D splitted

DTASelect v2.0.28
/data/1/catclw/Projects/Jamie/Jamie_June2008/Alpha_09102008/splitted
/scratch/yates/SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta
SEQUEST 3.0 in SQT format.
--trypstat --cmax 4 --fp 0.1 -p 1
Jump to the summary table.

sequest.params modifications:

*	STY	80.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
0.0	Minimum peptide confidence
0.1	Peptide false positive rate
0.0	Minimum protein confidence
1.0	Protein false positive rate
1	Minimum charge state
16	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
false	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
true	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
1000	Minimum redundancy for low coverage loci
1	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

YIL002W-A

56.5%

7729

4.7

YIL002W-A SGDID:S000028835, Chr IX from 350298-350507, Uncharacterized ORF, "Identified by expression profiling and mass spectrometry"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_11.04393.04393.2	3.5373	0.1756	100.0%	2063.0205	2064.3125	1	6.046	52.9%	1	K.GGEEKISEVELKLDEMEK.K	2
*	Jamie_alpha_091208_11.04344.04344.3	4.5712	0.1636	100.0%	2064.0286	2064.3125	1	4.506	45.6%	1	K.GGEEKISEVELKLDEMEK.K	3
*	Jamie_alpha_091208_10.03839.03839.3	3.419	0.155	98.0%	2192.112	2192.4866	4	3.976	34.7%	1	K.GGEEKISEVELKLDEMEKK.M	3
*	Jamie_alpha_091208_10.03945.03945.2	3.1965	0.2461	100.0%	2193.8386	2192.4866	1	4.5	44.4%	1	K.GGEEKISEVELKLDEMEKK.M	2
*	Jamie_alpha_091208_7.03021.03021.2	3.0476	0.2609	100.0%	1691.8717	1691.9777	3	4.943	53.8%	1	K.ISEVELKLDEMEKK.M	2
*	Jamie_alpha_091208_15.05684.05684.3	4.4999	0.2941	100.0%	2466.2615	2468.7876	9	5.178	32.5%	2	K.KMDSLLVQLEDLHRDNNDLAK.S	3
*	Jamie_alpha_091208_15.05717.05717.2	3.7645	0.2206	100.0%	2468.2676	2468.7876	1	4.723	47.5%	1	K.KMDSLLVQLEDLHRDNNDLAK.S	2
*	Jamie_alpha_091208_16.06320.06320.2	3.4788	0.2216	100.0%	2340.1748	2340.6135	1	4.758	44.7%	1	K.MDSLLVQLEDLHRDNNDLAK.S	2
*	Jamie_alpha_091208_17.06334.06334.3	4.0614	0.1248	97.9%	2345.0764	2340.6135	1	4.063	42.1%	2	K.MDSLLVQLEDLHRDNNDLAK.S	3

YIL149C

50.5%

1679

195140

6.0

MLP2 SGDID:S000001411, Chr IX from 68067-63028, reverse complement, Verified ORF, "Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved in the Tel1p pathway that controls telomere length"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_22.08335.08335.4	4.5788	0.1967	100.0%	3374.765	3375.8035	4	4.094	23.5%	1	K.IAKFERSEEEVTKLNVLVDEIKSQYYSR.I	4
*	Jamie_alpha_091208_22.08227.08227.5	5.764	0.2433	100.0%	3375.7698	3375.8035	1	4.923	26.9%	1	K.IAKFERSEEEVTKLNVLVDEIKSQYYSR.I	5
*	Jamie_alpha_091208_22.08252.08252.3	4.5563	0.1692	100.0%	3377.7122	3375.8035	1	4.683	31.5%	1	K.IAKFERSEEEVTKLNVLVDEIKSQYYSR.I	3
*	Jamie_alpha_091208_6.02651.02651.2	2.6282	0.1438	99.0%	1453.7236	1453.5944	2	4.139	70.0%	1	R.VKEEYDIWQSR.D	2
*	Jamie_alpha_091208_8.03077.03077.4	5.2653	0.2841	100.0%	3249.2354	3254.4075	1	5.129	26.3%	1	R.VKEEYDIWQSRDQGNDSLNDDLNKENK.L	4
*	Jamie_alpha_091208_7.03020.03020.3	4.8736	0.2382	100.0%	3253.5288	3254.4075	3	4.565	26.9%	1	R.VKEEYDIWQSRDQGNDSLNDDLNKENK.L	3
*	Jamie_alpha_091208_12.04530.04530.3	4.5164	0.1125	98.0%	3635.7703	3636.9138	1	4.569	25.0%	1	R.VKEEYDIWQSRDQGNDSLNDDLNKENKLLR.R	3
*	Jamie_alpha_091208_11.04463.04463.4	3.8169	0.2373	100.0%	3635.7864	3636.9138	2	4.672	22.4%	1	R.VKEEYDIWQSRDQGNDSLNDDLNKENKLLR.R	4
*	Jamie_alpha_091208_7.02950.02950.2	3.6055	0.247	100.0%	2202.0723	2202.3428	1	4.969	50.0%	1	R.DQGNDSLNDDLNKENKLLR.R	2
*	Jamie_alpha_091208_6.02619.02619.2	3.6353	0.2836	100.0%	1906.0322	1906.146	1	5.924	56.7%	1	K.FLLNQNKQLSQSVEEK.V	2
*	Jamie_alpha_091208_10.03941.03941.3	2.776	0.1844	98.1%	1649.8676	1648.9122	1	4.269	40.4%	1	K.QLSQSVEEKVLEMK.N	3
*	Jamie_alpha_091208_8.03357.03357.4	3.8813	0.209	100.0%	2398.2341	2398.734	1	4.774	32.5%	1	K.NLKDTASVEKAEFSKEMTLQK.N	4
*	Jamie_alpha_091208_6.02408.02408.2	3.6761	0.356	100.0%	1539.7784	1537.6764	1	5.826	70.8%	1	R.SQLTSLEKDCSLR.A	2
*	Jamie_alpha_091208_15.05765.05765.4	5.0237	0.2604	100.0%	3682.8174	3682.9897	7	5.061	21.1%	1	R.AIEKNDDNSCRNPEHTDVIDELIDTKLRLEK.S	4
*	Jamie_alpha_091208_36.13040.13040.4	4.0486	0.1506	100.0%	3432.7957	3431.9133	1	4.519	24.7%	1	R.NQKFQLQNQLEDFILELEHKTPELISFK.E	4
*	Jamie_alpha_091208_35.12783.12783.3	5.1038	0.4441	100.0%	3434.834	3431.9133	95	6.313	21.3%	1	R.NQKFQLQNQLEDFILELEHKTPELISFK.E	3
*	Jamie_alpha_091208_37.13310.13310.5	4.3428	0.167	100.0%	3346.75	3346.8076	1	4.086	30.8%	1	K.FQLQNQLEDFILELEHKTPELISFKER.T	5
*	Jamie_alpha_091208_36.13012.13012.4	3.7633	0.1723	100.0%	3350.7708	3346.8076	1	3.512	27.6%	2	K.FQLQNQLEDFILELEHKTPELISFKER.T	4
*	Jamie_alpha_091208_1.00073.00073.2	2.0892	0.0679	93.1%	1240.7018	1241.4331	71	2.696	55.6%	2	R.TKSLEHELKR.S	2
*	Jamie_alpha_091208_22.08211.08211.3	4.54	0.3158	100.0%	3209.8074	3210.7393	8	6.22	21.4%	1	R.QVKLLLLNTSAIQETASPLSQDELISLRK.I	3
*	Jamie_alpha_091208_23.08657.08657.2	4.051	0.3389	100.0%	2854.3123	2855.3018	1	5.626	36.0%	2	K.LLLLNTSAIQETASPLSQDELISLRK.I	2
*	Jamie_alpha_091208_23.08640.08640.3	4.3298	0.3958	100.0%	2855.6033	2855.3018	35	5.563	24.0%	1	K.LLLLNTSAIQETASPLSQDELISLRK.I	3
*	Jamie_alpha_091208_24.09087.09087.2	3.5685	0.2905	100.0%	2935.5723	2935.3018	1	4.869	36.0%	1	K.LLLLNTSAIQETAS*PLSQDELISLRK.I	2
*	Jamie_alpha_091208_24.09057.09057.3	5.3341	0.3057	100.0%	2937.564	2935.3018	3	6.679	29.0%	1	K.LLLLNTSAIQETAS*PLSQDELISLRK.I	3
*	Jamie_alpha_091208_8.03358.03358.3	4.8287	0.1798	100.0%	2373.227	2374.6104	1	5.552	41.2%	1	R.KILESSNIVNENDSQAIITER.L	3
*	Jamie_alpha_091208_8.03221.03221.2	5.6676	0.4341	100.0%	2374.2297	2374.6104	1	8.497	60.0%	1	R.KILESSNIVNENDSQAIITER.L	2
*	Jamie_alpha_091208_10.03957.03957.3	4.9102	0.3374	100.0%	2246.136	2246.4363	1	5.669	44.7%	1	K.ILESSNIVNENDSQAIITER.L	3
*	Jamie_alpha_091208_10.04127.04127.2	4.4462	0.2674	100.0%	2247.1292	2246.4363	1	5.417	55.3%	1	K.ILESSNIVNENDSQAIITER.L	2
*	Jamie_alpha_091208_9.03434.03434.2	3.5338	0.3016	100.0%	1550.7986	1549.721	1	6.89	79.2%	1	R.LVEFSNVNELQEK.N	2
*	Jamie_alpha_091208_20.07492.07492.3	6.4788	0.3735	100.0%	2661.3823	2661.9812	1	6.577	42.9%	1	R.LVEFSNVNELQEKNVELLNCIR.I	3
*	Jamie_alpha_091208_12.04628.04628.1	3.4985	0.1704	100.0%	1343.7228	1343.5199	4	5.42	63.6%	1	K.DAIIELENINAK.M	1
*	Jamie_alpha_091208_14.05238.05238.4	5.0451	0.3263	100.0%	2875.898	2871.3071	1	5.718	31.2%	1	K.KIRELEAELSSTKVENSAIIQNLRK.E	4
*	Jamie_alpha_091208_11.04347.04347.3	5.1693	0.1783	100.0%	2476.357	2473.7861	1	5.422	41.7%	1	R.ELEAELSSTKVENSAIIQNLRK.E	3
*	Jamie_alpha_091208_9.03681.03681.3	3.8923	0.1835	100.0%	1872.0172	1870.1558	1	4.608	40.0%	1	K.KKTTLEDFENFKGLAK.E	3
*	Jamie_alpha_091208_11.04195.04195.3	4.1582	0.2499	100.0%	1741.9202	1741.9817	4	5.55	39.3%	1	K.KTTLEDFENFKGLAK.E	3
*	Jamie_alpha_091208_10.03810.03810.2	3.776	0.3401	100.0%	2155.1045	2156.4001	1	5.991	52.9%	1	K.TTLEDFENFKGLAKEKER.M	2
*	Jamie_alpha_091208_10.03801.03801.3	3.5851	0.2995	100.0%	2156.106	2156.4001	1	5.792	41.2%	1	K.TTLEDFENFKGLAKEKER.M	3
*	Jamie_alpha_091208_17.06534.06534.4	2.4229	0.1824	93.3%	2025.068	2026.3557	12	4.112	37.5%	1	R.MLEEAIDHLKAELEKQK.S	4
*	Jamie_alpha_091208_20.07499.07499.3	3.9312	0.1451	98.0%	2902.5842	2900.3423	1	4.598	32.3%	1	K.SLEYEISKLKKETASFIPTKESLTR.D	3
*	Jamie_alpha_091208_14.05415.05415.3	3.9252	0.25	100.0%	1915.0614	1916.185	5	5.008	36.7%	1	R.LRSDLQSKIQEIESIR.S	3
*	Jamie_alpha_091208_11.04177.04177.2	2.7177	0.1512	98.1%	1708.3922	1706.931	3	3.648	50.0%	1	K.SLLTELSNKETTIEK.L	2
*	Jamie_alpha_091208_32.11531.11531.4	6.6048	0.3727	100.0%	3240.0613	3234.6257	1	6.742	36.4%	1	K.SLLTELSNKETTIEKLSSEIENLDKELR.K	4
*	Jamie_alpha_091208_11.04356.04356.3	5.1158	0.313	100.0%	2507.0942	2502.7864	1	5.85	43.8%	1	K.FQYKFLDQNSDASTLEPTLRK.E	3
*	Jamie_alpha_091208_7.02971.02971.2	4.6432	0.366	100.0%	1937.9834	1936.1289	1	5.94	53.1%	2	K.FLDQNSDASTLEPTLRK.E	2
*	Jamie_alpha_091208_39.14110.14110.3	5.0744	0.2264	100.0%	4458.321	4458.964	1	5.732	24.3%	1	K.ELEQIQVQLKDANSQIQAYEEIISSNENALIELKNELAK.T	3
*	Jamie_alpha_091208_3.01426.01426.3	3.013	0.1242	91.8%	1967.0505	1967.2267	32	4.465	36.7%	1	K.TKENYDAKIELEKKEK.W	3
*	Jamie_alpha_091208_7.02841.02841.3	2.5233	0.2547	100.0%	1761.8778	1762.917	1	5.249	55.4%	1	K.SSLYSAQDLLDKHER.K	3
*	Jamie_alpha_091208_7.02752.02752.2	4.4752	0.3576	100.0%	1762.8793	1762.917	1	7.895	75.0%	1	K.SSLYSAQDLLDKHER.K	2
*	Jamie_alpha_091208_20.07450.07450.2	2.444	0.1701	98.1%	2167.0322	2167.3372	236	3.81	35.3%	1	K.ADYERELISNIEQTESLR.V	2
*	Jamie_alpha_091208_15.05890.05890.3	4.2739	0.2258	100.0%	2643.4443	2643.9163	5	5.947	27.2%	1	K.VDDTAANNGDKDHLKLVSLFSNLR.H	3
*	Jamie_alpha_091208_15.05599.05599.2	1.9364	0.0781	91.8%	1051.6322	1049.2584	6	3.508	68.8%	1	K.LVSLFSNLR.H	2
*	Jamie_alpha_091208_11.04432.04432.2	4.99	0.4456	100.0%	2490.3386	2490.819	1	7.469	50.0%	1	R.ELAFVKQKNDSLEKTINDLQR.T	2
*	Jamie_alpha_091208_22.08189.08189.3	5.2859	0.3182	100.0%	2850.4143	2848.1426	21	5.255	31.5%	1	R.TQTLSEKEYQCSAVIIDEFKDITK.E	3
*	Jamie_alpha_091208_9.03579.03579.3	3.1618	0.1249	93.2%	1955.1017	1955.2621	1	4.369	40.6%	1	K.EVTQVNILKENNAILQK.S	3
*	Jamie_alpha_091208_8.03380.03380.5	3.4534	0.1765	100.0%	3095.6365	3092.4392	184	3.88	22.9%	1	K.SLKNVTEKNREIYKQLNDRQEEISR.L	5
*	Jamie_alpha_091208_12.04762.04762.4	3.6551	0.1756	100.0%	3389.686	3393.776	19	4.212	21.4%	1	R.YQDLSQQQKDAQKKDIEKLTNEISDLKGK.L	4
*	Jamie_alpha_091208_21.07898.07898.4	5.569	0.2997	100.0%	5268.6963	5268.7607	8	5.198	15.2%	1	R.YQDLSQQQKDAQKKDIEKLTNEISDLKGKLSSAENANADLENKFNR.L	4
*	Jamie_alpha_091208_3.00921.00921.2	2.2486	0.1931	99.0%	1511.7922	1512.6627	1	4.873	62.5%	1	K.LKAHELQSEDVSR.D	2
*	Jamie_alpha_091208_20.07462.07462.6	3.7369	0.1562	100.0%	4620.3564	4621.112	1	3.716	20.8%	1	K.KLQETLNKSTSSEAEYSKDIETLKKEWLKEYEDETLRR.I	6
*	Jamie_alpha_091208_16.06268.06268.3	3.3173	0.1626	98.1%	2473.2559	2473.7393	2	3.969	28.8%	1	K.STSSEAEYSKDIETLKKEWLK.E	3
*	Jamie_alpha_091208_1.00050.00050.2	3.5055	0.116	100.0%	1360.7883	1358.5809	1	4.014	80.0%	2	R.IKEAEENLKKR.I	2
*	Jamie_alpha_091208_16.06025.06025.3	3.8675	0.168	100.0%	3346.5278	3347.487	1	4.816	24.1%	1	K.LKENAGSLTFLDNKGS*GEDAEEELWNSPSK.G	3
*	Jamie_alpha_091208_15.05919.05919.4	6.0339	0.3269	100.0%	4924.404	4924.3057	1	5.635	20.0%	1	K.LKENAGSLTFLDNKGSGEDAEEELWNSPSKGNSERPSAVAGFINQK.N	4
*	Jamie_alpha_091208_16.06136.06136.4	3.7477	0.1735	100.0%	5004.338	5004.3057	224	3.49	14.4%	1	K.LKENAGSLTFLDNKGSGEDAEEELWNS*PSKGNSERPSAVAGFINQK.N	4
*	Jamie_alpha_091208_8.03112.03112.2	3.721	0.2468	100.0%	1734.7379	1735.7582	1	5.176	70.0%	1	K.GSGEDAEEELWNSPSK.G	2
*	Jamie_alpha_091208_8.03292.03292.2	4.1133	0.1756	100.0%	1817.729	1815.7582	12	5.022	53.3%	2	K.GSGEDAEEELWNSPS*K.G	2
*	Jamie_alpha_091208_16.06234.06234.2	4.4342	0.4197	100.0%	2838.379	2839.0508	1	7.196	40.0%	1	S.NTSSLQSFQNPFTASQSNINTNAPLR.T	2
*	Jamie_alpha_091208_13.05115.05115.2	3.5996	0.3347	100.0%	2208.0767	2208.3953	1	5.905	47.4%	1	Q.SFQNPFTASQSNINTNAPLR.T	2
*	Jamie_alpha_091208_7.02913.02913.2	2.8547	0.1578	100.0%	1211.699	1212.4319	35	3.353	70.0%	1	R.TLNIQPEVAVK.A	2
*	Jamie_alpha_091208_12.04643.04643.2	4.208	0.2059	100.0%	2056.9722	2054.1777	1	5.614	52.6%	2	K.AAINFSNVTDLTNNSTDGAK.I	2
*	Jamie_alpha_091208_14.05397.05397.3	4.7442	0.3355	100.0%	3999.9932	4001.264	1	5.7	21.1%	1	K.AAINFSNVTDLTNNSTDGAKITEIGSTSKRPIESGTSSD.P	3
*	Jamie_alpha_091208_12.04534.04534.2	5.4687	0.5245	100.0%	1981.9436	1983.099	1	8.912	66.7%	1	A.AINFSNVTDLTNNSTDGAK.I	2
*	Jamie_alpha_091208_11.04190.04190.2	3.8092	0.4126	100.0%	1911.903	1912.0203	1	6.843	47.1%	1	A.INFSNVTDLTNNSTDGAK.I	2

YLR200W

49.1%

114

13284

4.7

YKE2 SGDID:S000004190, Chr XII from 549014-549358, Verified ORF, "Subunit of the heterohexameric Gim/prefoldin protein complex involved in the folding of alpha-tubulin, beta-tubulin, and actin"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_64.22269.22269.4	3.1855	0.2146	100.0%	6822.2163	6827.3887	6	4.155	13.0%	1	K.IVNEEFDQLEEDTPVYKLTGNVLLPVEQSEARTNVDKRLEFIETEITRCEKNIRDK.Q	4

YOR382W

41.8%

153

15302

8.4

FIT2 SGDID:S000005909, Chr XV from 1059527-1059988, Verified ORF, "Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_64.22380.22380.4	2.8544	0.4391	100.0%	6240.124	6244.4116	198	2.897	11.9%	1	S.EKSTTKTLTLTNGSGSSTNLYTKTVTQAVESSTSSSSSSSSSSSSASSSGAAPAAFQGASVGAL.A	4

YLR068W

26.5%

151

18190

10.3

FYV7 SGDID:S000004058, Chr XII from 271009-271464, Verified ORF, "Protein of unknown function, required for survival upon exposure to K1 killer toxin; involved in processing the 35S rRNA primary transcript to generate the 20S and 27SA2 pre-rRNA transcripts"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_47.16805.16805.4	4.1603	0.1303	100.0%	4720.7017	4720.338	288	3.459	16.7%	1	R.KEYLKALKDEGYAVPEKEPKTVAKESVRKIKEARAIEGKK.K	4

contaminant_KERATIN02

25.4%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_2.00799.00799.2	2.9116	0.3654	100.0%	1232.5951	1233.2833	2	7.077	53.3%	1	T.SGGGGGGGLGSGGSIR.S	2
*	Jamie_alpha_091208_15.05723.05723.2	4.8639	0.5495	100.0%	2705.1494	2706.7605	1	10.614	35.5%	1	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	2
*	Jamie_alpha_091208_25.09395.09395.4	4.6567	0.2125	100.0%	3454.7314	3455.8027	5	4.573	24.4%	1	R.LASYLDKVQALEEANNDLENKIQDWYDKK.G	4
*	Jamie_alpha_091208_17.06516.06516.3	4.9011	0.317	100.0%	3663.7458	3664.8784	1	5.463	28.2%	1	K.NRKDIENQYETQITQIEHEVSSSGQEVQSSAK.E	3
*	Jamie_alpha_091208_23.08518.08518.4	5.6589	0.2416	100.0%	4392.168	4391.7095	2	5.449	19.4%	1	K.NRKDIENQYETQITQIEHEVSSSGQEVQSSAKEVTQLR.H	4
*	Jamie_alpha_091208_16.06171.06171.2	5.3856	0.3562	100.0%	1837.9633	1839.0557	1	8.856	76.7%	1	R.HGVQELEIELQSQLSK.K	2
*	Jamie_alpha_091208_14.05313.05313.2	3.9762	0.391	100.0%	1969.3121	1967.2297	1	6.681	56.2%	1	R.HGVQELEIELQSQLSKK.A	2
*	Jamie_alpha_091208_1.00139.00139.2	3.9485	0.2722	100.0%	2094.9023	2093.05	1	7.361	38.0%	2	R.GSRGGSGGSYGGGGSGGGYGGGSGSR.G	2
*	Jamie_alpha_091208_2.00470.00470.2	5.1178	0.4158	100.0%	1792.7305	1792.7324	1	9.677	47.7%	1	R.GGSGGSYGGGGSGGGYGGGSGSR.G	2

U	YBL003C	1	1	22.0%	132	13989	10.7	HTA2 SGDID:S000000099, Chr II from 235795-235397, reverse complement, Verified ORF, "One of two nearly identical (see also HTA1) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p "
U	YDR225W	1	1	22.0%	132	13989	10.7	HTA1 SGDID:S000002633, Chr IV from 915524-915922, Verified ORF, "One of two nearly identical (see also HTA2) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_61.21476.21476.2	3.1053	0.3121	100.0%	2947.4758	2947.4014	1	5.774	33.9%	1	R.IGSGAPVYLTAVLEYLAAEILELAGNAAR.D	2

YPL037C

19.1%

157

17020

6.5

EGD1 SGDID:S000005958, Chr XVI from 481898-481425, reverse complement, Verified ORF, "Subunit beta1 of the nascent polypeptide-associated complex (NAC) involved in protein targeting, associated with cytoplasmic ribosomes; enhances DNA binding of the Gal4p activator; homolog of human BTF3b"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_58.20164.20164.2	2.7501	0.2186	100.0%	3227.331	3225.7278	3	5.145	27.6%	1	K.NLQDLFPGIISQLGPEAIQALSQLAAQMEK.H	2

U	contaminant_NRL_1IKFL	2	2	18.7%	214	23527	6.5	owl\|\| Immunoglobulin igg1-kappa antibody fragment fab complexed With...
U	contaminant_S68241	2	2	18.3%	218	23846	6.7	owl\|S68241\| immunoglobulin light chain (Mab13-1) - mouse (fragment)

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_32.11717.11717.3	3.9115	0.1508	97.9%	4301.1846	4299.793	1	4.244	18.6%	1	L.RADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK.W	3
	Jamie_alpha_091208_39.13842.13842.2	2.5871	0.1797	98.9%	3573.7322	3573.947	2	4.048	21.2%	1	R.ADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK.D	2

Reverse_YJL122W

16.6%

175

19287

10.0

YJL122W SGDID:S000003658, Chr X from 189636-190163, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_72.24914.24914.4	3.1952	0.1459	90.6%	3182.2546	3183.2842	180	3.506	22.6%	1	K.SLTRTTISAPSSSANQLTVATSNQSENKK.N	4

Reverse_YBR164C

16.4%

183

20434

4.9

ARL1 SGDID:S000000368, Chr II from 568421-567870, reverse complement, Verified ORF, "Soluble GTPase with a role in regulation of membrane traffic; regulates potassium influx; G protein of the Ras superfamily, similar to ADP-ribosylation factor"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_19.07142.07142.2	1.569	0.1863	94.8%	3367.2922	3364.8591	44	3.47	22.4%	1	K.GAGDLGLILIRLEKNSGWLKDFMSS*FINGM.-	2

YDL229W

16.0%

613

66602

5.4

SSB1 SGDID:S000002388, Chr IV from 44066-45907, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; interacts with the phosphatase subunit Reg1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_12.04601.04601.2	3.0865	0.3335	100.0%	1395.755	1395.6011	12	5.717	63.6%	1	R.ARFEDLNAALFK.S	2 2
	Jamie_alpha_091208_9.03487.03487.3	2.7301	0.2487	100.0%	1788.9852	1789.0391	1	4.99	39.1%	1	K.ISKSQIDEVVLVGGSTR.I	3 3
	Jamie_alpha_091208_14.05342.05342.2	2.3441	0.1788	99.0%	1542.0809	1540.7563	7	3.93	54.2%	1	K.LLSDFFDGKQLEK.S	2 2
*	Jamie_alpha_091208_12.04563.04563.2	4.7199	0.3261	100.0%	2465.1306	2464.6167	1	6.914	50.0%	1	R.TFTTCADNQTTVQFPVYQGER.V	2
	Jamie_alpha_091208_13.05112.05112.2	3.6645	0.1526	100.0%	1782.8943	1780.9818	1	4.041	60.7%	1	R.VNCKENTLLGEFDLK.N	2 2
	Jamie_alpha_091208_11.04470.04470.2	2.6148	0.2048	100.0%	2133.5122	2135.336	74	4.66	31.6%	1	K.SSNITISNAVGRLSSEEIEK.M	2 2

Similarities: YNL209W(5:1)

YNL209W

16.0%

613

66595

5.5

SSB2 SGDID:S000005153, Chr XIV from 252060-253901, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; homolog of SSB1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_12.04601.04601.2	3.0865	0.3335	100.0%	1395.755	1395.6011	12	5.717	63.6%	1	R.ARFEDLNAALFK.S	2 2
	Jamie_alpha_091208_9.03487.03487.3	2.7301	0.2487	100.0%	1788.9852	1789.0391	1	4.99	39.1%	1	K.ISKSQIDEVVLVGGSTR.I	3 3
	Jamie_alpha_091208_14.05342.05342.2	2.3441	0.1788	99.0%	1542.0809	1540.7563	7	3.93	54.2%	1	K.LLSDFFDGKQLEK.S	2 2
*	Jamie_alpha_091208_13.04884.04884.2	4.3495	0.3381	100.0%	2419.15	2419.6096	1	6.479	42.5%	1	R.TFTTVSDNQTTVQFPVYQGER.V	2
	Jamie_alpha_091208_13.05112.05112.2	3.6645	0.1526	100.0%	1782.8943	1780.9818	1	4.041	60.7%	1	R.VNCKENTLLGEFDLK.N	2 2
	Jamie_alpha_091208_11.04470.04470.2	2.6148	0.2048	100.0%	2133.5122	2135.336	74	4.66	31.6%	1	K.SSNITISNAVGRLSSEEIEK.M	2 2

Similarities: YDL229W(5:1)

contaminant_INT-STD1

15.5%

607

69271

6.1

BSA

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_1.00047.00047.2	1.9054	0.1686	96.6%	1193.6044	1194.2925	10	3.842	66.7%	1	R.DTHKSEIAHR.F	2
*	Jamie_alpha_091208_9.03709.03709.3	4.092	0.3481	100.0%	2867.434	2866.009	1	6.115	29.2%	1	K.TCVADESHAGCEKSLHTLFGDELCK.V	3
*	Jamie_alpha_091208_10.04111.04111.2	3.5607	0.3841	100.0%	1422.7028	1420.5713	1	6.55	77.3%	1	K.SLHTLFGDELCK.V	2
*	Jamie_alpha_091208_22.08373.08373.2	3.9326	0.4022	100.0%	1691.8646	1693.9781	1	6.564	71.4%	2	K.AEFVEVTKLVTDLTK.V	2
*	Jamie_alpha_091208_9.03753.03753.3	4.0125	0.0951	100.0%	1439.8107	1440.6884	1	4.92	70.5%	2	R.RHPEYAVSVLLR.L	3
*	Jamie_alpha_091208_6.02627.02627.2	1.8142	0.1856	97.5%	1305.0007	1306.5046	4	5.06	65.0%	1	K.HLVDEPQNLIK.Q	2
*	Jamie_alpha_091208_24.08950.08950.3	5.6254	0.4119	100.0%	3818.9194	3818.2468	1	6.766	26.6%	1	K.HLVDEPQNLIKQNCDQFEKLGEYGFQNALIVR.Y	3
*	Jamie_alpha_091208_15.05615.05615.2	3.201	0.2167	100.0%	1479.7987	1480.7068	2	5.003	62.5%	1	K.LGEYGFQNALIVR.Y	2

YPL131W

15.2%

297

33715

6.8

RPL5 SGDID:S000006052, Chr XVI from 303120-304013, Verified ORF, "Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_18.07050.07050.2	3.9702	0.3166	100.0%	2581.216	2580.7644	1	6.019	38.6%	1	K.GVEEVEGEYELTEAVEDGPRPFK.V	2
*	Jamie_alpha_091208_20.07608.07608.2	3.2126	0.2815	100.0%	2592.9321	2591.7217	6	4.721	33.3%	1	R.SYIFGGHVSQYMEELADDDEER.F	2

YDL130W

15.1%

106

10668

4.0

RPP1B SGDID:S000002288, Chr IV from 229906-230019,230321-230527, Verified ORF, "Ribosomal protein P1 beta, component of the ribosomal stalk, which is involved in interaction of translational elongation factors with ribosome; accumulation is regulated by phosphorylation and interaction with the P2 stalk component"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_13.05011.05011.2	4.2554	0.4284	100.0%	1664.8102	1664.815	1	7.445	63.3%	1	K.AAGANVDNVWADVYAK.A	2

YAL038W

15.0%

500

54545

7.7

CDC19 SGDID:S000000036, Chr I from 71787-73289, Verified ORF, "Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_11.04484.04484.2	3.2792	0.1609	100.0%	2186.1777	2186.4705	2	4.657	44.7%	1	R.TANDVLTIREVLGEQGKDVK.I	2
*	Jamie_alpha_091208_15.05851.05851.2	2.7297	0.1216	98.2%	1878.0922	1878.2194	12	3.808	41.2%	1	R.GDLGIEIPAPEVLAVQKK.L	2
*	Jamie_alpha_091208_25.09235.09235.3	4.2154	0.2795	100.0%	2571.8044	2570.8174	1	5.219	38.1%	1	R.GVFPFVFEKEPVSDWTDDVEAR.I	3
*	Jamie_alpha_091208_25.09396.09396.2	4.9956	0.3773	100.0%	2572.2214	2570.8174	1	6.592	54.8%	1	R.GVFPFVFEKEPVSDWTDDVEAR.I	2
*	Jamie_alpha_091208_8.03336.03336.2	2.4446	0.3528	100.0%	1520.6727	1519.5646	22	5.703	50.0%	1	K.EPVSDWTDDVEAR.I	2
*	Jamie_alpha_091208_13.05145.05145.2	2.4461	0.1076	95.3%	1709.2122	1708.0538	1	3.291	57.1%	1	R.INFGIEKAKEFGILK.K	2

YGR282C

15.0%

313

34119

4.5

BGL2 SGDID:S000003514, Chr VII from 1058730-1057789, reverse complement, Verified ORF, "Endo-beta-1,3-glucanase, major protein of the cell wall, involved in cell wall maintenance"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_15.05667.05667.2	2.7825	0.2624	100.0%	1162.9722	1161.3867	1	5.017	75.0%	1	A.IGELAFNLGVK.N	2
*	Jamie_alpha_091208_10.03915.03915.2	4.3971	0.5178	100.0%	1951.977	1951.1528	1	8.81	55.9%	1	A.IGELAFNLGVKNNDGTCK.S	2
*	Jamie_alpha_091208_8.03330.03330.2	4.0265	0.3542	100.0%	2275.0112	2275.354	1	6.045	52.6%	1	K.NNDGTCKSTSDYETELQALK.S	2
*	Jamie_alpha_091208_7.03009.03009.3	3.8491	0.33	100.0%	1788.912	1789.9402	6	5.735	35.0%	1	R.NDLTASQLSDKINDVR.S	3

contaminant_KERATIN13

14.5%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_15.05888.05888.4	3.9513	0.2895	100.0%	2423.2874	2423.7341	1	5.647	35.1%	1	R.EREQIKSLNNQFASFIDKVR.F	4
*	Jamie_alpha_091208_16.06223.06223.3	2.1013	0.2019	92.3%	1638.8582	1639.8516	69	4.885	42.3%	1	K.SLNNQFASFIDKVR.F	3
*	Jamie_alpha_091208_19.07294.07294.3	5.9232	0.4135	100.0%	2935.5054	2934.2786	1	7.393	34.8%	1	R.FLEQQNQVLQTKWELLQQVDTSTR.T	3
*	Jamie_alpha_091208_25.09273.09273.2	3.4827	0.3061	100.0%	1996.0149	1995.2017	2	5.873	50.0%	1	R.THNLEPYFESFINNLR.R	2
*	Jamie_alpha_091208_7.02854.02854.2	2.2484	0.1719	98.1%	1267.6635	1266.3934	11	3.939	65.0%	1	R.TNAENEFVTIK.K	2
*	Jamie_alpha_091208_9.03499.03499.2	4.833	0.3341	100.0%	2502.2546	2502.7405	1	6.931	52.4%	1	K.SKAEAESLYQSKYEELQITAGR.H	2

YER011W

14.2%

254

24906

4.8

TIR1 SGDID:S000000813, Chr V from 175247-176011, Verified ORF, "Cell wall mannoprotein of the Srp1p/Tip1p family of serine-alanine-rich proteins; expression is downregulated at acidic pH and induced by cold shock and anaerobiosis; abundance is increased in cells cultured without shaking"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_69.23891.23891.3	3.1912	0.1586	94.6%	3450.718	3449.3586	38	3.713	17.9%	1	K.SSSAAPSSSEAKSSSAAPSSSEAKSSSAAPSSSEAK.S	3

YDR432W

12.6%

414

45407

5.5

NPL3 SGDID:S000002840, Chr IV from 1328773-1330017, Verified ORF, "RNA-binding protein that carries poly(A)+ mRNA from the nucleus into the cytoplasm; phosphorylation by Sky1p in the cytoplasm may promote release of mRNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_13.05109.05109.2	2.7074	0.0837	95.3%	1901.915	1903.068	11	4.349	46.7%	1	K.NLPEGCSWQDLKDLAR.E	2
*	Jamie_alpha_091208_9.03454.03454.2	2.5265	0.1643	99.0%	1585.7532	1585.6677	8	4.584	53.8%	1	R.ENSLETTFSSVNTR.D	2
*	Jamie_alpha_091208_37.13440.13440.2	2.9629	0.1414	98.9%	2440.1777	2438.6501	20	4.338	31.0%	1	R.DFDGTGALEFPSEEILVEALER.L	2

contaminant_KERATIN03

12.5%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_35.12786.12786.3	4.2964	0.1893	100.0%	3053.6465	3054.4277	137	4.822	23.1%	1	K.TIDDLKNQILNLTTDNANILLQIDNAR.L	3
*	Jamie_alpha_091208_9.03630.03630.2	2.074	0.1243	96.7%	1109.494	1110.1681	16	4.66	62.5%	1	K.DAEAWFNEK.S	2
*	Jamie_alpha_091208_18.07048.07048.4	4.8904	0.2563	100.0%	3198.6401	3198.5115	2	5.473	29.5%	1	K.SKELTTEIDNNIEQISSYKSEITELRR.N	4
*	Jamie_alpha_091208_6.02575.02575.2	2.8384	0.1376	98.9%	1434.7665	1435.623	1	4.693	75.0%	1	K.IRLENEIQTYR.S	2

YOL127W

12.0%

142

15758

10.1

RPL25 SGDID:S000005487, Chr XV from 80347-80359,80774-81189, Verified ORF, "Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins; binds to 26S rRNA via a conserved C-terminal motif"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_25.09307.09307.2	2.169	0.1223	95.5%	1896.9253	1898.1228	168	3.591	34.4%	1	R.LTADYDALDIANRIGYI.-	2

YOR369C

11.9%

143

15472

4.7

RPS12 SGDID:S000005896, Chr XV from 1028621-1028190, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; has similarity to rat ribosomal protein S12"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_9.03643.03643.2	3.7984	0.1839	100.0%	1852.0322	1850.1655	1	4.689	62.5%	1	K.LVEGLANDPENKVPLIK.V	2

U	YGR254W	3	3	10.8%	437	46816	6.6	ENO1 SGDID:S000003486, Chr VII from 1000932-1002245, Verified ORF, "Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose"
U	YHR174W	3	3	10.8%	437	46914	6.0	ENO2 SGDID:S000001217, Chr VIII from 451327-452640, Verified ORF, "Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
Jamie_alpha_091208_11.04456.04456.3	3.9364	0.1164	98.2%	2583.3237	2584.8455	1	3.63	29.5%	1	R.SVYDSRGNPTVEVELTTEKGVFR.S	3
Jamie_alpha_091208_32.11754.11754.3	6.1635	0.438	100.0%	2988.4177	2986.269	1	7.483	37.0%	1	K.RYPIVSIEDPFAEDDWEAWSHFFK.T	3
Jamie_alpha_091208_37.13161.13161.3	5.3652	0.4558	100.0%	2831.2986	2830.0815	1	7.837	47.7%	1	R.YPIVSIEDPFAEDDWEAWSHFFK.T	3

Reverse_YDR494W

9.7%

361

41216

10.0

RSM28 SGDID:S000002902, Chr IV from 1436920-1438005, Verified ORF, "Mitochondrial ribosomal protein of the small subunit; genetic interactions suggest a possible role in promoting translation initiation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_39.13993.13993.3	3.2827	0.1551	94.5%	3938.399	3941.174	57	4.243	19.1%	1	K.DLKLANSSAKATAEQARALISNIFDETVSTSYHAR.S	3

U	YAL005C	3	4	9.3%	642	69768	5.1	SSA1 SGDID:S000000004, Chr I from 141433-139505, reverse complement, Verified ORF, "ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall"
U	YLL024C	3	4	9.4%	639	69470	5.1	SSA2 SGDID:S000003947, Chr XII from 97484-95565, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
Jamie_alpha_091208_12.04703.04703.2	3.9625	0.373	100.0%	1897.9922	1896.0667	1	6.181	53.1%	1	K.VNDAVVTVPAYFNDSQR.Q	2
Jamie_alpha_091208_15.05617.05617.2	3.3387	0.2805	100.0%	1529.7126	1527.6862	2	5.448	72.7%	2	R.ARFEELCADLFR.S	2
Jamie_alpha_091208_21.07921.07921.3	3.2983	0.1211	92.2%	3373.0444	3369.8406	21	3.641	21.7%	1	R.STLDPVEKVLRDAKLDKSQVDEIVLVGGSTR.I	3

Reverse_YHR089C

9.3%

205

21480

11.5

GAR1 SGDID:S000001131, Chr VIII from 283300-282683, reverse complement, Verified ORF, "Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and cleavage of the 18S pre-rRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_58.20168.20168.2	2.0881	0.1678	96.6%	1845.9305	1845.133	116	4.258	33.3%	1	R.GMSAGGRGGPAGSRKKKNK.P	2

YOR257W

9.3%

161

18751

4.6

CDC31 SGDID:S000005783, Chr XV from 811006-811491, Verified ORF, "Component of the spindle pole body (SPB) half-bridge, required for SPB duplication in mitosis and meiosis II; homolog of mammalian centrin; interacts with Kar1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_7.02986.02986.3	3.0839	0.3184	100.0%	1702.92	1703.8871	14	5.736	42.9%	1	R.VAKELGETLTDEELR.A	3

contaminant_gi|135017|sp|P07518|SUBT_BAC

9.1%

275

27656

6.8

SUBTILISIN (ALKALINE MESENTERICOPEPTIDASE)

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_3.01385.01385.3	3.2578	0.2822	100.0%	1529.7734	1530.6805	2	6.201	44.6%	2	K.APALHSQGYTGSNVK.V	3
*	Jamie_alpha_091208_3.01316.01316.2	3.2913	0.398	100.0%	1532.7722	1530.6805	1	6.622	60.7%	1	K.APALHSQGYTGSNVK.V	2
*	Jamie_alpha_091208_8.03157.03157.2	2.1418	0.0492	90.2%	984.5461	985.12823	356	3.596	55.6%	1	K.GLINVQAAAQ.-	2

YAL012W

8.9%

394

42542

6.5

CYS3 SGDID:S000000010, Chr I from 130802-131986, Verified ORF, "Cystathionine gamma-lyase, catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine;"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_11.04431.04431.2	2.0931	0.1996	99.0%	1207.5953	1208.3135	13	4.314	65.0%	1	R.EASGVFDDLVR.I	2
*	Jamie_alpha_091208_37.13343.13343.3	3.7437	0.1949	100.0%	2633.3823	2630.9092	20	4.665	30.4%	1	R.ISVGIEDTDDLLEDIKQALKQATN.-	3

YKL152C

8.9%

247

27609

8.8

GPM1 SGDID:S000001635, Chr XI from 164390-163647, reverse complement, Verified ORF, "Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_12.04852.04852.2	2.7469	0.155	99.0%	2374.152	2374.5688	3	5.045	38.1%	1	R.SFDVPPPPIDASSPFSQKGDER.Y	2

U	YGR192C	2	2	8.7%	332	35747	7.0	TDH3 SGDID:S000003424, Chr VII from 883815-882817, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "
U	YJR009C	2	2	8.7%	332	35847	7.0	TDH2 SGDID:S000003769, Chr X from 454595-453597, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "
U	YJL052W	2	2	8.7%	332	35750	8.3	TDH1 SGDID:S000003588, Chr X from 338187-339185, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_7.02692.02692.2	2.8638	0.1964	100.0%	1822.9785	1821.0131	1	4.366	59.4%	1	K.IVSNASCTTNCLAPLAK.V	2
	Jamie_alpha_091208_6.02395.02395.2	2.2788	0.1131	96.0%	1238.7446	1239.5009	10	3.484	59.1%	1	K.AVGKVLPELQGK.L	2

YCL043C

7.9%

522

58227

4.5

PDI1 SGDID:S000000548, Chr III from 50221-48653, reverse complement, Verified ORF, "Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen, essential for the formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_21.08084.08084.3	3.7301	0.0848	91.7%	2031.1567	2031.4001	39	4.251	33.3%	1	K.AIESLVKDFLKGDASPIVK.S	3
*	Jamie_alpha_091208_17.06690.06690.2	4.5994	0.394	100.0%	2343.9722	2343.33	1	7.103	57.1%	1	K.AAEEADADAELADEEDAIHDEL.-	2

YLR407W

7.9%

229

25687

8.6

YLR407W SGDID:S000004399, Chr XII from 932965-933654, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_69.23864.23864.2	2.2543	0.0699	91.8%	2174.4756	2176.536	168	3.742	32.4%	1	K.LAQKSKAPFCNAEKIWKR.R	2

YKL096W

7.9%

239

24268

4.7

CWP1 SGDID:S000001579, Chr XI from 260776-261495, Verified ORF, "Cell wall mannoprotein, linked to a beta-1,3- and beta-1,6-glucan heteropolymer through a phosphodiester bond; involved in cell wall organization"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_13.04955.04955.2	4.2326	0.4049	100.0%	2033.9722	2032.214	1	7.934	55.6%	1	K.SSSGFYAIKDGSSYIFSSK.Q	2

YLR044C

7.8%

563

61495

6.2

PDC1 SGDID:S000004034, Chr XII from 234082-232391, reverse complement, Verified ORF, "Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde; subject to glucose-, ethanol-, and autoregulation; involved in amino acid catabolism"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_10.03949.03949.2	4.8712	0.4524	100.0%	2000.9692	1999.1063	1	8.992	52.8%	1	R.WAGNANELNAAYAADGYAR.I	2 2
*	Jamie_alpha_091208_21.07909.07909.2	3.5628	0.403	100.0%	2742.508	2744.2065	1	7.18	39.6%	1	R.TTYVTQRPVYLGLPANLVDLNVPAK.L	2

Similarities: YLR134W(1:1)

YPR148C

7.8%

435

49279

4.8

YPR148C SGDID:S000006352, Chr XVI from 828136-826829, reverse complement, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_11.04248.04248.3	4.846	0.3032	100.0%	3865.5842	3865.7427	1	4.82	22.7%	1	K.TAQTTEAQGADHNEEDEEDEEDEEDDEDLSNLIK.V	3

YGR234W

7.8%

399

44646

6.3

YHB1 SGDID:S000003466, Chr VII from 959908-961107, Verified ORF, "Nitric oxide oxidoreductase, flavohemoglobin involved in nitric oxide detoxification; plays a role in the oxidative and nitrosative stress responses"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_59.20602.20602.2	4.3496	0.4561	100.0%	3348.703	3349.762	1	8.012	31.7%	1	K.EVLGDAATPEIINAWGEAYQAIADIFITVEK.K	2

YEL034W

7.6%

157

17114

5.0

HYP2 SGDID:S000000760, Chr V from 85676-86149, Verified ORF, "Translation initiation factor eIF-5A, promotes formation of the first peptide bond; similar to and functionally redundant with Anb1p; undergoes an essential hypusination modification; expressed under aerobic conditions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_16.06224.06224.2	2.4199	0.1821	98.9%	1312.7621	1313.5828	14	4.698	54.5%	1	K.VHLVAIDIFTGK.K	2

YLR134W

7.5%

563

61912

6.4

PDC5 SGDID:S000004124, Chr XII from 410724-412415, Verified ORF, "Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde, regulation is glucose- and ethanol-dependent, repressed by thiamine, involved in amino acid catabolism"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_10.03949.03949.2	4.8712	0.4524	100.0%	2000.9692	1999.1063	1	8.992	52.8%	1	R.WAGNANELNAAYAADGYAR.I	2 2
*	Jamie_alpha_091208_39.13948.13948.2	2.6389	0.3461	100.0%	2325.465	2322.6262	1	5.847	34.1%	1	A.GSYAEHVGVLHVVGVPSISSQAK.Q	2

Similarities: YLR044C(1:1)

U	YHR203C	1	1	7.3%	261	29410	10.1	RPS4B SGDID:S000001246, Chr VIII from 505530-505517,505247-504476, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; identical to Rps4Bp and has similarity to rat S4 ribosomal protein"
U	YJR145C	1	1	7.3%	261	29410	10.1	RPS4A SGDID:S000003906, Chr X from 702983-702970,702713-701942, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; identical to Rps4Bp and has similarity to rat S4 ribosomal protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_16.06325.06325.2	2.908	0.0064	90.0%	2120.152	2117.496	2	3.147	41.7%	1	R.LNNVFVIGEQGKPYISLPK.G	2

YER091C

7.2%

767

85860

6.5

MET6 SGDID:S000000893, Chr V from 342163-339860, reverse complement, Verified ORF, "Cobalamin-independent methionine synthase, involved in amino acid biosynthesis; requires a minimum of two glutamates on the methyltetrahydrofolate substrate, similar to bacterial metE homologs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_52.18445.18445.2	3.1831	0.2738	100.0%	3513.2764	3513.9258	14	5.485	23.3%	1	K.EAGVDIIPSNDFSFYDQVLDLSLLFNVIPDR.Y	2
*	Jamie_alpha_091208_59.20664.20664.2	2.2537	0.1132	95.5%	2742.8657	2744.195	84	3.435	26.1%	1	K.DSLDLEPLSLLEQLLPLYTEILSK.L	2

YBR127C

7.2%

517

57749

5.1

VMA2 SGDID:S000000331, Chr II from 492816-491263, reverse complement, Verified ORF, "Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_18.06892.06892.2	2.5721	0.1622	98.1%	1930.0686	1931.2395	128	3.961	35.3%	1	R.LNYNTVSGVNGPLVILEK.V	2
*	Jamie_alpha_091208_20.07616.07616.2	3.774	0.2831	100.0%	2157.2212	2155.3716	1	5.981	50.0%	1	K.VFAEDYLDINGSPINPYAR.I	2

YMR131C

7.2%

511

57261

4.6

RRB1 SGDID:S000004738, Chr XIII from 534697-533162, reverse complement, Verified ORF, "Essential nuclear protein involved in early steps of ribosome biogenesis; physically interacts with the ribosomal protein Rpl3p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_12.04666.04666.4	4.4676	0.2639	100.0%	4287.9365	4289.3447	1	4.507	20.8%	1	K.TLLKDDNEGEDDEEDDEDDVDPVIENENIPLRDTTNR.L	4

YLR196W

7.1%

576

63803

4.6

PWP1 SGDID:S000004186, Chr XII from 543970-545700, Verified ORF, "Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_20.07571.07571.3	3.0675	0.2227	100.0%	4754.1245	4756.004	108	4.018	15.6%	1	K.YWSAMAGEEIETVTFASENIILCGTDS*GNVYSFDIRNNENR.K	3

U	YGL031C	1	1	7.1%	155	17614	11.3	RPL24A SGDID:S000002999, Chr VII from 437939-437472, reverse complement, Verified ORF, "Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Bp and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate"
U	YGR148C	1	1	7.1%	155	17547	11.4	RPL24B SGDID:S000003380, Chr VII from 787784-787317, reverse complement, Verified ORF, "Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Ap and has similarity to rat L24 ribosomal protein; not essential for translation but may be required for normal translation rate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_2.00774.00774.2	2.1115	0.1216	95.3%	1136.5739	1136.2963	5	4.348	65.0%	1	K.GAFQKVAATSR.-	2

U	YDR385W	3	3	7.0%	842	93289	6.3	EFT2 SGDID:S000002793, Chr IV from 1243220-1245748, Verified ORF, "Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin"
U	YOR133W	3	3	7.0%	842	93289	6.3	EFT1 SGDID:S000005659, Chr XV from 575098-577626, Verified ORF, "Elongation factor 2 (EF-2), also encoded by EFT2; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
Jamie_alpha_091208_39.13870.13870.2	2.8399	0.231	100.0%	2745.4373	2745.1543	1	5.233	35.4%	1	R.FVEPIDDCPAGNIIGLVGIDQFLLK.T	2
Jamie_alpha_091208_7.03044.03044.2	2.7915	0.2505	100.0%	1973.9521	1973.2365	95	4.819	35.3%	1	R.GQVVSEEQRPGTPLFTVK.A	2
Jamie_alpha_091208_19.07181.07181.2	2.7214	0.29	100.0%	1799.8866	1801.0087	8	5.54	43.3%	1	K.AYLPVNESFGFTGELR.Q	2

YOL086C

6.9%

348

36849

6.7

ADH1 SGDID:S000005446, Chr XV from 160593-159547, reverse complement, Verified ORF, "Alcohol dehydrogenase, fermentative isozyme active as homo- or heterotetramers; required for the reduction of acetaldehyde to ethanol, the last step in the glycolytic pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_11.04378.04378.2	2.8338	0.2793	100.0%	2312.1826	2313.4863	4	4.93	28.3%	1	K.ATDGGAHGVINVSVSEAAIEASTR.Y	2

YPL229W

6.8%

206

23260

6.3

YPL229W SGDID:S000006150, Chr XVI from 117067-117687, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_7.02851.02851.1	1.3139	0.2507	100.0%	1517.73	1516.6049	2	4.472	38.5%	1	Q.PISPPLFLVGAGTS.E	1

Reverse_YNL053W

6.7%

489

54218

7.2

MSG5 SGDID:S000004998, Chr XIV from 529943-531412, Verified ORF, "Dual-specificity protein phosphatase required for maintenance of a low level of signaling through the cell integrity pathway; regulates and is regulated by Slt2p; also required for adaptive response to pheromone"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_37.13254.13254.3	3.1887	0.1507	93.1%	3896.7244	3896.349	199	3.976	18.0%	1	R.MIYAVILSASRSVGCQCHVLIKKGQSHATHIIR.T	3

YDR372C

6.7%

345

39287

5.1

VPS74 SGDID:S000002780, Chr IV from 1222139-1221102, reverse complement, Verified ORF, "Non-essential protein of unknown function involved in vacuolar protein sorting; belongs to a family of cytosolic Golgi-associated proteins suggesting that it may play a role in secretion; also detected in the nucleus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_52.18420.18420.2	2.725	0.0703	95.6%	2661.7122	2658.9678	72	3.482	27.3%	1	K.NDEPLSISNWIDLLSGETWNLLK.I	2

YAL025C

6.5%

306

35694

5.3

MAK16 SGDID:S000000023, Chr I from 101146-100226, reverse complement, Verified ORF, "Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for normal concentration of free 60S ribosomal subunits; required for maintenance of M1 satellite double-stranded RNA of the L-A virus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_12.04735.04735.2	3.1056	0.1068	98.2%	2403.0642	2403.4749	35	3.395	34.2%	1	K.VEIEYEEEHEVQNAEQEVAQ.-	2

YPL124W

6.3%

253

29280

9.5

SPC29 SGDID:S000006045, Chr XVI from 316754-317515, Verified ORF, "Inner plaque spindle pole body (SPB) component, links the central plaque component Spc42p to the inner plaque component Spc110p; required for SPB duplication"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_7.02960.02960.2	4.4747	0.3115	100.0%	1925.8889	1923.9855	1	6.154	66.7%	2	R.SSQIHIENEST*EDILK.I	2
*	Jamie_alpha_091208_7.03051.03051.3	3.6636	0.1399	97.8%	1926.6112	1923.9855	2	4.597	43.3%	1	R.SSQIHIENES*TEDILK.I	3

Reverse_YNL263C

6.1%

314

35498

8.9

YIF1 SGDID:S000005207, Chr XIV from 147841-146897, reverse complement, Verified ORF, "Integral membrane protein required for the fusion of ER-derived COPII transport vesicles with the Golgi; interacts with Yip1p and Yos1p; localizes to the Golgi, the ER, and COPII vesicles"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_8.03404.03404.2	2.1147	0.1408	95.2%	2205.4722	2205.2139	38	3.821	30.6%	1	K.KVTSKSISVHIDDDEAGSR.S	2

YNL225C

6.0%

581

67400

6.0

CNM67 SGDID:S000005169, Chr XIV from 224470-222725, reverse complement, Verified ORF, "Component of the spindle pole body outer plaque; required for spindle orientation and mitotic nuclear migration"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_1.00133.00133.2	2.3475	0.0463	93.7%	1279.6218	1277.3335	88	3.723	60.0%	2	K.DKS*PIGTDVHK.K	2
*	Jamie_alpha_091208_49.17301.17301.2	3.0736	0.263	100.0%	2776.2798	2778.0845	8	4.821	32.6%	1	K.AELFEIPIGILFFDLYDSEENSSK.L	2

YGL253W

6.0%

486

53943

5.3

HXK2 SGDID:S000003222, Chr VII from 23935-25395, Verified ORF, "Hexokinase isoenzyme 2 that catalyzes phosphorylation of glucose in the cytosol; predominant hexokinase during growth on glucose; functions in the nucleus to repress expression of HXK1 and GLK1 and to induce expression of its own gene"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_32.11775.11775.2	2.6048	0.1514	98.2%	3459.0122	3459.6147	1	5.158	25.0%	1	R.IEEDPFENLEDTDDLFQNEFGINTTVQER.K	2

YOR221C

5.8%

360

40707

6.9

MCT1 SGDID:S000005747, Chr XV from 757558-756476, reverse complement, Verified ORF, "Predicted malonyl-CoA:ACP transferase, putative component of a type-II mitochondrial fatty acid synthase that produces intermediates for phospholipid remodeling"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_10.04009.04009.2	2.2785	0.2597	91.7%	2449.1802	2447.8115	81	4.381	27.5%	1	K.FEMWALSSPRATDLPQEVQKL.L	2

YJR123W

5.8%

225

25039

8.6

RPS5 SGDID:S000003884, Chr X from 651816-652493, Verified ORF, "Protein component of the small (40S) ribosomal subunit, the least basic of the non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; has similarity to E. coli S7 and rat S5 ribosomal proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_15.05912.05912.2	2.2832	0.1305	96.7%	1340.8119	1340.609	1	4.147	62.5%	1	R.VNQAIALLTIGAR.E	2

Reverse_YOR334W

5.7%

470

54203

9.4

MRS2 SGDID:S000005861, Chr XV from 944591-946003, Verified ORF, "Mitochondrial inner membrane Mg(2+) channel, required for maintenance of intramitochondrial Mg(2+) concentrations at the correct level to support splicing of group II introns"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_75.26135.26135.3	2.8499	0.1484	90.8%	3192.1743	3195.439	84	3.57	23.1%	1	K.SELDYMLVSLKAAASPNTTDFVYVKDR.E	3

YCL028W

5.7%

405

42580

6.6

RNQ1 SGDID:S000000533, Chr III from 70150-71367, Verified ORF, "[PIN(+)] prion, an infectious protein conformation that is generally an ordered protein aggregate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_17.06363.06363.2	3.6771	0.409	100.0%	2506.2122	2506.7441	1	5.567	36.4%	1	K.LTSAAQSNPNDEQMSTIESLIQK.I	2

YDR074W

5.6%

896

102976

8.1

TPS2 SGDID:S000002481, Chr IV from 593889-596579, Verified ORF, "Phosphatase subunit of the trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_54.18990.18990.4	2.9192	0.2087	100.0%	5374.9717	5371.9683	32	4.129	14.3%	1	K.KTVAKAHLTDPQQVLETLGLLVGDVSLFQSAGTVDLDSRGHVKNS*ESSLK.S	4

YKL054C

5.6%

738

83973

5.0

DEF1 SGDID:S000001537, Chr XI from 338397-336181, reverse complement, Verified ORF, "RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and proteolysis of RNAPII"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_7.02750.02750.4	5.2871	0.204	100.0%	4705.0273	4705.733	284	3.557	15.8%	1	K.VNEQETSAQEQEEETAEPSEENEDRVPEVDGEEVQEEAEKK.E	4

YHR019C

5.6%

554

62207

5.8

DED81 SGDID:S000001061, Chr VIII from 143551-141887, reverse complement, Verified ORF, "Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_21.08016.08016.4	3.5616	0.1385	92.9%	3579.644	3579.7717	45	3.772	19.4%	1	K.DAITWLNEHDIKNEEGEDFKFGDDIAEAAER.K	4

YBL057C

5.6%

214

23128

5.4

PTH2 SGDID:S000000153, Chr II from 113447-112803, reverse complement, Verified ORF, "One of two (see also PTH1) mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for cell growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_9.03659.03659.2	2.6364	0.088	96.7%	1432.7855	1431.6042	2	4.021	59.1%	1	K.SSAT*LLRSKEMK.E	2

YOL092W

5.5%

308

34873

4.9

YOL092W SGDID:S000005452, Chr XV from 144203-145129, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_7.02993.02993.2	3.0437	0.2187	100.0%	1722.8322	1720.765	1	4.573	43.8%	1	E.EMAAPSSDGNAGDDNLR.E	2

Reverse_YLR167W

5.3%

152

17216

9.9

RPS31 SGDID:S000004157, Chr XII from 498949-499407, Verified ORF, "Fusion protein that is cleaved to yield a ribosomal protein of the small (40S) subunit and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_2.00435.00435.2	2.1174	0.0485	91.7%	871.5125	872.0615	80	3.103	71.4%	1	R.KKGGGRLR.L	2

YKL042W

5.2%

363

42271

7.9

SPC42 SGDID:S000001525, Chr XI from 358119-359210, Verified ORF, "Central plaque component of spindle pole body (SPB); involved in SPB duplication, may facilitate attachment of the SPB to the nuclear membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_9.03726.03726.2	4.3355	0.3879	100.0%	2333.8613	2334.2546	1	5.959	52.8%	1	R.DY*SPSSDACLECSNDLYEK.N	2
*	Jamie_alpha_091208_7.02856.02856.2	3.7032	0.3997	100.0%	2334.8723	2334.2546	1	6.384	41.7%	1	R.DYS*PSSDACLECSNDLYEK.N	2

YLR153C

5.1%

683

75492

6.7

ACS2 SGDID:S000004143, Chr XII from 447576-445525, reverse complement, Verified ORF, "Acetyl-coA synthetase isoform, required for growth on glucose; expressed under anaerobic conditions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_6.02670.02670.2	2.5108	0.2202	100.0%	1639.8522	1639.8027	2	4.472	50.0%	1	R.VGEAEIAKYDTSSLR.V	2
*	Jamie_alpha_091208_21.07836.07836.2	2.4139	0.1622	98.2%	2342.141	2342.6128	21	3.998	31.6%	1	R.VLGSVGEPISPDLWEWYHEK.V	2

Reverse_YOR324C

5.0%

602

67293

9.4

FRT1 SGDID:S000005851, Chr XV from 925035-923227, reverse complement, Verified ORF, "Tail-anchored endoplasmic reticulum membrane protein that is a substrate of the phosphatase calcineurin, interacts with homolog Frt2p, promotes cell growth in conditions of high Na+, alkaline pH, and cell wall stress"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_62.21513.21513.2	1.7213	0.1326	93.0%	3499.5923	3501.584	7	4.537	20.7%	1	R.NSNFDTKPSVRFPDDLSSAGSYSRSHRGVR.N	2

U	YBR118W	1	1	5.0%	458	50033	9.0	TEF2 SGDID:S000000322, Chr II from 477665-479041, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"
U	YPR080W	1	1	5.0%	458	50033	9.0	TEF1 SGDID:S000006284, Chr XVI from 700592-701968, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_7.02922.02922.2	2.3804	0.065	93.7%	2551.3123	2551.793	7	3.8	31.8%	1	K.SVEMHHEQLEQGVPGDNVGFNVK.N	2

YML105C

4.8%

273

31170

9.1

SEC65 SGDID:S000004573, Chr XIII from 58687-57866, reverse complement, Verified ORF, "Subunit of the signal recognition particle (SRP), involved in protein targeting to the ER; interacts with Srp54p; homolog of mammalian SRP19"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_6.02602.02602.2	2.8154	0.1403	99.0%	1456.7517	1457.5834	160	4.207	54.2%	1	K.ENGQLIGAAT*KFK.G	2

U	YBR031W	1	1	4.7%	362	39092	10.6	RPL4A SGDID:S000000235, Chr II from 300166-301254, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins"
U	YDR012W	1	1	4.7%	362	39062	10.6	RPL4B SGDID:S000002419, Chr IV from 471850-472938, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_10.03886.03886.3	3.1934	0.3587	100.0%	1846.9777	1847.0782	1	5.378	39.1%	1	K.VGYTLPSHIISTSDVTR.I	3

YBR079C

4.6%

964

110344

6.3

RPG1 SGDID:S000000283, Chr II from 398271-395377, reverse complement, Verified ORF, "Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_10.03976.03976.4	4.4553	0.1072	96.3%	5061.217	5062.149	2	4.34	17.1%	1	K.EVSEEENTEPEVQEEKEETDEALGPQETEDGEEKEEESDPVIIR.N	4

YGR124W

4.5%

572

64593

5.9

ASN2 SGDID:S000003356, Chr VII from 739949-741667, Verified ORF, "Asparagine synthetase, isozyme of Asn1p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_53.18591.18591.2	2.122	0.1285	95.4%	3271.6743	3271.6165	49	3.388	24.0%	1	K.ITRYFTPDWLDEKRIPST*PVDYHAIR.H	2

YLR019W

4.5%

397

44772

4.8

PSR2 SGDID:S000004009, Chr XII from 180287-181480, Verified ORF, "Functionally redundant Psr1p homolog, a plasma membrane phosphatase involved in the general stress response; required with Psr1p and Whi2p for full activation of STRE-mediated gene expression, possibly through dephosphorylation of Msn2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_53.18568.18568.2	2.0492	0.2237	98.9%	2036.9829	2035.0667	206	4.067	29.4%	1	K.TMQENGNSGNGKLAPLSR.D	2

YOL038W

4.3%

254

28439

7.4

PRE6 SGDID:S000005398, Chr XV from 255335-256099, Verified ORF, "20S proteasome alpha-type subunit"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_9.03577.03577.2	2.2471	0.2495	100.0%	1144.0013	1145.3416	90	4.722	65.0%	1	R.SLLEVVQTGAK.N	2

U	YJL138C	1	1	4.1%	395	44697	5.1	TIF2 SGDID:S000003674, Chr X from 154609-153422, reverse complement, Verified ORF, "Translation initiation factor eIF4A, identical to Tif1p; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G"
U	YKR059W	1	1	4.1%	395	44697	5.1	TIF1 SGDID:S000001767, Chr XI from 554629-555816, Verified ORF, "Translation initiation factor eIF4A, identical to Tif2p; DEA(D/H)-box RNA helicase that couples ATPase activity to RNA binding and unwinding; forms a dumbbell structure of two compact domains connected by a linker; interacts with eIF4G"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_14.05410.05410.2	4.1034	0.3235	100.0%	1786.6522	1785.9536	1	7.074	56.7%	1	R.GVFGYGFEEPSAIQQR.A	2

YGR279C

4.1%

386

40173

4.8

SCW4 SGDID:S000003511, Chr VII from 1049964-1048804, reverse complement, Verified ORF, "Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_8.03412.03412.2	2.3115	0.1506	98.3%	1885.899	1887.0656	37	4.37	40.0%	1	R.LYGTDCNQVENVFKAK.A	2

Reverse_YIL077C

4.1%

320

36946

8.9

YIL077C SGDID:S000001339, Chr IX from 215950-214988, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_23.08457.08457.2	1.9637	0.1178	94.2%	1466.7781	1464.6272	11	3.296	54.2%	1	-.SRNGGYRGSQLLR.Q	2

YJL053W

4.0%

379

42547

8.3

PEP8 SGDID:S000003589, Chr X from 335814-336953, Verified ORF, "Vacuolar protein sorting protein that forms part of the multimeric membrane-associated retromer complex along with Vps35p, Vps29p, Vps17p, and Vps5p; essential for endosome-to-Golgi retrograde protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_22.08434.08434.4	2.807	0.1504	93.5%	1777.4565	1773.857	13	3.822	34.5%	1	R.KHVDIATRSS*NSSYK.S	4

YBR193C

4.0%

223

25268

5.5

MED8 SGDID:S000000397, Chr II from 609748-609077, reverse complement, Verified ORF, "Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_14.05399.05399.2	1.9369	0.0998	94.2%	1041.5122	1039.2229	3	3.568	68.8%	1	R.LAQLTHSLR.R	2

YKL012W

3.9%

583

69065

8.9

PRP40 SGDID:S000001495, Chr XI from 417953-419704, Verified ORF, "U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_62.21777.21777.3	3.216	0.2077	100.0%	2917.75	2914.0715	76	4.018	27.3%	1	K.EAKDASGRIYYYNTLTKKSTWEK.P	3

Reverse_YPR055W

3.8%

1065

122224

6.8

SEC8 SGDID:S000006259, Chr XVI from 667673-670870, Verified ORF, "Essential 121kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_17.06558.06558.3	3.2305	0.2084	97.8%	4624.995	4622.1294	297	3.632	15.6%	1	K.NINNITKLLFGIRNFGENEQNRSPALPAQT*AANEQLMINGK.N	3

YLR303W

3.8%

444

48672

6.4

MET17 SGDID:S000004294, Chr XII from 732544-733878, Verified ORF, "O-acetyl homoserine-O-acetyl serine sulfhydrylase, required for sulfur amino acid synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_15.05725.05725.2	2.5699	0.0942	95.4%	2087.2476	2087.2065	26	3.397	37.5%	1	R.FVEGDNPEEFEKVFDER.T	2

Reverse_YHR097C

3.8%

366

40663

9.9

YHR097C SGDID:S000001139, Chr VIII from 298612-298488,298363-297388, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_45.16035.16035.2	1.9489	0.0973	91.2%	1609.017	1611.8821	11	3.446	46.2%	1	K.DITDVNKPPKVKTR.S	2

YOL094C

3.7%

323

36149

9.1

RFC4 SGDID:S000005454, Chr XV from 142554-141583, reverse complement, Verified ORF, "Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_9.03729.03729.2	2.2298	0.0501	90.3%	1345.6997	1346.656	4	3.065	63.6%	1	K.IVDSPHPLIVKK.M	2

contaminant_KERATIN22

3.6%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_2.00740.00740.2	2.3097	0.2436	100.0%	1741.7722	1742.716	1	4.869	38.6%	1	R.GGSGGGGSISGGGYGSGGGSGGR.Y	2

YMR273C

3.5%

915

103358

6.4

ZDS1 SGDID:S000004886, Chr XIII from 813979-811232, reverse complement, Verified ORF, "Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; has a role in localization of Bcy1p, a regulatory subunit of protein kinase A; implicated in mRNA nuclear export"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_53.18616.18616.3	3.4632	0.2917	100.0%	3458.0044	3455.6016	127	4.532	20.2%	1	K.PHHKHDASSSPSSSPS*SSPSIPNNDAVHVRVR.K	3

U	YJL158C	1	1	3.5%	227	23242	4.7	CIS3 SGDID:S000003694, Chr X from 122865-122182, reverse complement, Verified ORF, "Mannose-containing glycoprotein constituent of the cell wall; member of the PIR (proteins with internal repeats) family"
U	YKL164C	1	1	2.3%	341	34622	6.5	PIR1 SGDID:S000001647, Chr XI from 142824-141799, reverse complement, Verified ORF, "O-glycosylated protein required for cell wall stability; attached to the cell wall via beta-1,3-glucan; mediates mitochondrial translocation of Apn1p; expression regulated by the cell integrity pathway and by Swi5p during the cell cycle"
U	YKL163W	1	1	2.5%	325	33004	5.7	PIR3 SGDID:S000001646, Chr XI from 144406-145383, Verified ORF, "O-glycosylated covalently-bound cell wall protein required for cell wall stability; expression is cell cycle regulated, peaking in M/G1 and also subject to regulation by the cell integrity pathway"
U	YJL160C	1	1	2.8%	287	30215	9.0	YJL160C SGDID:S000003696, Chr X from 118820-117957, reverse complement, Uncharacterized ORF, "Hypothetical protein"
U	YJL159W	1	1	2.1%	387	38619	5.4	HSP150 SGDID:S000003695, Chr X from 120444-121607, Verified ORF, "O-mannosylated heat shock protein that is secreted and covalently attached to the cell wall via beta-1,3-glucan and disulfide bridges; required for cell wall stability; induced by heat shock, oxidative stress, and nitrogen limitation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_3.01110.01110.2	2.1514	0.1942	98.9%	829.49133	829.9749	1	4.384	85.7%	1	R.IGSIVANR.Q	2

Reverse_YOR322C

3.4%

818

89826

8.6

LDB19 SGDID:S000005849, Chr XV from 921057-918601, reverse complement, Verified ORF, "Protein of unknown function; null mutant shows a reduced affinity for the alcian blue dye suggesting a decreased net negative charge of the cell surface"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_15.05923.05923.4	3.4875	0.1496	96.2%	2936.5923	2931.961	183	3.656	22.8%	1	R.AAGTPVSVINSNSAGNSAKEKNTSHNSK.N	4

YCR053W

3.3%

514

57474

5.6

THR4 SGDID:S000000649, Chr III from 216692-218236, Verified ORF, "Threonine synthase, conserved protein that catalyzes formation of threonine from 0-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_52.18363.18363.2	2.6158	0.0951	96.0%	2059.4417	2060.3599	304	3.898	34.4%	1	K.DVALQFVGNLFEYFLQR.T	2

YFL037W

3.3%

457

50923

4.7

TUB2 SGDID:S000001857, Chr VI from 56335-57708, Verified ORF, "Beta-tubulin; associates with alpha-tubulin (Tub1p and Tub3p) to form tubulin dimer, which polymerizes to form microtubules"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_12.04576.04576.2	2.6893	0.1525	98.1%	1599.847	1599.7814	3	3.495	60.7%	1	R.SINVDLEPGTIDAVR.N	2

YML076C

3.2%

944

107560

7.6

WAR1 SGDID:S000004541, Chr XIII from 115347-112513, reverse complement, Verified ORF, "Homodimeric Zn2Cys6 zinc finger transcription factor; binds to a weak acid response element to induce transcription of PDR12 and FUN34, encoding an acid transporter and a putative ammonia transporter, respectively"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_47.16776.16776.4	4.1631	0.2467	100.0%	3332.7366	3334.3582	45	4.282	20.7%	1	K.GPTDSEESSLKDGTSYLASFPSDPNAKQFP.N	4

Reverse_YOR076C

3.2%

747

84779

7.8

SKI7 SGDID:S000005602, Chr XV from 471621-469378, reverse complement, Verified ORF, "Antiviral adaptor protein that mediates interactions via its N-terminus between the exosome and Ski complex (Ski2p, Ski3p, Ski8p) which operate in the 3'-to-5' mRNA-decay pathway; cytoplasmic protein required for degrading nonstop mRNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_62.21680.21680.3	3.1471	0.1646	96.4%	2765.6042	2765.1423	131	3.959	26.1%	1	K.KLASLKLSLSVSHQNPTFDS*RKVK.D	3

Reverse_YNL293W

3.2%

633

72999

7.6

MSB3 SGDID:S000005237, Chr XIV from 80640-82541, Verified ORF, "GTPase-activating protein for Sec4p and several other Rab GTPases, regulates exocytosis via its action on Sec4p, also required for proper actin organization; similar to Msb4p; both Msb3p and Msb4p localize to sites of polarized growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_54.19052.19052.2	2.418	0.2094	98.9%	2404.0024	2406.7654	20	4.332	31.6%	1	R.MQKVKEKISNNWHVGALS*KK.F	2

YJR059W

3.1%

818

91400

8.9

PTK2 SGDID:S000003820, Chr X from 545701-548157, Verified ORF, "Putative serine/threonine protein kinase involved in regulation of ion transport across plasma membrane; enhances spermine uptake"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_52.18176.18176.2	2.7177	0.3127	100.0%	2679.2996	2677.8906	6	5.343	31.2%	1	N.NPYLNSPSDILGTGTGIASTRDRDR.A	2

Reverse_YLR023C

3.1%

543

62571

9.2

IZH3 SGDID:S000004013, Chr XII from 187128-185497, reverse complement, Verified ORF, "Membrane protein involved in zinc metabolism, member of the four-protein IZH family, expression induced by zinc deficiency; deletion reduces sensitivity to elevated zinc and shortens lag phase, overexpression reduces Zap1p activity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_56.19668.19668.3	2.8757	0.1452	91.5%	2389.1274	2387.4495	421	3.697	32.8%	1	K.SHTNYFRYGHIIYRNER.W	3

Reverse_YDR306C

3.1%

478

54437

8.6

YDR306C SGDID:S000002714, Chr IV from 1075165-1073729, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_72.24826.24826.2	2.6712	0.0965	95.9%	1762.1548	1759.7876	2	3.317	50.0%	1	K.SALGLSGSCELYLTK.L	2

YPL217C

3.0%

1183

135571

6.8

BMS1 SGDID:S000006138, Chr XVI from 143170-139619, reverse complement, Verified ORF, "Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits and for processing of the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, has similarity to Tsr1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_10.04074.04074.3	3.635	0.152	98.1%	4092.8594	4090.0945	51	3.613	19.1%	1	R.IYGKPVQEEDADIDNLPSDEEPY*TNDDDVQDSEPR.M	3

YDR395W

3.0%

944

108405

4.7

SXM1 SGDID:S000002803, Chr IV from 1263314-1266148, Verified ORF, "Nuclear transport factor (karyopherin) involved in protein transport between the cytoplasm and nucleoplasm; similar to Nmd5p, Cse1p, Lph2p, and the human cellular apoptosis susceptibility protein, CAS1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_60.21141.21141.2	2.7707	0.2486	100.0%	3148.0693	3145.4468	1	4.611	29.6%	1	R.DYIDSVIEELFPIVEGIASNIGSQTDYR.S	2

YKR010C

2.9%

771

86366

8.0

TOF2 SGDID:S000001718, Chr XI from 460882-458567, reverse complement, Verified ORF, "Nonessential mitochondrial protein of unknown function with sequence similarity to Net1p; identified as a topoisomerase I (Top1p) binding protein; displays synthetic genetic interactions with TOP1 and HPR1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_13.05093.05093.4	3.167	0.1439	93.8%	2737.2874	2732.9236	28	3.423	27.8%	1	R.FKPTGETKVQKRNSITEPYYGK.F	4

YBL099W

2.9%

545

58618

9.0

ATP1 SGDID:S000000195, Chr II from 37050-38687, Verified ORF, "Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_15.05953.05953.2	2.792	0.1651	98.9%	1566.7723	1564.8253	12	3.918	43.3%	1	R.TGNIVDVPVGPGLLGR.V	2

YGR162W

2.8%

952

107101

6.0

TIF4631 SGDID:S000003394, Chr VII from 824064-826922, Verified ORF, "Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4632p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_58.20332.20332.3	3.8607	0.2099	100.0%	2847.5225	2848.2231	1	4.768	26.9%	1	R.TGQATLEGSQLLDSLFGILDNIIQTAK.I	3

U	YGL008C	1	1	2.8%	918	99619	5.1	PMA1 SGDID:S000002976, Chr VII from 482671-479915, reverse complement, Verified ORF, "Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; part of the P2 subgroup of cation-transporting ATPases"
U	YPL036W	1	1	2.7%	947	102172	5.0	PMA2 SGDID:S000005957, Chr XVI from 482841-485684, Verified ORF, "Plasma membrane H+-ATPase, isoform of Pma1p, involved in pumping protons out of the cell; regulator of cytoplasmic pH and plasma membrane potential"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_9.03442.03442.3	4.147	0.2744	100.0%	3022.4307	3022.2114	1	4.863	28.0%	1	K.TVEEDHPIPEDVHENYENKVAELASR.G	3

YDL206W

2.8%

762

85983

6.2

YDL206W SGDID:S000002365, Chr IV from 90177-92465, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_25.09472.09472.2	2.7102	0.3327	100.0%	2405.112	2406.5254	66	5.089	27.5%	1	Y.VRPLGDTQIDEDNAISLDPT*R.L	2

Reverse_YDR365C

2.7%

628

72410

5.3

ESF1 SGDID:S000002773, Chr IV from 1206373-1204487, reverse complement, Verified ORF, "Nucleolar protein involved in pre-rRNA processing; depletion causes severely decreased 18S rRNA levels"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_14.05363.05363.2	1.9083	0.1223	93.6%	2006.0322	2004.1328	41	3.266	37.5%	1	K.GGKPVFSSFTIMLDESK.V	2

YBL054W

2.7%

525

59226

9.3

YBL054W SGDID:S000000150, Chr II from 117592-119169, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_23.08553.08553.2	2.2104	0.1152	95.5%	1781.195	1779.9255	191	4.062	42.3%	1	R.RASLVVSPYMSPRR.L	2

U	contaminant_SPA1_STAAU	1	1	2.7%	524	57320	5.7	owl\|P02976\| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...
U	contaminant_SPA2_STAAU	1	1	2.8%	508	55439	5.7	owl\|P38507\| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_6.02648.02648.2	3.6525	0.3244	100.0%	1460.7109	1459.5529	1	6.323	80.8%	1	K.DDPSQSANLLAEAK.K	2

YMR205C

2.6%

959

104618

6.7

PFK2 SGDID:S000004818, Chr XIII from 674765-671886, reverse complement, Verified ORF, "Beta subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_16.05967.05967.2	1.7208	0.1268	91.2%	2966.912	2967.1104	15	3.635	27.1%	1	-.MTVTTPFVNGTSYCTVTAYSVQSYK.A	2

YCR084C

2.5%

713

78308

5.7

TUP1 SGDID:S000000680, Chr III from 262448-260307, reverse complement, Verified ORF, "General repressor of transcription, forms complex with Cyc8p, involved in the establishment of repressive chromatin structure through interactions with histones H3 and H4, appears to enhance expression of some genes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_10.03851.03851.2	3.1524	0.2731	100.0%	1997.9321	1998.1107	1	5.782	44.1%	1	K.DVENLNTSSSPSSDLYIR.S	2

Reverse_YLR072W

2.5%

693

78212

6.2

YLR072W SGDID:S000004062, Chr XII from 278863-280944, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_11.04349.04349.2	2.7698	0.1484	98.1%	1824.9885	1826.0135	154	3.779	40.6%	1	R.PSGFS*TVSPLPKLTDAK.E	2
*	Jamie_alpha_091208_11.04407.04407.2	3.0421	0.0894	97.4%	1827.9934	1826.0135	17	3.445	50.0%	1	R.PSGFST*VSPLPKLTDAK.E	2

Reverse_YGL003C

2.5%

566

62822

8.6

CDH1 SGDID:S000002971, Chr VII from 494178-492478, reverse complement, Verified ORF, "Cell-cycle regulated activator of the anaphase-promoting complex/cyclosome (APC/C), which directs ubiquitination of mitotic cyclins resulting in exit from mitosis; targets the APC/C to specific substrates including CDC20, ASE1 and CIN8"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_3.01047.01047.4	3.2718	0.1273	92.6%	1794.9043	1794.882	164	3.752	34.6%	1	R.RGKRQQYTLLSAGR.V	4

YMR307W

2.5%

559

59582

4.7

GAS1 SGDID:S000004924, Chr XIII from 887002-888681, Verified ORF, "Beta-1.3-glucanosyltransferase, required for cell wall assembly; localizes to the cell surface via a glycosylphosphatidylinositol (GPI) anchor"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_23.08753.08753.2	2.1364	0.1655	98.3%	1703.5294	1701.8297	251	4.144	42.3%	1	R.DDPTWTVDLFNSYK.T	2

YOR086C

2.4%

1186

133576

7.2

TCB1 SGDID:S000005612, Chr XV from 486780-483220, reverse complement, Verified ORF, "Contains three calcium and lipid binding domains; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery; C-terminal portion of Tcb1p, Tcb2p and Tcb3p interact"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_58.20295.20295.2	2.5619	0.2132	100.0%	3374.791	3373.781	1	5.592	28.6%	1	R.DTLNPVWDETLYVLLNSFTDPLTISVYDK.R	2

YIL166C

2.4%

542

61898

8.9

YIL166C SGDID:S000001428, Chr IX from 32566-30938, reverse complement, Uncharacterized ORF, "Hypothetical protein, member of the Dal5p subfamily of the major facilitator family"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_15.05909.05909.1	1.2155	0.2726	100.0%	1721.58	1721.8241	6	4.042	33.3%	1	M.AVATKFYYISRNK.Y	1

YBR148W

2.3%

609

70175

7.1

YSW1 SGDID:S000000352, Chr II from 537870-539699, Verified ORF, "Protein expressed specifically in spores"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_51.17876.17876.2	2.0952	0.074	90.1%	1736.9521	1735.851	269	3.466	38.5%	1	R.NSIFKS*ANDVKEFR.N	2

YHR102W

2.2%

1080

117061

8.0

KIC1 SGDID:S000001144, Chr VIII from 316575-319817, Verified ORF, "Protein kinase of the PAK/Ste20 kinase family, required for cell integrity possibly through regulating 1,6-beta-glucan levels in the wall; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_58.20435.20435.3	3.1371	0.1352	91.9%	2905.3765	2902.1738	68	3.471	23.9%	1	R.YYGSYLKDTSLWIIMEHCAGGS*LR.S	3

YDR356W

2.2%

944

111782

7.1

SPC110 SGDID:S000002764, Chr IV from 1186098-1188932, Verified ORF, "Inner plaque spindle pole body (SPB) component, ortholog of human kendrin; involved in connecting nuclear microtubules to SPB; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-dependent manner"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_13.05185.05185.3	5.1941	0.4327	100.0%	2431.3076	2429.7332	4	7.696	37.5%	1	K.TVKDQVLELENNSDVQSLKLR.S	3
*	Jamie_alpha_091208_10.03880.03880.2	4.1032	0.3129	100.0%	1833.8922	1831.9744	1	5.95	66.7%	1	K.DQVLELENNSDVQSLK.L	2

YOR373W

2.2%

851

94104

7.0

NUD1 SGDID:S000005900, Chr XV from 1036830-1039385, Verified ORF, "Component of the spindle pole body outer plaque, required for exit from mitosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_6.02640.02640.2	3.8206	0.2871	100.0%	2289.9172	2290.2268	1	6.046	47.2%	1	K.IQEEENLANSDDTPLDTPK.F	2

Reverse_YGR266W

2.1%

701

81191

6.9

YGR266W SGDID:S000003498, Chr VII from 1022662-1024767, Verified ORF, "Protein of unknown function;predicted to contain a single transmembrane domain; localized to both the mitochondrion and the plasma membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_22.08222.08222.2	2.4508	0.26	90.9%	1765.8121	1766.963	73	4.403	39.3%	1	R.GVTLFNETKMFSDNY.S	2

U	YMR186W	1	1	2.0%	705	80900	4.8	HSC82 SGDID:S000004798, Chr XIII from 632354-634471, Verified ORF, "Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels that HSP82 and induced 2-3 fold by heat shock"
U	YPL240C	1	1	2.0%	709	81406	4.9	HSP82 SGDID:S000006161, Chr XVI from 98625-96496, reverse complement, Verified ORF, "Cytoplasmic chaperone (Hsp90 family) required for pheromone signaling and negative regulation of Hsf1p; docks with the mitochondrial import receptor Tom70p for preprotein delivery; interacts with co-chaperones Cns1p, Cpr6p, Cpr7p, and Sti1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_6.02467.02467.2	3.2806	0.1893	100.0%	1739.7612	1740.7748	1	4.761	69.2%	1	K.DFELEETDEEKAER.E	2

YNL287W

1.9%

935

104831

5.1

SEC21 SGDID:S000005231, Chr XIV from 91994-94801, Verified ORF, "Gamma subunit of coatomer, a heptameric protein complex that together with Arf1p forms the COPI coat; involved in ER to Golgi transport of selective cargo"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_20.07656.07656.2	2.1598	0.089	93.6%	2199.6653	2202.3396	256	3.476	32.4%	1	K.FESVQLETAKLITSFATR.N	2

YDL126C

1.9%

835

91996

4.9

CDC48 SGDID:S000002284, Chr IV from 238664-236157, reverse complement, Verified ORF, "ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p and Ufd1p participates in retrotranslocation of ubiquitinated proteins from the ER into the cytosol for degradation by the proteasome"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_21.07929.07929.2	2.3321	0.19	99.0%	1741.8823	1739.9689	132	3.945	40.0%	1	K.ATQGFSGADLLYIVQR.A	2

YDR443C

1.7%

1420

160000

5.8

SSN2 SGDID:S000002851, Chr IV from 1349928-1345666, reverse complement, Verified ORF, "Protein required for stable association of Srb10p-Srb11p kinase with RNA polymerase holoenzyme; subunit of the RNA polymerase II mediator complex; essential for transcriptional regulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_52.18434.18434.2	1.8792	0.1126	92.4%	2773.4207	2774.832	33	3.027	26.1%	1	K.VNNSVSKTGSVDTLHNKEGTLEQR.E	2

YLR067C

1.7%

965

112646

9.3

PET309 SGDID:S000004057, Chr XII from 270711-267814, reverse complement, Verified ORF, "Specific translational activator for the COX1 mRNA, also influences stability of intron-containing COX1 primary transcripts; located in the mitochondrial inner membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_12.04571.04571.2	3.3578	0.0598	96.7%	1771.853	1770.9774	132	3.172	46.7%	1	R.IENIENLPSSTTPNIK.L	2

YDR176W

1.7%

702

79282

5.1

NGG1 SGDID:S000002583, Chr IV from 814447-816555, Verified ORF, "Transcriptional regulator involved in glucose repression of Gal4p-regulated genes; component of transcriptional adaptor and histone acetyltransferase complexes, the ADA complex, the SAGA complex, and the SLIK complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_47.16772.16772.2	2.0436	0.0982	94.3%	1546.1129	1545.5162	51	3.244	50.0%	1	K.YNVASYPTNDLK.D	2

Reverse_YPL137C

1.6%

1276

140891

7.4

YPL137C SGDID:S000006058, Chr XVI from 296646-292816, reverse complement, Uncharacterized ORF, "Glc7-interacting protein whose overexpression relocalizes Glc7p from the nucleus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_44.15804.15804.2	2.2045	0.0779	92.4%	2064.652	2063.146	99	3.866	34.2%	1	K.GKGVSSSATANIASSALRPK.S	2

YGL086W

1.6%

749

87651

5.4

MAD1 SGDID:S000003054, Chr VII from 347122-349371, Verified ORF, "Coiled-coil protein involved in the spindle-assembly checkpoint; phosphorylated by Mps1p upon checkpoint activation which leads to inhibition of the activity of the anaphase promoting complex; forms a complex with Mad2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_10.03847.03847.2	2.1122	0.0982	94.9%	1484.7128	1487.6067	146	3.331	50.0%	1	K.YLIADLNENT*LK.S	2

U	YAR009C	1	1	1.4%	1196	136732	8.6	YAR009C SGDID:S000000067, Chr I from 164188-160598, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YML045W	1	1	1.0%	1755	198524	8.2	YML045W SGDID:S000004508, Chr XIII from 184461-185765,185767-189729, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YML039W	1	1	1.0%	1755	198571	8.1	YML039W SGDID:S000004503, Chr XIII from 196628-197932,197934-201896, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YLR227W-B	1	1	1.0%	1755	198404	7.9	YLR227W-B SGDID:S000007376, Chr XII from 593440-594744,594746-598708, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YLR157C-B	1	1	1.0%	1755	198544	8.1	YLR157C-B SGDID:S000007374, Chr XII from 481602-480298,480296-476334, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YLR035C-A	1	1	1.5%	1155	131617	8.7	YLR035C-A SGDID:S000007225, Chr XII from 218908-215441, reverse complement, transposable_element_gene, "Ty ORF"
U	YJR029W	1	1	1.0%	1755	198616	8.3	YJR029W SGDID:S000003790, Chr X from 478258-479558,479560-483526, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YJR027W	1	1	1.0%	1755	198651	8.0	YJR027W SGDID:S000003788, Chr X from 472674-473975,473977-477942, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YHR214C-B	1	1	0.9%	1793	202816	8.3	YHR214C-B SGDID:S000003534, Chr VIII from 549346-547931,547929-543964, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YGR161C-D	1	1	1.0%	1755	198558	8.5	YGR161C-D SGDID:S000007368, Chr VII from 823020-821716,821714-817752, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YGR038C-B	1	1	1.0%	1755	198520	8.2	YGR038C-B SGDID:S000007408, Chr VII from 567471-566167,566165-562203, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YGR027W-B	1	1	1.0%	1755	198656	8.2	YGR027W-B SGDID:S000007406, Chr VII from 536061-537365,537367-541329, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YER160C	1	1	1.0%	1755	198568	8.5	YER160C SGDID:S000000962, Chr V from 498119-496818,496816-492851, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YER138C	1	1	1.0%	1755	198561	8.1	YER138C SGDID:S000000940, Chr V from 449020-447719,447717-443752, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR365W-B	1	1	1.0%	1755	198658	8.0	YDR365W-B SGDID:S000007401, Chr IV from 1206987-1208291,1208293-1212255, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR316W-B	1	1	1.0%	1755	198526	8.2	YDR316W-B SGDID:S000007399, Chr IV from 1096059-1097363,1097365-1101327, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR261C-D	1	1	1.1%	1604	181660	7.5	YDR261C-D SGDID:S000007395, Chr IV from 992343-991039,991037-987528, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR210C-D	1	1	1.0%	1755	198838	8.4	YDR210C-D SGDID:S000007410, Chr IV from 883922-882618,882616-878654, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR098C-B	1	1	1.0%	1755	198594	8.4	YDR098C-B SGDID:S000007391, Chr IV from 651121-649817,649815-645853, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YBR012W-B	1	1	1.0%	1756	198868	8.5	YBR012W-B SGDID:S000002155, Chr II from 259867-261171,261173-265138, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YBL005W-B	1	1	1.0%	1755	198968	8.2	YBL005W-B SGDID:S000002147, Chr II from 221333-222637,222639-226601, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_alpha_091208_53.18606.18606.2	3.8069	0.3577	100.0%	1981.3674	1982.3275	2	6.451	46.9%	1	R.REDSILDVFTTILAFIK.N	2

YGL207W

1.4%

1035

118630

5.1

SPT16 SGDID:S000003175, Chr VII from 98973-102080, Verified ORF, "Subunit of the heterodimeric FACT complex (Spt16p-Pob3p), facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilizing and then reassembling nucleosome structure"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_17.06352.06352.2	2.5287	0.2278	100.0%	1686.6322	1684.9304	45	4.576	46.4%	1	K.ALADVVQQDKLIENK.T	2

YGL120C

1.3%

767

87562

6.4

PRP43 SGDID:S000003088, Chr VII from 283943-281640, reverse complement, Verified ORF, "RNA helicase in the DEAH-box family, involved in release of the lariat-intron from the spliceosome"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_13.04952.04952.2	1.957	0.1168	94.9%	1205.6322	1203.2511	63	3.547	61.1%	1	K.LGEEVGYS*IR.F	2

Reverse_YPR018W

1.3%

606

70210

6.7

RLF2 SGDID:S000006222, Chr XVI from 594473-596293, Verified ORF, "Largest subunit (p90) of the Chromatin Assembly Complex (CAF-I) with Cac2p and Msi1p that assembles newly synthesized histones onto recently replicated DNA; involved in the maintenance of transcriptionally silent chromatin"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_1.00019.00019.2	2.0494	0.0528	90.5%	1029.6504	1029.2308	17	3.425	71.4%	1	K.QKKLEARR.Q	2

YDR150W

0.4%

2748

313032

5.4

NUM1 SGDID:S000002557, Chr IV from 755623-763869, Verified ORF, "Protein required for nuclear migration, localizes to the mother cell cortex and the bud tip; may mediate interactions of dynein and cytoplasmic microtubules with the cell cortex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_60.21102.21102.2	1.8524	0.0945	90.1%	1537.738	1536.5618	2	3.023	54.5%	1	K.RLSASRRSVSTR.S	2

YKR054C

0.2%

4092

471351

6.3

DYN1 SGDID:S000001762, Chr XI from 547567-535289, reverse complement, Verified ORF, "Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_alpha_091208_13.05070.05070.2	1.9446	0.1682	98.2%	1109.5339	1108.2085	3	4.102	75.0%	1	K.ESLY*GSMLK.A	2

	Proteins	Peptide IDs	Spectra
Unfiltered	10063	46767	51529
Filtered	135	275	291
Forward matches	112	251	267
Decoy matches	23	24	24
Forward FP rate	20.54%	9.56%	8.99%

/data/1/catclw/Projects/Jamie/Jamie_June2008/Alpha_09102008/splitted