome biogenesis; physically and functionally interacts with Krr1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_41.14655.14655.2	2.0097	0.0576	92.7%	2806.4922	2807.3071	16	3.369	25.0%	1	K.IKEQIKAEKETALQKKKT*KKLNK.L	2

Reverse_YJL025W

514

60357

8.1

RRN7 SGDID:S000003562, Chr X from 393883-395427, Verified ORF, "Protein involved in the transcription of 35S rRNA genes by RNA polymerase I; component of the core factor (CF) complex also composed of Rrn11p, Rrn6p and TATA-binding protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_75.26069.26069.2	1.9791	0.0584	92.2%	2514.5522	2515.869	66	3.308	28.9%	1	-.NMRHLCANKIRSICDKLQEK.S	2

Reverse_YMR193W

258

30049

10.1

MRPL24 SGDID:S000004806, Chr XIII from 650035-650811, Verified ORF, "Mitochondrial ribosomal protein of the large subunit"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_29.10910.10910.2	1.8116	0.0646	93.2%	1268.9651	1269.5444	5	3.393	61.1%	1	K.ELPYLFSMLR.R	2

YMR182C

3.8%

211

23855

9.6

RGM1 SGDID:S000004794, Chr XIII from 625166-624531, reverse complement, Verified ORF, "Putative transcriptional repressor with proline-rich zinc fingers; overproduction impairs cell growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_7.03092.03092.2	1.8733	0.0516	94.2%	1001.21216	1001.2382	118	2.799	71.4%	1	-.MRGKQPKR.N	2

YLL003W

3.7%

946

112978

9.8

SFI1 SGDID:S000003926, Chr XII from 143200-146040, Verified ORF, "Centrin (Cdc31p)-binding protein required for spindle pole body (SPB) duplication, localizes to the half-bridge of the SPB, required for progression through G(2)-M transition, has similarity to Xenopus laevis XCAP-C"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_14.05687.05687.2	2.8249	0.1835	100.0%	2193.6326	2195.4314	1	4.118	50.0%	1	R.DKFVPETSPTNIPT*DVLIK.Q	2
*	Jamie_Mit_09102008_17.06684.06684.2	2.6308	0.1717	100.0%	2275.0068	2275.4314	16	4.11	38.9%	1	R.DKFVPETSPTNIPTDVLIK.Q	2
*	Jamie_Mit_09102008_20.07737.07737.2	2.7297	0.1095	100.0%	2032.7059	2032.1687	11	3.578	46.9%	1	K.FVPETSPTNIPTDVLIK.Q	2
*	Jamie_Mit_09102008_6.02763.02763.2	2.3081	0.03	93.5%	1691.815	1688.8351	80	2.773	46.7%	1	K.QINLESTTGLNGSPTR.G	2

Reverse_YLR234W

3.7%

656

74371

8.5

TOP3 SGDID:S000004224, Chr XII from 609785-611755, Verified ORF, "DNA Topoisomerase III, conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially, involved in telomere stability and regulation of mitotic recombination"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_61.21531.21531.2	2.1045	0.0955	97.3%	2878.751	2877.2517	184	3.783	23.9%	1	R.HKAGDKT*MTAQNRLKNRLTETLLR.T	2

Reverse_YBR186W

3.7%

564

63461

5.9

PCH2 SGDID:S000000390, Chr II from 600548-602098,602212-602355, Verified ORF, "Nucleolar component of the pachytene checkpoint, which prevents chromosome segregation when recombination and chromosome synapsis are defective; also represses meiotic interhomolog recombination in the rDNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_51.18177.18177.2	2.2692	0.0675	95.9%	2427.9521	2427.4172	141	3.078	32.5%	1	K.KNS*NQKSDSGSHLSSIQEDER.F	2

Reverse_YNR051C

3.5%

515

57674

9.1

BRE5 SGDID:S000005334, Chr XIV from 718329-716782, reverse complement, Verified ORF, "Ubiquitin protease cofactor, forms deubiquitination complex with Ubp3p that coregulates anterograde and retrograde transport between the endoplasmic reticulum and Golgi compartments; null is sensitive to brefeldin A"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_16.06271.06271.3	2.4555	0.0984	92.7%	2130.625	2132.4246	37	3.412	30.9%	1	K.PLTEPRIYEVTTNNKSIR.D	3

Reverse_YMR205C

959

104618

6.7

PFK2 SGDID:S000004818, Chr XIII from 674765-671886, reverse complement, Verified ORF, "Beta subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_65.22903.22903.3	2.9721	0.0788	94.8%	3477.569	3479.785	287	2.948	18.0%	1	R.ISNYVVHSGKVGVVAATDSITKDDANFNEEAAR.A	3

YDR118W

652

75256

5.8

APC4 SGDID:S000002525, Chr IV from 685877-687835, Verified ORF, "Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_47.16723.16723.2	2.0835	0.0546	93.7%	2625.1008	2625.9907	105	3.053	26.2%	1	K.DGRLVSFLRIPST*KISKGIWDR.I	2

Reverse_YHL010C

585

67503

6.5

YHL010C SGDID:S000001002, Chr VIII from 83717-81960, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_48.17034.17034.2	2.0802	0.0471	92.0%	2176.129	2173.3909	100	3.11	31.6%	1	K.KSKSAQAAGHPQQILIT*GEK.V	2

Reverse_YNL225C

581

67400

6.0

CNM67 SGDID:S000005169, Chr XIV from 224470-222725, reverse complement, Verified ORF, "Component of the spindle pole body outer plaque; required for spindle orientation and mitotic nuclear migration"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_26.09752.09752.2	2.1463	0.0566	94.0%	2503.2517	2502.576	126	3.388	28.9%	1	R.TFHKSSNERPTSHIFNPVDK.K	2

YGR002C

476

55213

9.3

SWC4 SGDID:S000003234, Chr VII from 499910-498480, reverse complement, Verified ORF, "Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; component of the NuA4 histone acetyltransferase complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_35.12682.12682.2	2.2191	0.1474	100.0%	2082.0645	2080.2673	106	3.92	40.0%	1	K.NSWSFEEIEYLFNLCK.K	2

Reverse_YOR330C

1254

143502

8.8

MIP1 SGDID:S000005857, Chr XV from 943380-939616, reverse complement, Verified ORF, "Catalytic subunit of the mitochondrial DNA polymerase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_51.18267.18267.4	3.3349	0.0839	90.8%	5095.0566	5098.5605	33	2.914	15.0%	1	K.DECFSKYPESNFRGIKQFHEDLSRGQLPPLPFSIPDTILTKK.G	4

YPR115W

1083

120395

9.3

YPR115W SGDID:S000006319, Chr XVI from 754875-758126, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_38.13707.13707.3	2.9304	0.0734	93.3%	4090.2	4093.3213	24	3.003	17.9%	1	K.SSQRSKNSTYITPVDSFVNLSEKVTPSSSVTTLNTR.K	3

Reverse_YDR475C

876

98691

9.6

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_9.03904.03904.3	3.0625	0.0564	92.4%	3254.8145	3256.597	411	2.948	19.6%	1	K.RKQSKTLPTFGDEIPPNFKITPT*AGESSK.K	3

Reverse_YNL103W

672

74373

5.8

MET4 SGDID:S000005047, Chr XIV from 427737-429755, Verified ORF, "Lecine-zipper transcriptional activator, responsible for the regulation of the sulfur amino acid pathway, requires different combinations of the auxiliary factors Cbf1p, Met28p, Met31p and Met32p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_35.12804.12804.2	2.2642	0.0266	91.4%	2535.1882	2536.8972	147	3.793	26.2%	1	K.RDVPVKKNKLDGSHSRKLSNEK.H	2

Reverse_YER051W

492

56530

6.8

YER051W SGDID:S000000853, Chr V from 254655-256133, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_14.05511.05511.2	2.0321	0.089	95.6%	1867.1943	1866.0349	46	3.194	36.7%	1	K.GKQTILAYATLY*EGEK.H	2

YLR353W

3.2%

603

66289

6.3

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_77.26690.26690.2	2.0715	0.1434	98.7%	1927.3354	1925.8772	64	3.819	33.3%	1	K.SSTSDDSHSPGAPGT*SARK.I	2

YOL138C

1341

149269

7.0

YOL138C SGDID:S000005498, Chr XV from 65349-61324, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_67.23384.23384.4	3.7677	0.0924	91.1%	4742.0566	4737.084	217	3.873	15.0%	1	R.DVKWMPGYNFASKNDQGSSTYGNLKSGYKFASIHDSGYLLK.F	4

Reverse_YLR410W

1146

129755

8.6

VIP1 SGDID:S000004402, Chr XII from 937538-940978, Verified ORF, "Protein of unknown function probably involved in the function of the cortical actin cytoskeleton; putative ortholog of S. pombe asp1+"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_61.21568.21568.4	3.5627	0.1415	94.8%	4027.5764	4022.3435	17	3.108	20.1%	1	K.QTNKNLFLPSMESPAS*PLNNKTEQQPVEDSEIPEK.K	4

Reverse_YMR124W

943

105914

6.9

YMR124W SGDID:S000004731, Chr XIII from 514455-517286, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_13.05150.05150.3	3.0488	0.133	98.8%	3531.4573	3532.6104	301	3.147	21.4%	1	K.YLFTDNNINEQNMSINVNSLRRGNGDSER.R	3

YGR128C

713

80191

5.2

UTP8 SGDID:S000003360, Chr VII from 750096-747955, reverse complement, Verified ORF, "Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_25.09504.09504.3	2.2262	0.1515	95.2%	2285.1655	2286.5908	175	3.443	26.2%	1	K.SAVINSEKSHNSKTIAIGISTK.N	3

YNL008C

669

76741

6.5

ASI3 SGDID:S000004953, Chr XIV from 618221-616212, reverse complement, Verified ORF, "Putative integral membrane E3 ubiquitin ligase; genetic interactions suggest a role in negative regulation of amino acid uptake"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_55.19512.19512.3	2.7073	0.0988	95.5%	2781.3862	2782.092	46	3.308	25.0%	1	K.PRVGKRKKRDLNKYVTEKNYK.K	3

YDR091C

608

68340

8.7

RLI1 SGDID:S000002498, Chr IV from 628529-626703, reverse complement, Verified ORF, "Essential iron-sulfur protein required for ribosome biogenesis and translation initiation; facilitates binding of a multifactor complex (MFC) of translation initiation factors to the small ribosomal subunit; predicted ABC family ATPase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_34.12372.12372.2	2.6752	0.2805	100.0%	2416.2266	2413.445	38	4.988	33.3%	1	K.LDSQMDKEQKSSGNYFFLD.N	2

Reverse_YDR306C

478

54437

8.6

YDR306C SGDID:S000002714, Chr IV from 1075165-1073729, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_74.25690.25690.2	2.2046	0.0765	96.4%	1759.9408	1759.7876	19	2.64	46.4%	1	K.SALGLSGSCELYLTK.L	2

YMR031C

843

93345

6.3

YMR031C SGDID:S000004633, Chr XIII from 334742-332211, reverse complement, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_37.13336.13336.2	2.1378	0.1793	100.0%	2529.1763	2529.6335	258	4.015	22.9%	1	R.SYSITSASSVLSGASGS*FNSTVNPK.P	2

YOR014W

757

85335

6.3

RTS1 SGDID:S000005540, Chr XV from 357673-359946, Verified ORF, "B-type regulatory subunit of protein phosphatase 2A (PP2A); homolog of the mammalian B' subunit of PP2A"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_28.10410.10410.3	2.8549	0.0518	90.4%	2591.6985	2592.8638	321	2.709	23.9%	1	R.LIKKTTGS*SSSSSSKKKDKEKEK.E	3

Reverse_YFL013C

692

78753

5.2

IES1 SGDID:S000001881, Chr VI from 109924-107846, reverse complement, Verified ORF, "Subunit of the INO80 chromatin remodeling complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_24.08968.08968.2	2.2182	0.0825	97.0%	2399.2922	2399.6775	90	3.328	30.0%	1	R.ETCRLIFKGAPAGDELGNFFR.V	2

Reverse_YHR111W

440

49361

6.5

UBA4 SGDID:S000001153, Chr VIII from 333075-334397, Verified ORF, "Protein that activates Urm1p before its conjugation to proteins (urmylation); one target is the thioredoxin peroxidase Ahp1p, suggesting a role of urmylation in the oxidative stress response"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_8.03347.03347.2	1.9079	0.0928	94.4%	1575.0308	1574.777	136	3.007	45.8%	1	R.VPYT*VVNIHPNLK.T	2

Reverse_YDR180W

1493

171101

6.8

SCC2 SGDID:S000002588, Chr IV from 821290-825771, Verified ORF, "Putative protein kinase and subunit of cohesin loading factor (Scc2p-Scc4p), a complex required for the loading of cohesin complexes onto chromosomes; involved in establishing sister chromatid cohesion during DSB repair via histone H2AX"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_43.15617.15617.4	3.7098	0.0652	91.2%	5101.1797	5097.6704	225	2.203	15.5%	1	K.NIYPHLHSLCSSCAKAVRATDHRHT*AVSWILPMAEDIERVNMK.P	4

Reverse_YDR507C

1142

129858

9.2

GIN4 SGDID:S000002915, Chr IV from 1465776-1462348, reverse complement, Verified ORF, "Protein kinase involved in bud growth and assembly of the septin ring, proposed to have kinase-dependent and kinase-independent activities; undergoes autophosphorylation; similar to Kcc4p and Hsl1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_39.14087.14087.3	2.8499	0.0894	94.5%	3627.4744	3625.845	182	3.056	18.0%	1	K.SSFNKSLRKSSGPTTLNSSSASSATFKNFSIPK.K	3

YLR383W

1114

128008

7.5

SMC6 SGDID:S000004375, Chr XII from 885288-888632, Verified ORF, "Protein involved in structural maintenance of chromosomes; required for interchromosomal and sister chromatid recombination; homologous to S. pombe rad18"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_55.19295.19295.4	3.2579	0.1018	92.2%	3272.6965	3269.6396	92	2.817	21.0%	1	R.LNFIVGNNGSGKSAILTAITIGLGAKAS*ETNR.G	4

Q0055

854

98008

9.6

AI2 SGDID:S000007262, Chr Mito from 13818-13986,16435-18830, Verified ORF, "Reverse transcriptase required for splicing of the COX1 pre-mRNA, encoded by a mobile group II intron within the mitochondrial COX1 gene"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_65.22834.22834.3	2.9725	0.2212	100.0%	3290.6697	3293.582	7	3.847	24.0%	1	R.HKMNMTDSNYTPDEILDRYKYMLPR.S	3

YMR102C

2.8%

834

94254

8.7

YMR102C SGDID:S000004708, Chr XIII from 472351-469847, reverse complement, Uncharacterized ORF, "Protein of unknown function, transcription is activated by paralogous transcription factors Yrm1p and Yrr1p along with genes involved in multidrug resistance"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_76.26556.26556.3	2.6959	0.083	92.4%	2703.2932	2707.7595	79	3.217	27.3%	1	R.SGSLRSIFSKSMSRSSSQNNEEK.P	3

U	YDL066W	1	1	2.8%	428	48190	8.8	IDP1 SGDID:S000002224, Chr IV from 334835-336121, Verified ORF, "Mitochondrial NADP-specific isocitrate dehydrogenase, catalyzes the oxidation of isocitrate to alpha-ketoglutarate; not required for mitochondrial respiration and may function to divert alpha-ketoglutarate to biosynthetic processes"
U	YNL009W	1	1	2.9%	420	47856	9.2	IDP3 SGDID:S000004954, Chr XIV from 614822-616084, Verified ORF, "Peroxisomal NADP-dependent isocitrate dehydrogenase, catalyzes oxidation of isocitrate to alpha-ketoglutarate with the formation of NADP(H+), required for growth on unsaturated fatty acids"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_Mit_09102008_40.14458.14458.2	2.1575	0.0382	93.9%	1432.3949	1430.771	17	2.922	54.5%	1	K.KLILPYLDVDLK.Y	2

YGR237C

2.7%

785

89241

9.1

YGR237C SGDID:S000003469, Chr VII from 965660-963303, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_44.15716.15716.2	2.2215	0.0267	91.0%	2561.8123	2561.9795	1	3.604	32.5%	1	K.TALKWDNEDPKMKFTSHPMRK.T	2

Reverse_YHR019C

2.7%

554

62207

5.8

DED81 SGDID:S000001061, Chr VIII from 143551-141887, reverse complement, Verified ORF, "Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_57.20222.20222.2	1.8989	0.158	98.4%	2050.3323	2053.019	57	3.89	35.7%	1	R.QDIFWYYADTDIGER.K	2

Reverse_YHL035C

1592

180925

8.5

YHL035C SGDID:S000001027, Chr VIII from 32754-27976, reverse complement, Uncharacterized ORF, "Protein of unknown function, member of the ATP-binding cassette (ABC) family, potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_9.03571.03571.3	2.4874	0.1186	93.6%	4493.094	4496.177	78	3.741	16.2%	1	K.ICGTIPELLRFLATIITSKGAGTRGVIGIKS*QPDVKFSVNR.I	3

Reverse_YDR135C

1515

171120

8.4

YCF1 SGDID:S000002542, Chr IV from 727546-722999, reverse complement, Verified ORF, "Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_49.17602.17602.2	2.0855	0.0373	90.3%	2581.1777	2581.799	99	3.172	25.0%	1	K.NDS*LLQGPSDFEAVKGNDLVIIR.D	2
*	Jamie_Mit_09102008_39.14050.14050.3	2.9356	0.0538	93.9%	2169.298	2172.403	44	3.712	31.2%	1	K.INNLIESIVRTREDKY*K.M	3

YMR129W

1337

151652

6.7

POM152 SGDID:S000004736, Chr XIII from 527803-531816, Verified ORF, "Nuclear pore membrane glycoprotein; may be involved in duplication of nuclear pores and nuclear pore complexes during S-phase;"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_62.21766.21766.4	3.5372	0.1459	95.7%	4191.8335	4192.499	28	3.286	19.1%	1	K.KDQSVLKSHSNDFEEGSTIRYLAVTLQDIGFYQIK.K	4

YGL140C

1219

137476

8.1

YGL140C SGDID:S000003108, Chr VII from 245017-241358, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_58.20501.20501.4	3.304	0.1457	94.5%	3432.4385	3431.4854	214	4.05	20.4%	1	K.DDASLDLPMTSEPKGNSSSTSDTSSSPLTLTK.T	4

YJL012C

721

83155

6.8

VTC4 SGDID:S000003549, Chr X from 413314-411149, reverse complement, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_23.08823.08823.4	3.4675	0.2168	98.7%	2433.8816	2437.5835	366	4.052	28.7%	1	K.YYEIVAFFDHY*FNGDQISK.I	4

Reverse_YHR168W

499

55536

9.1

MTG2 SGDID:S000001211, Chr VIII from 440379-441878, Verified ORF, "Putative GTPase, member of the Obg family; peripheral protein of the mitochondrial inner membrane that associates with the large ribosomal subunit; required for mitochondrial translation, possibly via a role in ribosome assembly"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_26.09911.09911.2	1.8249	0.0783	93.7%	1255.0765	1252.2828	322	3.283	45.8%	1	R.FFSVAGSGGAGS*K.C	2

YKL050C

2.5%

922

103144

6.1

YKL050C SGDID:S000001533, Chr XI from 345264-342496, reverse complement, Uncharacterized ORF, "Putative protein of unknown function"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_36.12957.12957.2	2.0693	0.1504	99.0%	2329.4	2328.4087	47	3.654	27.3%	1	K.DIDSSASARS*ITGVSGVLDDGPK.T	2

YBL052C

2.5%

831

97582

6.5

SAS3 SGDID:S000000148, Chr II from 121877-119382, reverse complement, Verified ORF, "Histone acetyltransferase catalytic subunit of NuA3 complex that acetylates histone H3, involved in transcriptional silencing; homolog of the mammalian MOZ proto-oncogene; sas3 gcn5 double mutation confers lethality"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_78.27078.27078.2	2.3753	0.031	94.1%	2381.9053	2380.7466	193	2.558	32.5%	1	R.KESKFGTPEKPLSDLGLLTYR.T	2

Reverse_YGR083C

2.5%

651

70852

9.4

GCD2 SGDID:S000003315, Chr VII from 646819-644864, reverse complement, Verified ORF, "Delta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_57.20186.20186.2	1.9015	0.1222	97.6%	1791.0187	1793.9255	43	3.448	36.7%	1	K.AAKDPTSPDILS*IEQK.L	2

YMR192W

2.4%

720

82131

5.4

GYL1 SGDID:S000004804, Chr XIII from 647117-649279, Verified ORF, "Putative GTPase activating protein (GAP) that may have a role in polarized exocytosis; stimulates Gyp5p GAP activity on Ypt1p, colocalizes with Gyp5p at sites of polarized growth; interacts with Gyp5p, Rvs161p, and Rvs167p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_77.26829.26829.4	2.5075	0.1593	91.4%	1934.0215	1936.4371	345	3.575	30.2%	1	K.LLQDSMMKVAITPKTMK.K	4

YGL045W

2.4%

542

60864

9.2

RIM8 SGDID:S000003013, Chr VII from 414106-415734, Verified ORF, "Protein of unknown function, involved in the proteolytic activation of Rim101p in response to alkaline pH; has similarity to A. nidulans PalF"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_15.05749.05749.2	1.8483	0.083	94.1%	1497.0586	1497.6084	21	3.398	50.0%	1	R.VKT*GNSPTSKNKR.I	2

Reverse_YDR522C

2.4%

502

55939

7.0

SPS2 SGDID:S000002930, Chr IV from 1485293-1483785, reverse complement, Verified ORF, "Protein expressed during sporulation, redundant with Sps22p for organization of the beta-glucan layer of the spore wall; S. pombe ortholog is a spore wall component"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_2.00575.00575.2	1.9049	0.054	91.2%	1405.7635	1406.449	46	3.247	50.0%	1	K.EKKGNDNDTEQK.G	2

Reverse_YOR018W

2.3%

837

92349

8.8

ROD1 SGDID:S000005544, Chr XV from 364368-366881, Verified ORF, "Membrane protein; overexpression confers resistance to the GST substrate o-dinitrobenzene as well as to zinc and calcium; contains 2 PY motifs, which are required for Rod1p interaction with Rsp5p, a hect-type ubiquitin ligase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_60.21063.21063.3	2.6842	0.0662	91.8%	2074.654	2078.1545	345	3.522	31.9%	1	K.LNNSSKSSGPLPLLSSTSK.H	3

YBR203W

2.2%

924

104505

9.6

COS111 SGDID:S000000407, Chr II from 629163-631937, Verified ORF, "Protein required for wild-type resistance to the antifungal drug ciclopirox olamine; not related to the COS family of subtelomerically-encoded proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_39.14188.14188.2	2.3724	0.0199	92.5%	2431.9321	2430.717	3	2.489	36.8%	1	K.LCVDDDIDMDKMKVGKPT*LR.I	2

Reverse_YDR239C

2.2%

787

86433

6.6

YDR239C SGDID:S000002647, Chr IV from 943414-941051, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_24.09241.09241.2	1.8584	0.0793	93.5%	1824.4569	1823.8253	6	3.17	43.8%	1	K.TNGNSDLAALVTSKSGK.S	2

Reverse_YLR114C

2.2%

764

86426

4.5

YLR114C SGDID:S000004104, Chr XII from 377239-374945, reverse complement, Uncharacterized ORF, "Mutation is syntheticly lethal with apl2 vps1 double mutant"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_57.20166.20166.3	2.3443	0.1043	92.1%	2021.497	2024.2311	77	3.283	32.8%	1	K.YHLGLGMMAKQIANSTK.S	3

Reverse_YPL058C

1511

171064

6.8

PDR12 SGDID:S000005979, Chr XVI from 450374-445839, reverse complement, Verified ORF, "Plasma membrane weak-acid-inducible ATP-binding cassette (ABC) transporter, required for weak organic acid resistance, strongly induced by sorbate and benzoate, regulated by War1p, mutants exhibit sorbate hypersensitivity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_20.07840.07840.3	3.066	0.0397	90.6%	3936.9421	3940.4604	157	3.259	20.2%	1	R.PTKCKLAFDITEKVT*IKPFHFDLEPCYIVYGK.Y	3

Reverse_YOL100W

1081

121660

9.6

PKH2 SGDID:S000005460, Chr XV from 129236-132481, Verified ORF, "Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls endocytosis; activates Ypk1p and Ykr2p, components of signaling cascade required for maintenance of cell wall integrity; redundant with Pkh1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_76.26433.26433.3	2.5255	0.1169	94.2%	2519.7244	2522.7002	1	3.654	29.5%	1	K.KTDISTALMVTSYAGDGIVSGFK.F	3

Reverse_YLR274W

775

86411

5.7

CDC46 SGDID:S000004264, Chr XII from 691557-693884, Verified ORF, "Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_75.26061.26061.2	1.9531	0.0968	95.0%	1962.0311	1963.2931	307	3.41	33.3%	1	R.RLTQYSTSWGIPLRRK.L	2

YIL022W

431

48854

9.4

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_78.27045.27045.2	1.4286	0.1271	94.0%	860.7671	860.04456	106	4.041	56.2%	1	R.KAAAATAKK.L	2

Reverse_YJL198W

2.0%

881

97689

7.1

PHO90 SGDID:S000003734, Chr X from 60843-63488, Verified ORF, "Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_46.16461.16461.2	2.082	0.1451	98.7%	2039.4103	2039.5957	267	3.226	32.4%	1	K.IGLLLGTVLIIFYIKYAK.K	2

YDR458C

2.0%

663

76377

7.8

YDR458C SGDID:S000002866, Chr IV from 1382036-1380045, reverse complement, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_12.04844.04844.3	2.2918	0.0878	91.8%	1592.4844	1592.7928	98	3.268	43.8%	1	R.NLDPKT*LKVSQLR.R	3

YER119C

2.0%

448

48840

8.8

AVT6 SGDID:S000000921, Chr V from 400838-399492, reverse complement, Verified ORF, "Vacuolar transporter, exports aspartate and glutamate from the vacuole; member of a family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_76.26374.26374.1	1.5923	0.2941	100.0%	929.65	930.9011	2	5.208	62.5%	1	N.VS*ISATSAD.E	1

YBR202W

1.9%

845

94875

5.3

CDC47 SGDID:S000000406, Chr II from 625767-628304, Verified ORF, "Component of the hexameric MCM complex, which is important for priming origins of DNA replication in G1 and becomes an active ATP-dependent helicase that promotes DNA melting and elongation when activated by Cdc7p-Dbf4p in S-phase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_72.25123.25123.4	2.5551	0.1456	91.7%	2114.7703	2120.4307	207	3.436	30.0%	1	R.RYFLYFKPLSQNCARR.Y	4

Reverse_YIL105C

1.9%

686

77995

7.9

SLM1 SGDID:S000001367, Chr IX from 169638-167578, reverse complement, Verified ORF, "Phosphoinositide PI4,5P(2) binding protein, forms a complex with Slm2p; acts downstream of Mss4p in a pathway regulating actin cytoskeleton organization in response to stress; subunit of and phosphorylated by the TORC2 complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_44.15846.15846.2	2.2401	0.2606	91.7%	1427.9521	1427.4703	62	5.228	50.0%	1	K.AHLVFKADSGTS*N.P	2

YOR291W

1472

166749

6.1

YOR291W SGDID:S000005817, Chr XV from 861172-865590, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_51.18037.18037.3	2.8525	0.0884	94.2%	3061.6143	3065.4343	393	3.229	22.1%	1	K.SFLYNGTNIIRARIAPGQTAALAMVVR.T	3

YDL240W

1017

116660

8.2

LRG1 SGDID:S000002399, Chr IV from 22823-25876, Verified ORF, "Putative GTPase-activating protein (GAP) involved in the Pkc1p-mediated signaling pathway that controls cell wall integrity; appears to specifically regulate 1,3-beta-glucan synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_76.26634.26634.2	2.1327	0.1986	100.0%	2272.8755	2274.5107	28	3.737	32.4%	1	K.MDIHNLSTVITPNILYLR.H	2

Reverse_YIL038C

836

94403

5.6

NOT3 SGDID:S000001300, Chr IX from 282651-280141, reverse complement, Verified ORF, "Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_14.05658.05658.2	1.5207	0.1069	90.1%	1701.8387	1700.6708	65	3.395	42.9%	1	K.TSTNSITSSASTVKR.D	2

YMR179W

758

84697

6.0

SPT21 SGDID:S000004791, Chr XIII from 619857-622133, Verified ORF, "Protein required for normal transcription at several loci including HTA2-HTB2 and HHF2-HHT2, but not required at the other histone loci; functionally related to Spt10p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_17.06560.06560.2	1.7309	0.1241	95.9%	1688.8167	1688.7942	16	3.278	38.5%	1	K.T*NDLFSTFIHSGIR.V	2

YHR186C

1557

177608

7.8

KOG1 SGDID:S000001229, Chr VIII from 480672-475999, reverse complement, Verified ORF, "Subunit of TORC1, a rapamycin-sensitive complex involved in growth control that contains Tor1p or Tor2p, Lst8p and Tco89p; contains four HEAT repeats and seven WD-40 repeats; may act as a scaffold protein to couple TOR and its effectors"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_44.15914.15914.3	3.9281	0.1305	100.0%	3298.7214	3299.5334	17	4.265	23.1%	1	R.HGFEEQYQSDQLLQSLANDFIFYFDDK.R	3
*	Jamie_Mit_09102008_44.15827.15827.2	4.4138	0.4475	100.0%	3301.138	3299.5334	1	7.104	38.5%	1	R.HGFEEQYQSDQLLQSLANDFIFYFDDK.R	2

YGR270W

1379

157406

5.2

YTA7 SGDID:S000003502, Chr VII from 1027376-1031515, Verified ORF, "Protein of unknown function, member of CDC48/PAS1/SEC18 family of ATPases, potentially phosphorylated by Cdc28p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_66.23001.23001.2	1.7764	0.0931	93.9%	2771.4922	2771.167	39	2.989	27.3%	1	R.RTRSSRHPETPPPVRRALRSRTR.H	2

Reverse_YOR124C

1272

146354

5.2

UBP2 SGDID:S000005650, Chr XV from 558642-554824, reverse complement, Verified ORF, "Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins, cleaves at the C terminus of ubiquitin fusions; capable of cleaving polyubiquitin and possesses isopeptidase activity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_47.16878.16878.2	1.9182	0.0575	90.6%	2485.912	2488.9114	177	3.738	25.0%	1	R.TLGSDDRSLLERQRNKMVKLK.Q	2

Reverse_YGL140C

1219

137476

8.1

YGL140C SGDID:S000003108, Chr VII from 245017-241358, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_73.25609.25609.2	2.1454	0.0422	92.5%	2368.66	2370.628	104	3.137	30.0%	1	R.PEQRT*LGKYATARALAEKASK.S	2

YIR019C

1367

136110

4.3

MUC1 SGDID:S000001458, Chr IX from 393672-389569, reverse complement, Verified ORF, "GPI-anchored cell surface glycoprotein required for diploid pseudohyphal formation and haploid invasive growth, transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_23.08690.08690.2	2.5609	0.3441	100.0%	2217.5322	2215.289	50	4.924	29.5%	1	V.PTPSSSSNITSSAPSSTPFSSST.E	2

YBR133C

827

95153

6.4

HSL7 SGDID:S000000337, Chr II from 504281-501798, reverse complement, Verified ORF, "Protein arginine N-methyltransferase that exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_3.01077.01077.3	2.5345	0.2178	100.0%	1570.8212	1571.7306	294	5.233	42.3%	1	R.SIVTDDTKTLAHNR.H	3

YLR386W

1.6%

880

99773

5.5

VAC14 SGDID:S000004378, Chr XII from 893628-896270, Verified ORF, "Protein involved in regulated synthesis of PtdIns(3,5)P(2), in control of trafficking of some proteins to the vacuole lumen via the MVB, and in maintenance of vacuole size and acidity; activator of Fab1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_7.02999.02999.3	2.3981	0.1194	96.0%	1765.9215	1768.8784	21	3.748	40.4%	1	K.SIAKGLSDKLYEKR.K	3

YDR138W

1.6%

752

87829

5.3

HPR1 SGDID:S000002545, Chr IV from 730573-732831, Verified ORF, "Subunit of THO/TREX, related complexes that couple transcription elongation with mitotic recombination and elongation with mRNA metabolism and export, subunit of an RNA Pol II complex; regulates lifespan; similar to Top1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_5.02097.02097.3	2.5539	0.1478	99.6%	1434.7432	1434.5486	109	4.809	34.1%	1	K.RALEEEASFPER.E	3

Reverse_YBL022C

1.5%

1133

127112

5.6

PIM1 SGDID:S000000118, Chr II from 181278-177877, reverse complement, Verified ORF, "Mitochondrial ATP-dependent protease involved in intramitochondrial proteolysis; involved in degradation of misfolded proteins in mitochondria; required for bigenesis and maintenance of mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_71.24631.24631.2	1.7573	0.1202	95.3%	1819.7472	1821.0499	18	3.678	37.5%	1	K.AGS*RKAAVAKERLGGIR.L	2

YGR071C

1.5%

860

98109

5.9

YGR071C SGDID:S000003303, Chr VII from 634067-631485, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; deletion mutant has increased glycogen accumulation; green fluorescent protein (GFP)-fusion protein localizes to the nucleus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_41.14923.14923.2	1.6357	0.0902	91.0%	1480.8337	1478.6945	100	3.391	41.7%	1	R.SHLKTKHNISANK.N	2

YNL201C

1.5%

858

98053

5.1

PSY2 SGDID:S000005145, Chr XIV from 263204-260628, reverse complement, Uncharacterized ORF, "Nuclear protein of unknown function; deletion results in sensitivity to anticancer drugs oxaliplatin and cisplatin, but not mitomycin C; deletion is synthetically lethal with a chitin synthase (CHS1) null mutant"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_11.04640.04640.2	1.8483	0.0801	94.1%	1600.0007	1599.7094	246	3.365	41.7%	1	K.NNLANSCIQDFFR.I	2

Reverse_YMR162C

1656

188318

6.8

DNF3 SGDID:S000004772, Chr XIII from 583920-578950, reverse complement, Verified ORF, "Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the trans-Golgi, likely involved in protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_25.09529.09529.2	2.276	0.1382	99.0%	2540.9321	2541.8215	129	3.084	27.3%	1	K.KTLKTTINGGIS*DKSSQTKLSPR.K	2

Reverse_YJL042W

1398

155207

7.3

MHP1 SGDID:S000003578, Chr X from 361165-365361, Verified ORF, "Microtubule-associated protein involved in assembly and stabilization of microtubules; overproduction results in cell cycle arrest at G2 phase; similar to Drosophila protein MAP and to mammalian MAP4 proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_76.26506.26506.2	1.9857	0.0912	94.7%	2261.912	2259.406	129	3.284	31.6%	1	K.DLVDDYAADIANEEANNMFK.D	2

YGL207W

1035

118630

5.1

SPT16 SGDID:S000003175, Chr VII from 98973-102080, Verified ORF, "Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_2.00745.00745.3	2.0926	0.1372	94.0%	1579.8344	1578.7227	103	3.633	36.5%	1	K.KS*SPATKVPSKPDR.N	3 2

YKL181W

427

47048

5.7

PRS1 SGDID:S000001664, Chr XI from 107321-108604, Verified ORF, "5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, involved in nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_2.00528.00528.2	1.5332	0.0741	91.0%	849.3605	851.02094	20	2.869	80.0%	1	K.QCKMKR.H	2

Reverse_YDR283C

1.2%

1659

190192

6.4

GCN2 SGDID:S000002691, Chr IV from 1030043-1025064, reverse complement, Verified ORF, "Protein kinase, phosphorylates the alpha-subunit of translation initiation factor eIF2 (Sui2p) in response to starvation; activated by uncharged tRNAs and the Gcn1p-Gcn20p complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_52.18554.18554.2	2.252	0.1441	99.7%	2310.4163	2308.7502	91	4.079	28.9%	1	K.VEKFSRAFGVQSLMRSVLPR.Q	2

Reverse_YPR104C

1.2%

936

103502

5.9

FHL1 SGDID:S000006308, Chr XVI from 736431-733621, reverse complement, Verified ORF, "Putative transcriptional regulator with similarity to DNA-binding domain of Drosophila forkhead; required for rRNA processing"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_14.05400.05400.2	1.9292	0.1625	99.3%	1360.5654	1360.5106	20	4.074	55.0%	1	K.KPKAGTTIKKK.S	2

YHR099W

3744

433182

6.5

TRA1 SGDID:S000001141, Chr VIII from 302764-313998, Verified ORF, "Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with acidic activators (e.g., Gal4p) which leads to transcription activation; similar to human TRRAP, which is a cofactor for c-Myc mediated oncogenic transformation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_24.09145.09145.2	3.1901	0.2938	100.0%	2846.2922	2847.0327	34	5.021	26.1%	1	R.SGALPYSQSEYALWEDNWIQCAEK.L	2
*	Jamie_Mit_09102008_44.15893.15893.2	2.8264	0.3058	100.0%	2237.8762	2237.4785	7	5.061	40.6%	1	K.DHFTSLFTQFEDFWLFR.K	2

YJR066W

2470

281138

7.2

TOR1 SGDID:S000003827, Chr X from 559330-566742, Verified ORF, "PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that controls growth in response to nutrients by regulating translation, transcription, ribosome biogenesis, nutrient transport and autophagy; involved in meiosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_53.18719.18719.3	3.8131	0.2085	100.0%	2955.9543	2953.4688	106	4.407	24.0%	1	K.ESLMAILEAFALDPLIHWGFDLPPQK.L	3

YJL130C

2214

245123

5.9

URA2 SGDID:S000003666, Chr X from 172285-165641, reverse complement, Verified ORF, "Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_1.00041.00041.4	3.7195	0.0708	91.6%	2782.34	2784.093	184	3.812	24.3%	1	K.EEGIYTILINPNIATIQT*SKGLADK.V	4

Reverse_YKR031C

1683

195203

7.6

SPO14 SGDID:S000001739, Chr XI from 506037-500986, reverse complement, Verified ORF, "Phospholipase D, catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_63.21995.21995.3	2.7256	0.1264	97.7%	2177.3572	2178.3586	132	3.454	32.4%	1	R.ESNELTLLLLKSSINSKK.Q	3

YDR141C

1698

194686

5.7

DOP1 SGDID:S000002548, Chr IV from 739992-734896, reverse complement, Verified ORF, "Protein of unknown function, essential for viability, involved in establishing cellular polarity and morphogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_66.22962.22962.3	2.4344	0.1098	93.9%	2093.1404	2094.2866	16	3.467	32.4%	1	K.LVALISGKVSKTQFGEQK.R	3

YOR093C

1648

186906

8.5

YOR093C SGDID:S000005619, Chr XV from 502452-497506, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_7.03111.03111.2	1.7973	0.1301	97.3%	2012.6355	2013.1289	180	3.237	32.4%	1	R.RNTSLASSITS*LPNSIDR.R	2

Reverse_YDR369C

854

96364

8.2

XRS2 SGDID:S000002777, Chr IV from 1217570-1215006, reverse complement, Verified ORF, "Protein required for DNA repair; component of the Mre11 complex, which is involved in double strand breaks, meiotic recombination, telomere maintenance, and checkpoint signaling"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_30.11000.11000.2	1.6098	0.0978	93.9%	1040.0751	1040.0776	188	3.396	62.5%	1	K.NGESDFSKR.L	2

YER132C

0.9%

1753

195382

7.8

PMD1 SGDID:S000000934, Chr V from 430445-425184, reverse complement, Verified ORF, "Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Mds3p, for growth under alkaline conditions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_16.06313.06313.4	3.2493	0.2099	98.8%	1846.4905	1848.1556	66	4.764	33.3%	1	K.IPLEPLPPVPKAPS*RR.S	4

YCR011C

0.9%

1049

117231

5.2

ADP1 SGDID:S000000604, Chr III from 136870-133721, reverse complement, Verified ORF, "Putative ATP-dependent permease of the ABC transporter family of proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_21.08223.08223.2	1.5653	0.0919	92.0%	1041.9576	1044.2976	218	3.664	62.5%	1	K.IMSEVVPLR.V	2

Reverse_YMR219W

1658

187137

4.5

ESC1 SGDID:S000004832, Chr XIII from 707132-712108, Verified ORF, "Protein localized to the nuclear periphery, involved in telomeric silencing; interacts with PAD4-domain of Sir4p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_25.09509.09509.2	1.8239	0.1259	97.9%	1536.3121	1538.8052	127	3.538	41.7%	1	K.NARPTFTEKKKSM.-	2

Reverse_YMR190C

1447

163837

6.3

SGS1 SGDID:S000004802, Chr XIII from 645257-640914, reverse complement, Verified ORF, "Nucleolar DNA helicase of the RecQ family involved in maintenance of genome integrity, regulates chromosome synapsis and meiotic crossing over; has similarity to human BLM and WRN helicases implicated in Bloom and Werner syndromes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_5.02246.02246.3	2.5914	0.079	95.9%	1369.796	1370.5057	42	4.151	47.5%	1	K.QS*VSSKERKIK.P	3

Reverse_YBL066C

1148

127992

7.6

SEF1 SGDID:S000000162, Chr II from 100117-96671, reverse complement, Verified ORF, "Putative transcription factor, has homolog in Kluyveromyces lactis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_Mit_09102008_9.03760.03760.2	1.4342	0.1087	90.8%	1016.09216	1014.9817	21	2.917	62.5%	1	K.SDQALSS*AR.L	2

YOL100W