D splitted

682

79175

5.3

MPS3 SGDID:S000003556, Chr X from 402813-404861, Verified ORF, "Essential integral membrane protein required for spindle pole body duplication and for nuclear fusion, localizes to the spindle pole body half bridge, interacts with DnaJ-like chaperone Jem1p and with centrin homolog Cdc31p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_1.04834.04834.4	3.3517	0.0421	93.6%	4392.0166	4394.864	23	2.528	17.1%	1	K.HNRRQLESMSTSITEVQKT*LSNIDNEFNVLNSPLLRK.I	3 4

YBR260C

666

74619

8.3

RGD1 SGDID:S000000464, Chr II from 734634-732634, reverse complement, Verified ORF, "GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, possibly involved in control of actin cytoskeleton organization"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_17.18614.18614.4	3.7814	0.1283	99.0%	3801.6565	3799.0312	95	3.15	18.1%	1	R.MIS*THNESPFLSSSSNTAAVPNANLNSATPSLNTNK.Q	4

YBR249C

370

39749

6.9

ARO4 SGDID:S000000453, Chr II from 717989-716877, reverse complement, Verified ORF, "3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) synthase, catalyzes the first step in aromatic amino acid biosynthesis and is feedback-inhibited by tyrosine"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_15.17246.17246.2	2.2968	0.2269	90.0%	2038.3522	2036.3075	5	5.18	34.2%	1	K.SVAEAKAQLPAGSNGLMIDY.S	2

YBL092W

130

14771

11.2

RPL32 SGDID:S000000188, Chr II from 45975-46367, Verified ORF, "Protein component of the large (60S) ribosomal subunit, has similarity to rat L32 ribosomal protein; overexpression disrupts telomeric silencing"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_1.00653.00653.2	1.9663	0.1268	98.1%	902.21216	903.0287	244	3.916	75.0%	1	R.VAENWRK.Q	2

YJR064W

562

61914

5.5

CCT5 SGDID:S000003825, Chr X from 555828-557516, Verified ORF, "Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_50.30963.30963.3	3.6443	0.1768	99.6%	3100.4944	3100.4473	2	4.353	24.1%	1	K.SQDDEIGDGTTGVVVLASALLDQALELIQK.G	3

Reverse_YOR307C

453

50903

9.7

SLY41 SGDID:S000005834, Chr XV from 894087-892726, reverse complement, Verified ORF, "Protein involved in ER-to-Golgi transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_8.13074.13074.3	2.6572	0.1065	90.9%	2676.5942	2677.7527	136	3.754	22.8%	1	K.DLSPQGEKSTVDDTSSSPLIGVKR.R	3

YHR195W

321

36421

5.2

NVJ1 SGDID:S000001238, Chr VIII from 490747-491712, Verified ORF, "Nuclear envelope protein that interacts with the vacuolar membrane protein Vac8p to promote formation of nucleus-vacuole junctions during piecemeal microautophagy of the nucleus (PMN)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_13.08847.08847.2	1.8184	0.0548	90.4%	2009.4122	2010.0844	248	3.31	31.2%	1	K.REALT*AEQPDAGELSWR.K	2

Reverse_YOR287C

300

36125

8.6

YOR287C SGDID:S000005813, Chr XV from 851836-850934, reverse complement, Uncharacterized ORF, "Protein required for cell viability"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_22.21632.21632.2	1.4231	0.1289	93.2%	1792.8322	1795.0488	54	4.08	36.7%	1	K.RIISSDLAKGTSKDFR.I	2

U	YGL076C	1	1	5.3%	244	27638	10.1	RPL7A SGDID:S000003044, Chr VII from 365999-365989,365529-365436,364967-364338, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Bp and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"
U	YPL198W	1	1	5.3%	244	27696	10.1	RPL7B SGDID:S000006119, Chr XVI from 173151-173161,173571-173664,174072-174701, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Ap and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_01_itms_4.03143.03143.2	2.6347	0.3333	100.0%	1572.5322	1573.6592	2	5.468	58.3%	1	R.NAAYQKEYETAER.N	2

Reverse_YGR238C

882

99975

8.1

KEL2 SGDID:S000003470, Chr VII from 968692-966044, reverse complement, Verified ORF, "Protein that functions in a complex with Kel1p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_17.11398.11398.4	3.7492	0.087	98.4%	5218.4565	5219.8804	29	2.978	16.7%	1	R.FSSLDFVVLDNFYTEDVQGGFLYLKTQMPNSAIISIKHGY*RGLPR.R	2 4

Reverse_YER080W

627

72414

8.6

YER080W SGDID:S000000882, Chr V from 319959-321842, Uncharacterized ORF, "The authentic, non-tagged protein was localized to the mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_36.22664.22664.4	3.3175	0.1179	98.2%	3654.2166	3656.0344	25	3.273	18.8%	1	K.LTRPYMLEASSGAEKMAIRTKANEAELLGTNK.I	4

Reverse_YOR066W

629

68691

10.0

YOR066W SGDID:S000005592, Chr XV from 449437-451326, Uncharacterized ORF, "Protein of unknown function; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_68.42183.42183.4	3.6204	0.1448	99.0%	3619.9365	3620.915	24	3.096	19.9%	1	R.FQLSSKPTSPPKLQASSPPSQPPQSLLINNNR.A	4

YPL030W

567

64855

8.6

YPL030W SGDID:S000005951, Chr XVI from 493541-495244, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_21.13892.13892.4	3.6724	0.0588	97.5%	3262.7366	3259.6196	263	3.805	22.6%	1	R.DLGCGNGALCYILLSES*IKGLGIDARKRK.S	4

YMR169C

506

55385

5.7

ALD3 SGDID:S000004779, Chr XIII from 600871-599351, reverse complement, Verified ORF, "Cytoplasmic aldehyde dehydrogenase, involved in beta-alanine synthesis; uses NAD+ as the preferred coenzyme; very similar to Ald2p; expression is induced by stress and repressed by glucose"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_7.05362.05362.4	3.0218	0.0797	93.3%	3153.2966	3150.401	10	3.467	23.3%	1	K.SYIERGKKEEKLDMFQTSEFPIGGAK.G	4

Reverse_YIR004W

432

48575

5.2

DJP1 SGDID:S000001443, Chr IX from 363218-364516, Verified ORF, "Cytosolic J-domain-containing protein, required for peroxisomal protein import and involved in peroxisome assembly, homologous to E. coli DnaJ"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_56.34803.34803.4	2.9521	0.2403	99.3%	2622.7366	2624.793	46	4.49	25.4%	1	K.CVGRLTSTIEYKSGHWAASLVK.G	4

YLR226W

395

45721

7.8

BUR2 SGDID:S000004216, Chr XII from 589356-590543, Verified ORF, "Cyclin for the Sgv1p (Bur1p) protein kinase; Sgv1p and Bur2p comprise a CDK-cyclin complex involved in transcriptional regulation through its phosphorylation of the carboxy-terminal domain of the largest subunit of RNA polymerase II"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06634.06634.2	1.9151	0.0784	93.7%	2453.4321	2451.804	7	3.849	34.2%	1	K.DLLDKAKQES*MKRKAKDPIR.T	3 2

YGR192C

332

35747

7.0

TDH3 SGDID:S000003424, Chr VII from 883815-882817, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_5.04017.04017.3	2.9339	0.1827	99.0%	1885.1643	1884.0557	1	4.807	48.4%	1	R.YAGEVSHDDKHIIVDGK.K	2 3

YIL152W

235

27201

10.0

YIL152W SGDID:S000001414, Chr IX from 56545-57252, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_58.36037.36037.2	1.3957	0.1341	93.7%	1422.7922	1421.6829	260	3.68	36.4%	1	K.LPKDQTIILHSR.A	2

YJL115W

5.0%

279

31603

4.0

ASF1 SGDID:S000003651, Chr X from 196206-197045, Verified ORF, "Nucleosome assembly factor, involved in chromatin assembly after DNA replication, anti-silencing protein that causes derepression of silent loci when overexpressed"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_25.16202.16202.2	1.8115	0.0852	93.7%	1541.5721	1542.5969	6	3.895	50.0%	1	R.KIEGGSTDIEST*PK.D	2

YKL168C

4.9%

734

83656

8.8

KKQ8 SGDID:S000001651, Chr XI from 133497-131293, reverse complement, Verified ORF, "Putative serine/threonine protein kinase with unknown cellular role"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_57.35289.35289.4	3.0091	0.2455	99.6%	4282.0566	4287.6157	19	3.021	18.6%	1	K.NLFRPPRSRDSSPINVTRIPYRSSSTSPKRSSEPPR.R	4

Reverse_YLR191W

4.9%

386

42706

9.0

PEX13 SGDID:S000004181, Chr XII from 537274-538434, Verified ORF, "Integral peroxisomal membrane receptor for the PTS1 peroxisomal matrix protein signal recognition factor Pex5p, required for the translocation of peroxisomal matrix proteins, also interacts with Pex7p and Pex14p, contains a C-terminal SH3 domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_15.09937.09937.3	2.8942	0.2431	99.6%	2363.8442	2360.3667	77	4.212	27.8%	1	K.ENSNITGSDNFKQFDEILK.N	3

Reverse_YGR013W

4.8%

620

71383

5.0

SNU71 SGDID:S000003245, Chr VII from 514558-516420, Verified ORF, "Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_11.14922.14922.4	2.8166	0.094	92.2%	3596.2566	3597.8772	262	3.166	21.3%	1	R.SFSSSVGQLSVTHIQQDLSIPLFQKLEQYR.S	4

Reverse_YBL015W

4.8%

526

58712

6.8

ACH1 SGDID:S000000111, Chr II from 194125-195705, Verified ORF, "Acetyl-coA hydrolase, primarily localized to mitochondria; required for acetate utilization and for diploid pseudohyphal growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_25.23240.23240.3	2.7565	0.1588	97.0%	2877.7444	2881.1057	16	4.215	26.0%	1	R.FFEVLHGAIARSMDDSPT*NPPVQDR.M	3

YER179W

4.8%

334

36613

5.9

DMC1 SGDID:S000000981, Chr V from 548416-548547,548640-549512, Verified ORF, "Meiosis-specific protein required for repair of double-strand breaks and pairing between homologous chromosomes; homolog of Rad51p and the bacterial RecA protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_17.11180.11180.2	2.0257	0.1189	98.0%	1852.6921	1852.8695	2	4.514	46.7%	1	K.ECVY*VIGEKGITDSSD.-	2

Reverse_YNL247W

767

87530

6.9

YNL247W SGDID:S000005191, Chr XIV from 182876-185179, Uncharacterized ORF, "Protein required for cell viability"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26489.26489.4	2.8757	0.1035	94.2%	4139.2563	4140.468	304	3.518	17.6%	1	K.TVLESLTKLAVPTSLNDCFASHVKSESEVFDALLEK.E	4

YJR030C

745

84290

7.2

YJR030C SGDID:S000003791, Chr X from 486110-483873, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_24.15586.15586.4	2.8412	0.1109	94.8%	4177.3364	4176.7065	94	2.752	18.1%	1	R.KISGYLRCILRKHAANHDDMS*LTQSIVNSYKSLFK.D	4

Reverse_YJR049C

530

59469

7.2

UTR1 SGDID:S000003810, Chr X from 528390-526798, reverse complement, Verified ORF, "NAD kinase, active as a hexamer; enhances the activity of ferric reductase (Fre1p)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_27.24329.24329.2	1.9229	0.2712	99.8%	2338.132	2338.41	77	4.937	25.0%	1	K.SSGRTGNISTGGGSNANGNVLSSDK.N	2

Reverse_YJR125C

408

45091

4.8

ENT3 SGDID:S000003886, Chr X from 655878-654652, reverse complement, Verified ORF, "Protein containing an N-terminal epsin-like domain involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_5.09810.09810.2	1.5598	0.1199	93.8%	1955.3322	1957.9628	91	3.945	36.1%	1	K.SNLSGDASASGGAVGKYKK.A	2

U	YJL159W	2	3	4.7%	387	38619	5.4	HSP150 SGDID:S000003695, Chr X from 120444-121607, Verified ORF, "O-mannosylated heat shock protein that is secreted and covalently attached to the cell wall via beta-1,3-glucan and disulfide bridges; required for cell wall stability; induced by heat shock, oxidative stress, and nitrogen limitation"
U	YKL164C	2	3	5.3%	341	34622	6.5	PIR1 SGDID:S000001647, Chr XI from 142824-141799, reverse complement, Verified ORF, "O-glycosylated protein required for cell wall stability; attached to the cell wall via beta-1,3-glucan; mediates mitochondrial translocation of Apn1p; expression regulated by the cell integrity pathway and by Swi5p during the cell cycle"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_01_itms_1.00877.00877.2	2.01	0.1487	98.4%	973.83215	974.10504	1	3.782	77.8%	1	K.GGILTDGKGR.I	2
	Jamie_01_itms_3.02147.02147.2	2.7073	0.1124	99.2%	832.1122	829.9749	2	4.88	85.7%	2	R.IGSIVANR.Q	2 2 2

Similarities: YKL163W(1:1)
YJL158C(1:1)

Reverse_YER019W

4.6%

477

53941

7.5

ISC1 SGDID:S000000821, Chr V from 192796-194229, Verified ORF, "Inositol phosphosphingolipid phospholipase C, hydrolyzes inositolphosphosphingolipids, activated by phosphatidylserine, cardiolipin, and phosphatidylglycerol, mediates Na+ and Li+ halotolerance, contains a P loop-like domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_28.17867.17867.3	2.6162	0.1167	92.7%	2767.6443	2765.9263	224	3.337	23.8%	1	R.WTNLLSDCTTCGKLLQQLPSLR.A	3

YKL032C

4.5%

597

67856

8.1

IXR1 SGDID:S000001515, Chr XI from 381501-379708, reverse complement, Verified ORF, "Protein that binds DNA containing intrastrand cross-links formed by cisplatin, contains two HMG (high mobility group box) domains, which confer the ability to bend cisplatin-modified DNA; mediates aerobic transcriptional repression of COX5b"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_37.23087.23087.4	2.9935	0.1737	98.5%	3573.5366	3577.8052	26	3.856	23.1%	1	K.LASARWKELTDDQKKPFYEEFRTNWEK.Y	4

Reverse_YCR079W

4.5%

442

49421

7.0

YCR079W SGDID:S000002133, Chr III from 252841-254169, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_28.25020.25020.2	1.6968	0.1367	96.2%	2303.412	2305.4695	242	3.751	28.9%	1	K.NTIGDT*VLALFCEDGNFPLK.S	2

Reverse_YOL021C

4.4%

1001

113707

6.7

DIS3 SGDID:S000005381, Chr XV from 285426-282421, reverse complement, Verified ORF, "Nucleolar exosome component, involved in rRNA processing and RNA degradation, binds Gsp1p/Ran and enhances the GEF activity of Srm1p, implicated in mitotic control, homologous to the E. coli RNase R of the RNase II family"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_17.18518.18518.3	3.0023	0.1248	96.9%	3119.9343	3122.481	113	3.613	21.2%	1	K.AHLADDIDVCGPPDISCILKDRLDKRK.T	3
*	Jamie_01_itms_51.31507.31507.2	1.5348	0.0917	91.1%	1974.1122	1974.3602	8	4.327	37.5%	1	R.VFVKQTVSLGDALRKRR.P	2

Reverse_YPL180W

4.4%

799

88845

8.1

TCO89 SGDID:S000006101, Chr XVI from 205247-207646, Verified ORF, "Subunit of TORC1 (Tor1p or Tor2p-Kog1p-Lst8p-Tco89p), a complex that regulates growth in response to nutrient availability; cooperates with Ssd1p in the maintenance of cellular integrity; deletion strains are hypersensitive to rapamycin"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_51.32005.32005.2	1.532	0.0847	90.2%	1838.7722	1838.1172	22	3.201	37.5%	1	K.QNSKHAALTNGVDLIKK.E	2
*	Jamie_01_itms_42.26579.26579.2	1.9757	0.1144	96.5%	1958.7722	1957.9597	75	3.459	32.4%	1	K.SQHSVT*SANLSTVDTDSK.L	2

YOL065C

4.4%

384

43799

7.6

INP54 SGDID:S000005426, Chr XV from 205884-204730, reverse complement, Verified ORF, "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase with a role in secretion, localizes to the endoplasmic reticulum via the C-terminal tail; lacks the Sac1 domain and proline-rich region found in the other 3 INP proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_68.41947.41947.2	1.9116	0.2894	100.0%	2091.4321	2091.18	32	4.613	34.4%	1	K.RIMS*EVCDSEVAKSDHF.F	2

YFR009W

4.3%

752

85027

6.2

GCN20 SGDID:S000001905, Chr VI from 162482-164740, Verified ORF, "Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_16.10868.10868.4	4.635	0.2304	100.0%	3662.7366	3662.0	32	4.062	21.5%	1	I.DAGASKAKVKELSESILKQLTTQLKENEAKLE.L	4

YOL086C

4.3%

348

36849

6.7

ADH1 SGDID:S000005446, Chr XV from 160593-159547, reverse complement, Verified ORF, "Alcohol dehydrogenase, fermentative isozyme active as homo- or heterotetramers; required for the reduction of acetaldehyde to ethanol, the last step in the glycolytic pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06457.06457.2	2.2191	0.3006	100.0%	1619.8722	1619.815	27	5.386	42.9%	1	R.VLGIDGGEGKEELFR.S	2

YKR095W

1875

218454

5.2

MLP1 SGDID:S000001803, Chr XI from 619447-625074, Verified ORF, "Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved with Tel1p in telomere length control; involved with Pml1p and Pml39p in nuclear retention of unspliced mRNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06444.06444.2	2.147	0.2695	100.0%	1344.4321	1343.4302	33	5.363	54.5%	1	K.DYESVITSVDSK.Q	2
*	Jamie_01_itms_21.13873.13873.4	4.8562	0.3585	100.0%	3120.9365	3122.3232	1	6.419	30.0%	1	K.HEQLSSSDYEKLESEIENLKEELENK.E	4
*	Jamie_01_itms_7.05323.05323.2	3.8196	0.266	100.0%	2080.5723	2080.2993	1	7.518	63.3%	1	R.KKEELEKEFEEKVEER.I	2
*	Jamie_01_itms_6.04917.04917.3	3.4081	0.1707	99.2%	2760.0842	2761.87	12	4.035	28.3%	1	K.RPIDEVGELKNDEDDTTENINESK.K	3
*	Jamie_01_itms_6.04583.04583.4	6.6738	0.5133	100.0%	2889.7366	2890.0442	1	8.269	34.0%	1	K.RPIDEVGELKNDEDDTTENINESKK.I	4

Reverse_YGR237C

785

89241

9.1

YGR237C SGDID:S000003469, Chr VII from 965660-963303, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_26.16549.16549.4	3.3809	0.0526	95.6%	3963.6565	3964.3164	148	3.733	18.2%	1	R.SNRSEIPTLKRGSSDYKMLTNDDLLVQRSPKPR.V	4

Reverse_YLL001W

757

84972

5.5

DNM1 SGDID:S000003924, Chr XII from 147889-150162, Verified ORF, "Dynamin-related GTPase required for mitochondrial fission and the maintenance of mitochondrial morphology, assembles on the cytoplasmic face of mitochondrial tubules at sites at which division will occur; also participates in endocytosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_45.28349.28349.4	2.9852	0.0689	91.5%	3995.5366	4001.464	396	3.209	19.4%	1	K.DRIHSLLTQNLLKALYRTGCKTSITRYVPHKR.F	4

YKR067W

743

83645

9.5

GPT2 SGDID:S000001775, Chr XI from 567560-569791, Verified ORF, "Glycerol-3-phosphate acyltransferase located in both lipid particles and the ER; involved in the stepwise acylation of glycerol-3-phosphate and dihydroxyacetone, which are intermediate steps in lipid biosynthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26540.26540.4	3.7883	0.3878	100.0%	3656.1765	3657.2913	1	6.001	22.8%	1	E.IGVDLFKS*LRPLFVSIVYPGKKIEEIQTTRK.N	4

YGR282C

313

34119

4.5

BGL2 SGDID:S000003514, Chr VII from 1058730-1057789, reverse complement, Verified ORF, "Endo-beta-1,3-glucanase, major protein of the cell wall, involved in cell wall maintenance"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06640.06640.2	2.4588	0.1721	99.4%	1485.0322	1485.5878	12	4.275	54.2%	1	K.STSDYETELQALK.S	2

YGL201C

4.1%

1017

112978

5.2

MCM6 SGDID:S000003169, Chr VII from 120911-117858, reverse complement, Verified ORF, "Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_7.05305.05305.4	3.4569	0.0704	96.9%	4273.8564	4270.3716	28	2.669	18.7%	1	-.MSSPFPADTPSSNRPSNSSPPPSSIGAGFGSSSGLDSQIGSR.L	4

Reverse_YER167W

851

93738

7.9

BCK2 SGDID:S000000969, Chr V from 518211-520766, Verified ORF, "Protein rich in serine and threonine residues involved in protein kinase C signaling pathway, which controls cell integrity; overproduction suppresses pkc1 mutations"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26484.26484.4	3.3349	0.0399	93.1%	4231.8564	4230.497	166	2.927	18.7%	1	R.RYYHPIKWKNTSETSRSKTSNVSSSRHHHSNKPM.-	4

Reverse_YOL070C

501

55923

5.8

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_45.27977.27977.2	1.6487	0.0898	92.2%	1973.6921	1976.0209	105	2.858	28.9%	1	K.TNYTSSGSESALNGSGISSR.M	2

Reverse_YDR516C

500

55921

6.3

EMI2 SGDID:S000002924, Chr IV from 1476466-1474964, reverse complement, Verified ORF, "Non-essential protein of unknown function required for transcriptional induction of the early meiotic-specific transcription factor IME1, also required for sporulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_28.18203.18203.2	1.9942	0.0468	91.4%	2535.5723	2533.7576	6	3.457	31.6%	1	K.REEFTTPLRLSQLFS*LETER.L	2

YMR133W

428

48706

9.2

REC114 SGDID:S000004740, Chr XIII from 536206-537447,537564-537608, Verified ORF, "Protein involved in early stages of meiotic recombination; possibly involved in the coordination of recombination and meiotic division; mutations lead to premature initiation of the first meiotic division"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_10.07077.07077.2	1.4024	0.1243	92.6%	1951.6322	1951.1038	30	3.482	37.5%	1	K.EASPSEGLT*IRVKNVNR.N	2

Reverse_YLR150W

273

29995

9.7

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_61.37449.37449.2	1.4466	0.1173	93.0%	1255.1122	1252.243	1	3.365	55.0%	1	K.DRIAGENGS*PR.P	2

U	Reverse_YMR042W	1	1	4.0%	177	19488	5.3	ARG80 SGDID:S000004645, Chr XIII from 352602-353135, Verified ORF, "Transcription factor involved in regulation of arginine-responsive genes; acts with Arg81p and Arg82p"
U	Reverse_YMR043W	1	1	2.4%	286	32802	5.1	MCM1 SGDID:S000004646, Chr XIII from 353870-354730, Verified ORF, "Transcription factor involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_01_itms_2.01111.01111.2	1.5623	0.0808	92.5%	981.33215	983.0317	6	3.318	83.3%	1	K.S*FTVHRR.T	2

YMR288W

971

110028

7.3

HSH155 SGDID:S000004901, Chr XIII from 845570-848485, Verified ORF, "U2-snRNP associated splicing factor that forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_27.17271.17271.4	4.2987	0.2184	100.0%	4450.2563	4451.047	82	4.558	17.6%	1	R.SHRGKVLSSFLKAVGSMIPLMDPEYAGYYTTEAMRIIR.R	4

YML111W

920

104786

8.0

BUL2 SGDID:S000004579, Chr XIII from 46942-49704, Verified ORF, "Component of the Rsp5p E3-ubiquitin ligase complex, involved in intracellular amino acid permease sorting, functions in heat shock element mediated gene expression, essential for growth in stress conditions, functional homolog of BUL1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_29.25905.25905.4	2.6848	0.1259	93.7%	3900.3765	3903.1216	248	3.454	18.1%	1	K.SNSSLFSHFLSSSETGSSSTGPHVYNSGLIVLSVKK.P	4

YER077C

688

79548

9.4

YER077C SGDID:S000000879, Chr V from 316596-314530, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_14.09535.09535.4	3.2361	0.0377	91.4%	2966.9365	2967.3708	6	3.011	25.0%	1	-.MGLKITKGQLRTKDLNQSSSKSSQSSR.I	4

Reverse_YDR051C

334

39172

7.3

YDR051C SGDID:S000002458, Chr IV from 558057-557053, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_43.26844.26844.2	1.6987	0.0814	92.5%	1545.8322	1544.5339	1	3.261	54.2%	1	R.DY*VDAASEGHPFR.F	2

U	YDR038C	1	1	3.8%	1091	120296	5.5	ENA5 SGDID:S000002445, Chr IV from 530693-527418, reverse complement, Verified ORF, "Protein with similarity to P-type ATPase sodium pumps"
U	YDR040C	1	1	3.8%	1091	120357	5.6	ENA1 SGDID:S000002447, Chr IV from 538463-535188, reverse complement, Verified ORF, "P-type ATPase sodium pump, involved in Na+ and Li+ efflux to allow salt tolerance"
U	YDR039C	1	1	3.8%	1091	120317	5.5	ENA2 SGDID:S000002446, Chr IV from 534578-531303, reverse complement, Verified ORF, "P-type ATPase sodium pump, involved in Na+ efflux to allow salt tolerance; likely not involved in Li+ efflux"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_02_itms_22.21614.21614.4	3.3109	0.0514	94.5%	4519.8965	4522.3467	108	2.951	15.8%	1	K.RVAIYAICVALSMIPSSLVVVLTITMSVGAAVMVSRNVIVR.K	4

Reverse_YMR290C

3.8%

505

56718

9.3

HAS1 SGDID:S000004903, Chr XIII from 851590-850073, reverse complement, Verified ORF, "ATP-dependent RNA helicase; localizes to both the nuclear periphery and nucleolus; highly enriched in nuclear pore complex fractions; constituent of 66S pre-ribosomal particles"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_30.19270.19270.3	2.3668	0.1605	94.8%	2092.7644	2093.2578	18	4.193	29.2%	1	K.GSAGITINVKPPVPFGYSK.A	3

Reverse_YBR003W

3.8%

473

52560

8.8

COQ1 SGDID:S000000207, Chr II from 242811-244232, Verified ORF, "Hexaprenyl pyrophosphate synthetase, catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_31.27291.27291.2	1.493	0.164	96.3%	2060.5923	2061.2192	172	3.992	29.4%	1	K.AIGNHLRVSDIT*KEVDGR.E	2

Reverse_YHL002W

3.8%

452

51161

6.4

HSE1 SGDID:S000000994, Chr VIII from 102607-103965, Verified ORF, "Subunit of the endosomal Vps27p-Hse1p complex required for sorting of ubiquitinated membrane proteins into intralumenal vesicles prior to vacuolar degradation, as well as for recycling of Golgi proteins and formation of lumenal membranes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_10.06951.06951.2	1.4716	0.0989	91.0%	1961.9922	1962.9966	296	3.193	34.4%	1	K.QLEEDDSNDAQTSMNHK.E	2

Reverse_YPR007C

3.7%

680

77202

5.2

REC8 SGDID:S000006211, Chr XVI from 571375-569333, reverse complement, Verified ORF, "Meiosis-specific component of sister chromatid cohesion complex; maintains cohesion between sister chromatids during meiosis I; maintains cohesion between centromeres of sister chromatids until meiosis II; homolog of S. pombe Rec8p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_17.11161.11161.4	2.93	0.1214	96.3%	2986.8965	2985.0732	200	3.342	24.3%	1	R.FSKRGYEHSRTSSSSQTSVLSHARK.R	4

YGL209W

3.7%

382

42048

9.7

MIG2 SGDID:S000003177, Chr VII from 95862-97010, Verified ORF, "Protein containing zinc fingers, involved in repression, along with Mig1p, of SUC2 (invertase) expression by high levels of glucose; binds to Mig1p-binding sites in SUC2 promoter"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06644.06644.2	2.1777	0.0876	96.4%	1535.4122	1534.9291	403	3.095	42.3%	1	K.LSGVKLPPVRNLLK.Q	4 2

Reverse_YGR094W

1104

125770

7.0

VAS1 SGDID:S000003326, Chr VII from 672190-675504, Verified ORF, "Mitochondrial and cytoplasmic valyl-tRNA synthetase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_38.24189.24189.4	3.2414	0.0839	96.4%	4551.4565	4557.2515	356	3.094	15.4%	1	K.KPKKQSAGTTAAANKKAQKAAFKLLKEAKKKEKEIEKPTK.P	4

Reverse_YNL161W

756

86946

7.9

CBK1 SGDID:S000005105, Chr XIV from 332599-334869, Verified ORF, "Serine/threonine protein kinase that regulates cell morphogenesis pathways; involved in cell wall biosynthesis, apical growth, proper mating projection morphology, bipolar bud site selection in diploid cells, and cell separation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_26.16720.16720.3	2.7666	0.1156	93.8%	2949.0842	2947.0557	1	3.258	26.9%	1	K.NATDTTNANYTGPKS*IGNTAEDQQLLK.K	3

YHR031C

723

81581

9.7

RRM3 SGDID:S000001073, Chr VIII from 172963-170792, reverse complement, Verified ORF, "DNA helicase involved in rDNA replication and Ty1 transposition; structurally and functionally related to Pif1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_33.20758.20758.4	2.8518	0.0898	92.3%	3046.7766	3050.1921	165	3.134	22.0%	1	R.EVTSVKSNSRQLSFTSTINIEDSSMK.L	4

Reverse_YOR027W

589

66265

5.6

STI1 SGDID:S000005553, Chr XV from 381052-382821, Verified ORF, "Hsp90 cochaperone, interacts with the Ssa group of the cytosolic Hsp70 chaperones; activates the ATPase activity of Ssa1p; homolog of mammalian Hop protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_11.14526.14526.3	2.1303	0.1972	92.9%	2582.3643	2584.6384	6	4.07	26.2%	1	K.SWSPNIKVCENADNLADSFKK.L	3

YPL042C

555

62847

9.6

SSN3 SGDID:S000005963, Chr XVI from 474704-473037, reverse complement, Verified ORF, "Cyclin-dependent protein kinase, component of RNA polymerase II holoenzyme; involved in phosphorylation of the RNA polymerase II C-terminal domain; involved in glucose repression"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_43.26754.26754.2	1.702	0.0932	93.0%	2093.0122	2096.0024	291	3.573	28.9%	1	R.QINSGTNSANGSSLNGTNAK.I	2

Reverse_YHR159W

504

56314

8.3

YHR159W SGDID:S000001202, Chr VIII from 417552-419066, Uncharacterized ORF, "Protein of unknown function that localizes to the cytoplasm, potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_57.35547.35547.2	1.4645	0.1036	91.1%	1963.3922	1963.0275	37	3.028	35.3%	1	R.HGSEDTLSNNGANDKQFK.T	2

YGR279C

386

40173

4.8

SCW4 SGDID:S000003511, Chr VII from 1049964-1048804, reverse complement, Verified ORF, "Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_10.06838.06838.2	2.7938	0.308	100.0%	1686.7322	1687.8126	3	6.401	53.8%	1	R.LYGTDCNQVENVFK.A	2

YDL126C

835

91996

4.9

CDC48 SGDID:S000002284, Chr IV from 238664-236157, reverse complement, Verified ORF, "ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p and Ufd1p participates in retrotranslocation of ubiquitinated proteins from the ER into the cytosol for degradation by the proteasome"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_11.07796.07796.3	3.4896	0.116	98.5%	3208.2844	3206.456	10	3.399	24.1%	1	K.VEGEDVEMTDEGAKAEQEPEVDPVPYITK.E	3

Reverse_YBL067C

747

83865

6.2

UBP13 SGDID:S000000163, Chr II from 95884-93641, reverse complement, Verified ORF, "Putative ubiquitin-specific protease"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_32.20474.20474.4	2.826	0.1084	94.1%	2812.4966	2814.8503	166	3.245	24.0%	1	K.KESPGATNSNVSNVPTPKGDDVSQPK.P	4

YML057W

604

68528

6.4

CMP2 SGDID:S000004521, Chr XIII from 160180-161994, Verified ORF, "Calcineurin A; one isoform (the other is CNA1) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_8.06091.06091.3	2.4955	0.1169	90.2%	2348.4543	2352.4368	105	3.365	26.2%	1	R.GALSNGVKGLDEALSTFERAR.K	3

Reverse_YGL194C

452

51455

5.2

HOS2 SGDID:S000003162, Chr VII from 141732-140374, reverse complement, Verified ORF, "Histone deacetylase required for gene activation via specific deacetylation of lysines in H3 and H4 histone tails; subunit of the Set3 complex, a meiotic-specific repressor of sporulation specific genes that contains deacetylase activity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_36.22933.22933.2	1.7017	0.1938	98.3%	2011.3121	2014.0851	250	3.637	30.0%	1	-.SFAILGSNEKEMEELR.N	2

YBL058W

423

46987

5.0

SHP1 SGDID:S000000154, Chr II from 111439-112710, Verified ORF, "UBX (ubiquitin regulatory X) domain-containing protein that regulates Glc7p phosphatase activity and interacts with Cdc48p; interacts with ubiquitylated proteins in vivo and is required for degradation of a ubiquitylated model substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_1.00837.00837.3	2.6842	0.1199	96.9%	1559.4243	1560.7561	3	3.948	42.9%	1	K.APTRKLGGFSGQGQR.L	3

YER151C

912

101917

7.8

UBP3 SGDID:S000000953, Chr V from 472419-469681, reverse complement, Verified ORF, "Ubiquitin-specific protease that interacts with Bre5p to co-regulate anterograde and retrograde transport between endoplasmic reticulum and Golgi compartments; inhibitor of gene silencing; cleaves ubiquitin fusions but not polyubiquitin"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_49.30552.30552.3	2.5659	0.1226	90.7%	3268.1643	3265.3281	11	3.689	20.8%	1	K.KKWHSNGIT*NNNGSSGNQGANSSGSGMSYNK.S	3

Reverse_YHR096C

592

66252

7.6

HXT5 SGDID:S000001138, Chr VIII from 296450-294672, reverse complement, Verified ORF, "Hexose transporter with moderate affinity for glucose, may function in accumulation of reserve carbohydrates during stress, expression induced by a decrease in growth rate, contains an extended N-terminal domain relative to other HXTs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21465.21465.2	1.8511	0.0979	95.1%	2095.0522	2098.0178	228	3.088	26.3%	1	K.AQALNDNYGATGPATSNGSK.E	2

Reverse_YHR007C

530

60720

8.7

ERG11 SGDID:S000001049, Chr VIII from 121678-120086, reverse complement, Verified ORF, "Lanosterol 14-alpha-demethylase, catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_19.12303.12303.2	1.8684	0.0675	92.3%	2131.6921	2129.3525	51	3.107	32.4%	1	R.EKILSMY*TGSIAKQAHDR.K	2

YPR047W

469

54829

8.0

MSF1 SGDID:S000006251, Chr XVI from 657526-658935, Verified ORF, "Mitochondrial phenylalanyl-tRNA synthetase alpha subunit, active as a monomer, unlike the cytoplasmic subunit which is active as a dimer complexed to a beta subunit dimer; similar to the alpha subunit of E. coli phenylalanyl-tRNA synthetase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_22.21468.21468.2	1.7464	0.0774	92.2%	1905.5521	1905.0258	14	3.552	36.7%	1	K.YKTDPQTTNVTDS*IIK.L	2

YPL268W

869

100547

9.1

PLC1 SGDID:S000006189, Chr XVI from 35236-37845, Verified ORF, "Phosphoinositide-specific phospholipase C, hydrolyzes phosphatidylinositol 4,5-biphosphate (PIP2) to generate inositol 1,4,5-triphosphate (IP3) and 1,2-diacylglycerol (DAG); involved in kinetochore function and pseudohyphal differentiation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21391.21391.3	2.8045	0.1468	96.8%	3257.6343	3258.495	78	3.447	20.5%	1	K.VEFHTDDEPTMPISIDKGTRIS*ATEASTK.S	3

YBR133C

827

95153

6.4

HSL7 SGDID:S000000337, Chr II from 504281-501798, reverse complement, Verified ORF, "Protein arginine N-methyltransferase that exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_8.05755.05755.3	2.8767	0.2775	99.8%	3127.1343	3127.3948	2	5.25	26.0%	1	K.STKALEPSNELPRHEDLEEDVPEVHVR.V	3
*	Jamie_01_itms_9.06205.06205.3	3.4144	0.1978	99.6%	2809.5244	2811.0374	12	4.541	29.3%	2	K.ALEPSNELPRHEDLEEDVPEVHVR.V	3
*	Jamie_01_itms_6.04667.04667.2	2.6153	0.2617	100.0%	1702.8322	1703.8058	2	4.405	65.4%	1	R.HEDLEEDVPEVHVR.V	2

Reverse_YPL074W

754

85300

9.6

YTA6 SGDID:S000005995, Chr XVI from 415760-418024, Verified ORF, "Putative ATPase of the CDC48/PAS1/SEC18 (AAA) family, localized to the cortex of mother cells but not to daughter cells"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_15.17224.17224.3	2.7128	0.1034	91.3%	2777.5745	2777.0232	12	3.383	26.0%	1	R.AADDIAWPLNTAGLVLVRSDLT*NNR.D	3

YLR020C

538

62447

8.4

YEH2 SGDID:S000004010, Chr XII from 183404-181788, reverse complement, Verified ORF, "Steryl ester hydrolase, catalyzes steryl ester hydrolysis at the plasma membrane; involved in sterol metabolism"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_15.10219.10219.2	1.6909	0.1045	93.8%	2275.872	2275.5034	106	2.988	32.4%	1	K.AFVRLMAKGIDSPWYFGR.R	2

YGR059W

512

59845

7.4

SPR3 SGDID:S000003291, Chr VII from 607567-609105, Verified ORF, "Sporulation-specific homolog of the yeast CDC3/10/11/12 family of bud neck microfilament genes; septin protein involved in sporulation; regulated by ABFI"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_31.19810.19810.2	2.0122	0.1471	98.2%	1869.0922	1868.9702	16	4.064	37.5%	1	K.NGIDFTLMVAGQSGLGK.T	2

Reverse_YNL124W

492

54950

4.8

NAF1 SGDID:S000005068, Chr XIV from 392894-394372, Verified ORF, "Protein required for the assembly of box H/ACA snoRNPs and for pre-rRNA processing, forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; has similarity to Gar1p and other RNA-binding proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26138.26138.2	1.7237	0.1404	96.8%	1950.2522	1953.0793	1	3.694	43.3%	1	K.VKVNDS*DNALKRNDRK.K	2

YBR059C

1108

123989

7.7

AKL1 SGDID:S000000263, Chr II from 360185-356859, reverse complement, Verified ORF, "Ser-Thr protein kinase, member (with Ark1p and Prk1p) of the Ark kinase family; involved in endocytosis and actin cytoskeleton organization"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_38.24092.24092.4	3.2244	0.0504	93.0%	4194.5767	4194.3916	137	2.508	18.6%	1	K.SKDFSSVSTRQPRQSLDLNFQEVNLSSPTLTQEHR.N	4

Reverse_YER041W

759

87390

7.2

YEN1 SGDID:S000000843, Chr V from 232460-234739, Verified ORF, "Protein of unknown function, has similarity to endonuclease Rth1p; potentially phosphorylated by Cdc28p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_11.07480.07480.4	3.0908	0.1848	98.6%	2874.9365	2880.0105	46	3.908	26.8%	1	R.SPSHSTISSPGFDDYFKSYNKLIK.E	4

Reverse_YGR178C

722

78781

6.9

PBP1 SGDID:S000003410, Chr VII from 853220-851052, reverse complement, Verified ORF, "Protein interacting with poly(A)-binding protein Pab1p; likely involved in control of the extent of mRNA polyadenylation; also interacts with Mkt1p to form a complex that may regulate translation of the HO mRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_22.14548.14548.4	3.3534	0.046	95.1%	2856.6565	2856.1675	1	3.498	28.0%	1	K.NIDFHEAGEEPTWKELKREKIER.G	4

Reverse_YMR145C

560

62774

9.3

NDE1 SGDID:S000004753, Chr XIII from 556474-554792, reverse complement, Verified ORF, "Mitochondrial external NADH dehydrogenase, catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_27.24454.24454.2	1.7968	0.0983	94.3%	2241.2122	2242.4592	40	3.604	29.4%	1	K.KDELLNRAAHFS*RNKAYK.V	2

YNL289W

279

32095

9.3

PCL1 SGDID:S000005233, Chr XIV from 87897-88736, Verified ORF, "Pho85 cyclin of the Pcl1,2-like subfamily, involved in entry into the mitotic cell cycle and regulation of morphogenesis, localizes to sites of polarized cell growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_5.04083.04083.2	2.1341	0.0076	91.2%	1043.4722	1043.0447	53	2.627	68.8%	1	R.TCAGTS*PIR.S	2

Reverse_YOL100W

1081

121660

9.6

PKH2 SGDID:S000005460, Chr XV from 129236-132481, Verified ORF, "Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls endocytosis; activates Ypk1p and Ykr2p, components of signaling cascade required for maintenance of cell wall integrity; redundant with Pkh1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_14.16415.16415.2	1.6408	0.1516	97.5%	1631.2722	1628.5663	39	3.809	42.3%	1	K.YTGPRSTTAPSSSR.S	2
*	Jamie_02_itms_2.05891.05891.2	1.9653	0.0624	92.8%	1876.4321	1875.9474	22	4.173	36.1%	1	K.TLAASAALAASAAGSPTRK.G	2

YLL024C

639

69470

5.1

SSA2 SGDID:S000003947, Chr XII from 97484-95565, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_7.04974.04974.3	3.6482	0.2742	100.0%	2133.6843	2134.305	2	6.052	36.8%	1	K.NTISEAGDKLEQADKDAVTK.K	3

YOR380W

546

61287

7.8

RDR1 SGDID:S000005907, Chr XV from 1051286-1052926, Verified ORF, "Transcriptional repressor involved in the control of multidrug resistance; negatively regulates expression of the PDR5 gene; member of the Gal4p family of zinc cluster proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_26.23644.23644.2	1.8909	0.0803	93.7%	2195.8523	2197.257	1	3.934	43.8%	1	R.STNPPRLHSFAWHCGIR.P	2

YOR244W

445

52613

7.7

ESA1 SGDID:S000005770, Chr XV from 792531-793868, Verified ORF, "Histone acetyltransferase catalytic subunit of the native multisubunit complex (NuA4) that acetylates four conserved internal lysines of histone H4 N-terminal tail; required for cell cycle progression"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04922.04922.2	2.4812	0.0846	97.9%	1902.0122	1901.9567	19	3.989	50.0%	1	K.KCTLRHPPGNEIYR.D	2

YLR180W

382

41818

5.2

SAM1 SGDID:S000004170, Chr XII from 515264-516412, Verified ORF, "S-adenosylmethionine synthetase, catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; one of two differentially regulated isozymes (Sam1p and Sam2p)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_8.06079.06079.2	2.1503	0.1224	98.2%	1359.0922	1359.5248	19	3.811	63.6%	1	R.DGSLAWLRPDTK.T	2

Reverse_YNL106C

3.0%

1183

133331

8.6

INP52 SGDID:S000005050, Chr XIV from 424497-420946, reverse complement, Verified ORF, "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in endocytosis; hyperosmotic stress causes translocation to actin patches"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_68.42012.42012.4	2.8658	0.1501	97.2%	3970.7366	3971.3323	170	3.731	18.1%	1	R.GEKVDYSFYGADLITNRIKPIIRS*AAAFGDQSTER.H	4

U	YMR186W	1	1	3.0%	705	80900	4.8	HSC82 SGDID:S000004798, Chr XIII from 632354-634471, Verified ORF, "Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels that HSP82 and induced 2-3 fold by heat shock"
U	YPL240C	1	1	3.0%	709	81406	4.9	HSP82 SGDID:S000006161, Chr XVI from 98625-96496, reverse complement, Verified ORF, "Cytoplasmic chaperone (Hsp90 family) required for pheromone signaling and negative regulation of Hsf1p; docks with the mitochondrial import receptor Tom70p for preprotein delivery; interacts with co-chaperones Cns1p, Cpr6p, Cpr7p, and Sti1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_01_itms_14.09507.09507.3	4.2154	0.2715	100.0%	2512.8843	2511.699	1	5.001	36.2%	1	K.TLVDITKDFELEETDEEKAER.E	3

YNR056C

3.0%

561

62428

7.3

BIO5 SGDID:S000005339, Chr XIV from 733303-731618, reverse complement, Verified ORF, "Putative transmembrane protein involved in the biotin biosynthesis pathway; responsible for uptake of 7-keto 8-aminopelargonic acid; BIO5 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_13.16137.16137.2	1.7713	0.0638	90.9%	1888.6122	1890.1461	31	3.235	37.5%	1	K.SYAPFYKEGSLGNKSLK.K	2

YKL172W

3.0%

427

49734

6.4

EBP2 SGDID:S000001655, Chr XI from 125764-127047, Verified ORF, "Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, localizes to the nucleolus; constituent of 66S pre-ribosomal particles"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_30.19092.19092.2	2.1869	0.1356	98.1%	1590.8922	1590.6415	7	4.045	50.0%	1	K.KEEPTIVTASNLK.K	2

YEL025C

1188

136069

8.1

YEL025C SGDID:S000000751, Chr V from 106147-102581, reverse complement, Uncharacterized ORF, "SWI/SNF and RSC interacting protein 1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_28.17859.17859.4	3.2708	0.1054	97.5%	3865.5366	3870.2341	332	3.309	18.7%	1	K.VVCGHTIVVLTTNYTQIINIKASGLTNGAFFNNK.G	4

YEL031W

1215

135268

6.6

SPF1 SGDID:S000000757, Chr V from 90258-93905, Verified ORF, "P-type ATPase, ion transporter of the ER membrane involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_22.14049.14049.4	3.8475	0.2585	91.7%	3915.1765	3912.3904	7	5.019	18.6%	1	K.GMYYGLLGVTGLALASATEFLPELNEAMKFVPMTD.D	4

Reverse_YOL087C

1116

125382

6.7

YOL087C SGDID:S000005447, Chr XV from 158636-155286, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_19.12516.12516.4	3.3487	0.0754	96.5%	3813.0964	3810.0496	177	3.146	19.4%	1	R.CNLDWVNIVGDSSTSILRTSDDLTRVVKINTR.H	4

Reverse_YKR009C

900

98703

9.0

FOX2 SGDID:S000001717, Chr XI from 456697-453995, reverse complement, Verified ORF, "Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_25.16027.16027.3	2.7779	0.1264	95.4%	2735.0942	2738.085	46	3.422	25.0%	1	R.AFWIAHS*KGLGGGAGTVVVVKNCLSK.I	3

Reverse_YNL183C

790

85990

8.4

NPR1 SGDID:S000005127, Chr XIV from 295511-293139, reverse complement, Verified ORF, "Protein kinase that stabilizes several plasma membrane amino acid transporters by antagonizing their ubiquitin-mediated degradation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_28.24851.24851.2	1.2286	0.1261	90.3%	2346.5122	2347.4177	58	4.103	20.5%	1	K.NDSIRQALKVSGGAGAGLDAGTK.I	2

Reverse_YOR076C

747

84779

7.8

SKI7 SGDID:S000005602, Chr XV from 471621-469378, reverse complement, Verified ORF, "Antiviral adaptor protein that mediates interactions via its N-terminus between the exosome and Ski complex (Ski2p, Ski3p, Ski8p) which operate in the 3'-to-5' mRNA-decay pathway; cytoplasmic protein required for degrading nonstop mRNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_8.12592.12592.3	2.7067	0.1176	94.7%	2621.1243	2617.8357	1	3.337	28.6%	1	K.KLASLKLSLSVSHQNPTFDSRK.V	3

Reverse_YNL167C

647

70192

9.3

SKO1 SGDID:S000005111, Chr XIV from 321361-319418, reverse complement, Verified ORF, "Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family that forms a complex with Tup1p and Ssn6p to both activate and repress transcription; cytosolic and nuclear protein involved in the osmotic and oxidative stress responses"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_8.05674.05674.2	1.6476	0.1355	96.0%	2057.652	2059.2004	94	3.619	38.9%	1	K.NNEVDDKQAPATTVASNKR.S	3 2

YDR242W

549

61410

5.4

AMD2 SGDID:S000002650, Chr IV from 946801-948450, Verified ORF, "Putative amidase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_50.30869.30869.2	2.4326	0.227	100.0%	1900.4521	1900.8303	144	3.93	36.7%	1	K.NIDDLCSSSENQITHS*.T	2

YMR064W

518

59748

9.3

AEP1 SGDID:S000004668, Chr XIII from 397902-399458, Verified ORF, "Protein required for expression of the mitochondrial OLI1 gene encoding subunit 9 of F1-F0 ATP synthase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_32.20218.20218.2	1.8781	0.0966	95.4%	1966.4722	1967.2018	13	3.384	42.9%	1	K.LILLINVTEMQLYSR.L	2

Reverse_YNL137C

486

56356

9.6

NAM9 SGDID:S000005081, Chr XIV from 370057-368597, reverse complement, Verified ORF, "Mitochondrial ribosomal component of the small subunit "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_48.30220.30220.2	1.5923	0.0816	90.7%	1861.1322	1859.8204	108	3.846	38.5%	1	K.ETLHEGHYARTEQK.A	2

Reverse_YJL054W

478

54183

5.8

TIM54 SGDID:S000003590, Chr X from 334181-335617, Verified ORF, "Component of the mitochondrial Tim54p-Tim22p complex involved in insertion of polytopic proteins into the inner membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_18.12060.12060.2	1.8936	0.0547	91.5%	1583.5521	1581.7844	276	3.145	38.5%	1	K.RIPKAIPKGS*ESSM.-	2

Reverse_YJL112W

2.8%

714

80032

5.6

MDV1 SGDID:S000003648, Chr X from 205222-207366, Verified ORF, "Peripheral protein of the cytosolic face of the mitochondrial outer membrane, required for mitochondrial fission; interacts with Fis1p and with the dynamin-related GTPase Dnm1p; contains WD repeats"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_43.26788.26788.2	1.7436	0.0846	92.7%	2247.8123	2247.269	34	3.304	28.9%	1	K.SMVDKAGVTGSTGNTDYNLR.E	2

YLL004W

2.8%

616

72077

5.5

ORC3 SGDID:S000003927, Chr XII from 141072-142922, Verified ORF, "Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_32.28822.28822.2	1.7817	0.068	91.5%	2140.1921	2139.1565	76	2.989	34.4%	1	R.SHYTVYPSLPQSNKNDK.H	2

Reverse_YHR202W

2.8%

602

68998

6.2

YHR202W SGDID:S000001245, Chr VIII from 502388-504196, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_53.32772.32772.2	1.6625	0.0858	92.0%	2120.112	2119.3005	7	3.285	34.4%	1	R.IHTHGGFYQIVTNPY*YK.R	2

YHR023W

1928

223634

6.4

MYO1 SGDID:S000001065, Chr VIII from 151659-157445, Verified ORF, "Type II myosin heavy chain, required for wild-type cytokinesis and cell separation; localizes to the actomyosin ring; binds to myosin light chains Mlc1p and Mlc2p through its IQ1 and IQ2 motifs respectively"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_24.15817.15817.2	1.9355	0.0587	92.3%	2141.392	2144.2573	125	2.902	31.6%	1	K.DQSILVTGESGAGKTENT*KK.I	2
*	Jamie_01_itms_35.22399.22399.4	2.8588	0.119	95.9%	3740.7766	3745.8638	213	2.79	18.3%	1	K.RISGNSVETNISSTRRSTSYSDDPLDKEDIIK.K	4

Reverse_YLR278C

1341

151278

8.3

YLR278C SGDID:S000004268, Chr XII from 704026-700001, reverse complement, Uncharacterized ORF, "Protein of unknown function, localizes to the nucleus; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26228.26228.4	3.2118	0.1251	97.9%	3870.8164	3871.858	232	3.513	17.6%	1	K.LNKEQSSPFSLTSSSSSSSSSSSSSTTYSMSSNSIR.S	4

Reverse_YIL156W

1071

123134

7.9

UBP7 SGDID:S000001418, Chr IX from 48091-51306, Verified ORF, "Ubiquitin-specific protease that cleaves ubiquitin-protein fusions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21534.21534.3	2.964	0.1466	97.4%	3161.6943	3157.4717	164	3.732	21.4%	1	R.SKKKKSKVISPENELASVSTSVSAT*PGCR.P	3

YNL278W

1060

118280

8.9

CAF120 SGDID:S000005222, Chr XIV from 113271-116453, Verified ORF, "Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in controlling mRNA initiation, elongation, and degradation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21656.21656.4	3.1414	0.1731	98.4%	3431.4165	3434.5742	63	4.428	21.4%	1	K.VPAAFQSTGLGITPDDDIERQYITEHRSR.H	4

YGR188C

1021

117868

6.7

BUB1 SGDID:S000003420, Chr VII from 875114-872049, reverse complement, Verified ORF, "Protein kinase that forms a complex with Mad1p and Bub3p that is crucial in the checkpoint mechanism required to prevent cell cycle progression into anaphase in the presence of spindle damage, associates with centromere DNA via Skp1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_30.19060.19060.4	3.1913	0.0699	94.9%	3405.8965	3407.6816	387	3.059	20.4%	1	K.KTSIYADQKQSNNPVYKLINTPGRKPER.I	4

YDL240W

1017

116660

8.2

LRG1 SGDID:S000002399, Chr IV from 22823-25876, Verified ORF, "Putative GTPase-activating protein (GAP) involved in the Pkc1p-mediated signaling pathway that controls cell wall integrity; appears to specifically regulate 1,3-beta-glucan synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_11.07706.07706.4	2.6907	0.1038	90.8%	3455.6965	3453.5642	99	3.427	23.7%	1	R.WHIACFTCSSCHKNINPRSLTDPTFNK.E	4

YKL121W

852

96022

8.4

YKL121W SGDID:S000001604, Chr XI from 213786-216344, Uncharacterized ORF, "Putative protein of unknown function"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_24.22457.22457.3	2.9661	0.0891	94.9%	2616.4443	2618.5789	65	3.946	25.0%	1	K.NPIAGGDSGFTCADCGTILNNFR.-	3

YLR095C

812

93446

5.8

IOC2 SGDID:S000004085, Chr XII from 332116-329678, reverse complement, Verified ORF, "Member of a complex (Isw1b) with Isw1p and Ioc4p that exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing, contains a PHD finger motif"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_7.05375.05375.4	2.7867	0.0791	90.6%	2577.8167	2582.75	389	3.334	26.2%	1	R.RSS*RRPQSTLEPSTKSSRPTDK.R	4

YBR214W

527

57187

8.9

SDS24 SGDID:S000000418, Chr II from 651410-652993, Verified ORF, "One of two S. cerevisiae homologs (Sds23p and Sds24p) of the Schizosaccharomyces pombe Sds23 protein, which genetic studies have implicated in APC/cyclosome regulation; may play an indirect role in fluid-phase endocytosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_37.23487.23487.2	1.5453	0.1218	94.2%	1586.9321	1586.7048	398	3.631	38.5%	1	K.QTGNKEVDPQSARR.Q	2

YDL147W

445

51769

6.1

RPN5 SGDID:S000002306, Chr IV from 190925-192262, Verified ORF, "Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_16.10867.10867.2	2.1446	0.0764	96.0%	1449.8522	1452.4349	1	4.012	63.6%	1	K.KTRQASDLASSK.E	2

YLR303W

444

48672

6.4

MET17 SGDID:S000004294, Chr XII from 732544-733878, Verified ORF, "O-acetyl homoserine-O-acetyl serine sulfhydrylase, required for sulfur amino acid synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04665.04665.2	2.8374	0.169	99.8%	1440.4122	1440.506	2	5.385	68.2%	1	R.FVEGDNPEEFEK.V	2

Reverse_YOR153W

1511

170438

7.8

PDR5 SGDID:S000005679, Chr XV from 619840-624375, Verified ORF, "Short-lived membrane ABC (ATP-binding cassette) transporter, actively exports various drugs, expression regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_29.18314.18314.4	3.2925	0.0302	91.1%	4274.177	4268.4307	26	2.65	18.0%	1	K.KIDDGSYGSYSIKTDAGLDFGHTNSSISKLLTTCGSGPR.G	4

Reverse_YIL026C

1150

133009

5.1

IRR1 SGDID:S000001288, Chr IX from 307927-304475, reverse complement, Verified ORF, "Subunit of the cohesin complex, which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms, essential for viability"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_39.24332.24332.4	3.1752	0.0638	94.0%	3444.0566	3438.8665	79	2.879	20.7%	1	R.HVFCLKVINDIISDIVVKSGQT*EAITSELK.E	4

YML065W

914

104400

5.7

ORC1 SGDID:S000004530, Chr XIII from 142210-144954, Verified ORF, "Largest subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_15.10410.10410.3	2.4488	0.1976	96.9%	2733.8643	2734.1436	25	4.049	25.0%	1	K.LIVIAVANTMDLPERQLGNKITS*R.I	2 3

Reverse_YMR001C

705

81031

9.0

CDC5 SGDID:S000004603, Chr XIII from 271136-269019, reverse complement, Verified ORF, "Polo-like kinase with similarity to Xenopus Plx1 and S. pombe Plo1p; found at bud neck, nucleus and SPBs; has multiple functions in mitosis and cytokinesis through phosphorylation of substrates; may be a Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_40.25333.25333.2	2.0162	0.0867	95.8%	2250.7522	2249.5493	161	3.383	29.4%	1	R.SLNAKMY*KAFFDVVELHR.S	2

Reverse_YDR473C

469

55870

8.6

PRP3 SGDID:S000002881, Chr IV from 1405844-1404435, reverse complement, Verified ORF, "Splicing factor, component of the U4/U6-U5 snRNP complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_62.38317.38317.2	1.5952	0.1489	97.1%	1341.1522	1342.4199	331	3.872	45.5%	1	K.EEAPSTGNMDYK.E	2

U	YCR005C	1	1	2.6%	460	51413	6.4	CIT2 SGDID:S000000598, Chr III from 122325-120943, reverse complement, Verified ORF, "Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate, peroxisomal isozyme involved in glyoxylate cycle; expression is controlled by Rtg1p and Rtg2p transcription factors"
U	YPR001W	1	1	2.5%	486	53811	8.6	CIT3 SGDID:S000006205, Chr XVI from 556374-557834, Verified ORF, "Citrate synthase, catalyzes the condensation of acetyl coenzyme A and oxaloacetate to form citrate, mitochondrial isozyme involved in the TCA cycle"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_02_itms_36.32019.32019.2	1.169	0.1749	94.2%	1391.6522	1390.5851	97	3.646	36.4%	1	R.VIPGY*GHAVLRK.T	2

YER164W

1468

168240

6.5

CHD1 SGDID:S000000966, Chr V from 505387-509793, Verified ORF, "Nucleosome remodeling factor that functions in regulation of transcription elongation; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SILK complexes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_3.07209.07209.3	2.371	0.1538	92.4%	2370.5044	2370.4033	7	3.583	28.4%	1	K.SASSSDTTPTPSKKGKGITGSSK.K	3
*	Jamie_01_itms_16.10997.10997.2	2.0262	0.0753	95.2%	1396.0721	1396.3268	1	3.035	58.3%	1	R.QSS*NPSSGSAHEK.E	2

YML076C

944

107560

7.6

WAR1 SGDID:S000004541, Chr XIII from 115347-112513, reverse complement, Verified ORF, "Homodimeric Zn2Cys6 zinc finger transcription factor; binds to a weak acid response element to induce transcription of PDR12 and FUN34, encoding an acid transporter and a putative ammonia transporter, respectively"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_20.12902.12902.3	2.6912	0.1392	95.9%	2746.9443	2748.9153	164	3.748	25.0%	1	R.DDTAAMNLNINSTSYMNESPHEHR.E	3

YMR205C

959

104618

6.7

PFK2 SGDID:S000004818, Chr XIII from 674765-671886, reverse complement, Verified ORF, "Beta subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_6.10898.10898.3	2.6894	0.1777	97.4%	2480.4844	2484.5498	333	3.959	25.0%	1	K.NAVSTKPTPPPAPEASAESGLSSK.V	3

Reverse_YDR285W

875

100035

6.8

ZIP1 SGDID:S000002693, Chr IV from 1032430-1035057, Verified ORF, "Transverse filament protein of the synaptonemal complex; required for normal levels of meiotic recombination and pairing between homologous chromosome during meiosis; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_11.07476.07476.3	2.5928	0.1094	91.0%	2534.7844	2532.7043	125	3.194	26.2%	1	K.KMPSHIAASNNPFLNSTTANKK.P	3

YJL165C

855

95455

8.4

HAL5 SGDID:S000003701, Chr X from 109454-106887, reverse complement, Verified ORF, "Putative protein kinase; overexpression increases sodium and lithium tolerance, whereas gene disruption increases cation and low pH sensitivity and impairs potassium uptake, suggesting a role in regulation of Trk1p and/or Trk2p transporters"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_52.32417.32417.2	2.2238	0.0937	97.2%	2251.9521	2252.1804	4	3.941	35.0%	1	K.QEDSDDTEGKAGTTNDDTSHK.P	2

Reverse_YMR172W

719

79416

8.0

HOT1 SGDID:S000004783, Chr XIII from 605980-608139, Verified ORF, "Transcription factor required for the transient induction of glycerol biosynthetic genes GPD1 and GPP2 in response to high osmolarity; targets Hog1p to osmostress responsive promoters; has similarity to Msn1p and Gcr1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_46.28954.28954.2	1.9259	0.0546	91.9%	2105.8523	2105.2285	42	3.259	32.4%	1	R.YHLDS*NINPKTASEGHLK.R	2

YJL019W

682

79175

5.3

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_1.00647.00647.2	2.3255	0.1703	99.0%	1687.2722	1688.705	1	4.989	53.1%	1	K.NNDLESHSSGATSSPGK.S	2

YGL171W

564

63653

9.1

ROK1 SGDID:S000003139, Chr VII from 182396-184090, Verified ORF, "ATP-dependent RNA helicase of the DEAD box family; required for 18S rRNA synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_28.18192.18192.2	1.7542	0.1308	96.4%	1582.4122	1579.7507	272	3.905	42.3%	1	K.PVIT*NTVEASALRK.S	2

Reverse_YDR352W

317

35179

5.0

YDR352W SGDID:S000002760, Chr IV from 1181792-1182745, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_2.01247.01247.2	2.2407	0.0138	93.6%	1034.7322	1035.1478	102	2.592	71.4%	1	R.KNQNDLFR.C	2

YDR464W

1435

161596

8.9

SPP41 SGDID:S000002872, Chr IV from 1388862-1393169, Verified ORF, "Protein involved in negative regulation of expression of spliceosome components PRP4 and PRP3"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_44.27642.27642.4	2.9089	0.0763	91.1%	3932.6965	3935.3848	350	3.376	18.6%	1	R.PPQEKKKTKSKTSKAASTANKSPASESTSKKKKKK.K	4

YLR425W

1307

149112

6.9

TUS1 SGDID:S000004417, Chr XII from 982890-986813, Verified ORF, "Guanine nucleotide exchange factor (GEF) that functions to modulate Rhop1 activity as part of the cell integrity signaling pathway; multicopy suppressor of tor2 mutation and ypk1 ypk2 double mutation; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21713.21713.4	3.1911	0.1	96.9%	3681.7766	3682.7288	185	3.739	18.8%	1	K.SPFANGFSPNSPKSPRDSSKQQAHFSDESDLR.C	4

YML091C

1202

139348

6.8

RPM2 SGDID:S000004556, Chr XIII from 90731-87123, reverse complement, Verified ORF, "Protein component of mitochondrial RNase P, along with the mitochondrially-encoded RNA subunit RPM1; Rnase P removes 5' extensions from tRNA precursors; Rpm2p is also involved in maturation of RPM1 and in translation of mitochondrial mRNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_24.22628.22628.4	2.6449	0.2284	98.5%	3505.0566	3504.749	169	3.828	22.6%	1	K.GLNKILSYLEESFITSGNDANIEKVREFR.S	4

YKR098C

717

82703

8.4

UBP11 SGDID:S000001806, Chr XI from 634817-632664, reverse complement, Verified ORF, "Ubiquitin-specific protease that cleaves ubiquitin from ubiquitinated proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_21.20743.20743.2	1.7284	0.1174	95.9%	1967.3121	1969.9249	24	3.44	34.4%	1	R.DSSQDSSSSLSKVEKPK.E	2

YBR238C

731

83761

7.5

YBR238C SGDID:S000000442, Chr II from 697297-695102, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26387.26387.2	1.7596	0.0785	92.4%	1934.7522	1934.1284	34	3.557	37.5%	1	R.ASLSAS*ENDMALKLFQK.L	2

YPL265W

608

68098

8.9

DIP5 SGDID:S000006186, Chr XVI from 41043-42869, Verified ORF, "Dicarboxylic amino acid permease, mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate; also a transporter for Gln, Asn, Ser, Ala, and Gly"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_12.08291.08291.2	1.8777	0.2695	100.0%	1446.3722	1445.4393	57	4.911	42.3%	1	R.SSTSTSPSARDDSF.A	2

YIL150C

571

65815

9.7

MCM10 SGDID:S000001412, Chr IX from 62728-61013, reverse complement, Verified ORF, "Essential, chromatin-associated protein involved in the initiation of DNA replication; required for the association of the MCM2-7 complex with replication origins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_33.20992.20992.2	2.0144	0.0623	93.7%	1578.2722	1578.5901	237	3.194	45.8%	1	R.TTESALQTGLIQR.L	2

YBR127C

517

57749

5.1

VMA2 SGDID:S000000331, Chr II from 492816-491263, reverse complement, Verified ORF, "Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_4.03584.03584.2	2.6973	0.2593	100.0%	1346.8522	1347.427	1	5.186	68.2%	1	K.DHGDVSNQLYAK.Y	2

Reverse_YPR189W

1432

163725

5.4

SKI3 SGDID:S000006393, Chr XVI from 912660-916958, Verified ORF, "Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski2p and Ski8p; required for repressing propagation of dsRNA viruses"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_43.26870.26870.4	3.5541	0.0069	92.3%	3540.8965	3539.0662	344	2.54	20.0%	1	K.TLPLHVGLDKINY*AILSIGNKIYPLAAEYEK.T	4

YKR082W

1157

133320

5.1

NUP133 SGDID:S000001790, Chr XI from 592467-595940, Verified ORF, "Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), localizes to both sides of the NPC, required to establish a normal nucleocytoplasmic concentration gradient of the GTPase Gsp1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_19.12617.12617.3	3.747	0.1856	100.0%	3158.0645	3160.6458	26	3.974	25.0%	1	K.KLNDLIFRFPQQHDVLIQFFQESAPK.Y	4 3

YGR047C

1025

120229

5.3

TFC4 SGDID:S000003279, Chr VII from 589473-586396, reverse complement, Verified ORF, "One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA domain of TFIIIC that binds BoxA DNA promoter sites of tRNA and similar genes; has TPR motifs; human homolog is TFIIIC-102"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21535.21535.3	2.622	0.1488	96.1%	2808.9543	2806.1575	300	3.629	27.3%	1	R.EASNFKVKKKKKNDKGKSY*GRQR.K	3

YOL084W

991

112546

8.6

PHM7 SGDID:S000005444, Chr XV from 162355-165330, Verified ORF, "Protein of unknown function, expression is regulated by phosphate levels; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_4.03658.03658.4	2.9961	0.1566	98.4%	2505.7366	2505.4358	384	3.885	25.4%	1	K.SSTLSSSTKDNNESTFVPEGEK.F	4

YLR347C

861

94776

4.6

KAP95 SGDID:S000004339, Chr XII from 826412-823827, reverse complement, Verified ORF, "Karyopherin beta, forms a dimeric complex with Srp1p (Kap60p) that mediates nuclear import of cargo proteins via a nuclear localization signal (NLS), interacts with nucleoporins to guide transport across the nuclear pore complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_12.08030.08030.2	1.829	0.1284	96.5%	1983.6522	1983.3153	2	3.186	38.9%	1	K.VLEAVLDAYVGIVAGLHDK.P	2

Reverse_YDR251W

830

92872

8.4

PAM1 SGDID:S000002659, Chr IV from 960608-963100, Verified ORF, "Essential protein of unknown function; exhibits variable expression during colony morphogenesis; overexpression permits survival without protein phosphatase 2A, inhibits growth, and induces a filamentous phenotype"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_38.23836.23836.2	1.9756	0.1151	96.9%	1900.6522	1902.8857	201	3.966	35.3%	1	K.NNNNGSTPT*GSPGSYVQK.P	2

YFL047W

714

82208

5.8

RGD2 SGDID:S000001847, Chr VI from 40421-42565, Verified ORF, "GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_44.27549.27549.2	1.6421	0.0869	92.1%	1924.2122	1921.2593	94	3.305	33.3%	1	K.KVVPLIISS*IFSYMDK.I	2

YHR168W

499

55537

9.1

MTG2 SGDID:S000001211, Chr VIII from 440379-441878, Verified ORF, "Putative GTPase, member of the Obg family; peripheral protein of the mitochondrial inner membrane that associates with the large ribosomal subunit; required for mitochondrial translation, possibly via a role in ribosome assembly"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_8.05562.05562.2	2.1709	0.0344	93.1%	1428.7722	1428.5199	324	2.982	55.0%	1	R.EMRKDNNAT*LR.S	2

U	Reverse_YER190W	1	1	2.1%	1681	190502	7.4	YRF1-2 SGDID:S000000992, Chr V from 571475-576520, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"
U	Reverse_YPL283C	1	1	1.9%	1859	211113	7.2	YRF1-7 SGDID:S000006204, Chr XVI from 6007-5989,5840-280, reverse complement, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"
U	Reverse_YNL339C	1	1	1.9%	1859	211097	7.2	YRF1-6 SGDID:S000005283, Chr XIV from 6098-6080,5931-371, reverse complement, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"
U	Reverse_YGR296W	1	1	1.9%	1859	211113	7.2	YRF1-3 SGDID:S000003528, Chr VII from 1084870-1084888,1085037-1090597, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_01_itms_53.33020.33020.4	3.0487	0.0651	92.4%	4284.9766	4279.727	15	3.099	19.1%	1	R.YS*DKLATEQAVEHYLIKIWKWMAVGNNDDFIDLDR.A	4

YER093C

1430

164368

8.7

TSC11 SGDID:S000000895, Chr V from 347608-343316, reverse complement, Verified ORF, "Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p), a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_48.30166.30166.4	3.1483	0.0473	91.4%	3592.1365	3587.9036	26	4.041	21.3%	1	R.NRNTIGMSGIDYAQNIKSFSKNIKENTLLR.E	4

YPR164W

1407

161237

5.9

MMS1 SGDID:S000006368, Chr XVI from 870699-874922, Verified ORF, "Protein likely involved in protection against replication-dependent DNA damage; mutants are sensitive to methyl methanesulfonate (MMS); implicated in regulation of Ty1 transposition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_45.28204.28204.3	2.6098	0.1572	96.1%	3355.0444	3356.6482	24	4.428	20.5%	1	R.RAATIVYEDHVSSRYFEDISSILGST*AMR.T	3

Reverse_YKL015W

979

111414

5.4

PUT3 SGDID:S000001498, Chr XI from 408187-411126, Verified ORF, "Transcriptional activator of proline utilization genes, constitutively binds PUT1 and PUT2 promoter sequences and undergoes a conformational change to form the active state; has a Zn(2)-Cys(6) binuclear cluster domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_60.37088.37088.4	2.8453	0.067	90.6%	2629.5366	2630.8862	42	2.823	28.3%	1	R.QQRKQPQKNVY*APQKSQISHR.S	4

Reverse_YNL041C

839

96976

5.3

COG6 SGDID:S000004986, Chr XIV from 551988-549469, reverse complement, Verified ORF, "Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering complex that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_7.05096.05096.4	2.6702	0.0916	92.8%	2339.4165	2334.5117	86	3.569	33.3%	1	K.ESTRQIKEVSSSLRKIRR.I	4

Reverse_YBR237W

849

96359

8.1

PRP5 SGDID:S000000441, Chr II from 691964-694513, Verified ORF, "RNA helicase in the DEAD-box family, necessary for prespliceosome formation, bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_40.25440.25440.2	1.7224	0.0954	93.3%	2232.7922	2230.3655	125	3.0	29.4%	1	R.EELLSERNINQKSDIT*EM.-	2

YJL090C

764

87241

9.0

DPB11 SGDID:S000003626, Chr X from 264967-262673, reverse complement, Verified ORF, "Essential BRCT repeat protein, required on the prereplicative complex at replication origins for loading DNA polymerases to initiate DNA synthesis, also required for S/M checkpoint control"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06735.06735.2	1.6842	0.0729	90.7%	1797.3522	1799.9353	209	2.956	36.7%	1	K.T*NFSVLGQSPLSINNK.Q	2

Reverse_YPR148C

435

49279

4.8

YPR148C SGDID:S000006352, Chr XVI from 828136-826829, reverse complement, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_2.00986.00986.2	2.1231	0.0475	94.9%	965.89215	965.94635	13	2.846	81.2%	1	K.SEEEAGESK.P	2

YLR419W

1435

163044

9.1

YLR419W SGDID:S000004411, Chr XII from 958424-962731, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_3.07562.07562.4	2.8984	0.1673	98.2%	3404.3765	3404.848	27	3.709	21.6%	1	K.IKLKVYRTKNYPASLPGIVVSTFDKNYK.L	4

YKR064W

863

101825

6.9

YKR064W SGDID:S000001772, Chr XI from 562189-564780, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; detectable in highly purified mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_57.35139.35139.2	1.7464	0.2036	98.9%	2154.4922	2154.4553	20	4.882	40.6%	1	K.MFT*AKIAYKILNRSCEK.D	2

Reverse_YGL083W

804

91001

8.1

SCY1 SGDID:S000003051, Chr VII from 353061-355475, Verified ORF, "Putative kinase, suppressor of GTPase mutant, similar to bovine rhodopsin kinase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_7.11214.11214.2	1.9466	0.102	95.9%	1727.6522	1726.0317	9	3.941	40.0%	1	R.TPFGRTALANKPNLPK.S	2

YOL006C

769

89995

8.7

TOP1 SGDID:S000005366, Chr XV from 315387-313078, reverse complement, Verified ORF, "Topoisomerase I, nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_10.07373.07373.2	1.4381	0.101	90.6%	1946.3722	1948.0543	12	3.322	39.3%	1	K.LEQRIQTSSIQLKDK.E	2

YMR163C

705

81467

8.9

YMR163C SGDID:S000004773, Chr XIII from 586387-584270, reverse complement, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06333.06333.2	1.7713	0.0749	92.4%	1664.3522	1663.6554	46	3.044	46.2%	1	K.SPRSSSVQGLSLER.K	2

YPR008W

694

76671

8.6

HAA1 SGDID:S000006212, Chr XVI from 573015-575099, Verified ORF, "Transcriptional activator involved in the transcription of TPO2, HSP30 and other genes encoding membrane stress proteins; despite sequence similarity with the transcription factor Ace1p, it is not subject to metalloregulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21398.21398.2	1.435	0.1064	91.4%	1468.2922	1466.4583	50	3.226	42.3%	1	R.NFS*TTATAATGESK.F	2

YML031W

655

74134

8.3

NDC1 SGDID:S000004493, Chr XIII from 214189-216156, Verified ORF, "Nuclear envelope protein with multiple putative transmembrane domains, required for nuclear pore complex assembly and spindle pole body duplication; required for meiosis II"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04609.04609.2	2.4444	0.0589	96.2%	1604.2922	1603.787	3	3.778	58.3%	1	K.KVENLDYMYENGK.L	2

U	Reverse_YMR045C	1	1	1.9%	1755	198898	8.3	YMR045C SGDID:S000004648, Chr XIII from 362626-361322,361320-357358, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	Reverse_YMR046C	1	1	7.5%	440	49274	7.9	YMR046C SGDID:S000004649, Chr XIII from 362626-361304, reverse complement, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_02_itms_24.22868.22868.4	2.8729	0.086	91.9%	4211.2563	4208.6387	266	3.44	18.2%	1	R.KSEQQEEYMSHIDSFLDAVTMHICRHRAY*RLFK.Y	4

YBL104C

1038

117636

6.1

YBL104C SGDID:S000000200, Chr II from 21293-18177, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_14.09481.09481.3	3.0238	0.0925	96.5%	2374.4343	2376.5015	66	3.835	28.9%	1	K.TSDVQSAALISIFGSPRYFR.D	3

YFR038W

853

96965

6.3

YFR038W SGDID:S000001934, Chr VI from 229367-231928, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_18.11717.11717.2	2.4391	0.0227	92.9%	1935.1921	1935.9655	9	3.333	50.0%	1	K.SEQKSLDDELSEMDT*K.T	2

Reverse_YBR102C

753

85538

7.9

EXO84 SGDID:S000000306, Chr II from 447317-445056, reverse complement, Verified ORF, "Essential protein with dual roles in spliceosome assembly and exocytosis; the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p) mediates polarized targeting of secretory vesicles to active sites of exocytosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_19.12236.12236.2	1.8594	0.0904	94.5%	1649.4321	1649.7361	18	3.079	53.8%	1	R.GPTISGGMSRRKNK.N	2

YPL029W

737

84324

9.0

SUV3 SGDID:S000005950, Chr XVI from 495504-497717, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Msu1p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_7.11195.11195.2	2.0201	0.2828	100.0%	1720.7122	1721.9512	13	5.143	46.2%	1	G.FITSFESKVLKS*VR.K	2

Reverse_YKL054C

738

83973

5.0

DEF1 SGDID:S000001537, Chr XI from 338397-336181, reverse complement, Verified ORF, "RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and proteolysis of RNAPII"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_10.07310.07310.2	1.7837	0.0978	94.4%	1589.4722	1590.8198	4	3.879	46.2%	1	K.KVEDWRTVAGSTIK.D	2

YOR087W

675

77953

5.4

YVC1 SGDID:S000005613, Chr XV from 487708-489735, Verified ORF, "Vacuolar cation channel, mediates release of Ca(2+) from the vacuole in response to hyperosmotic shock"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_11.07527.07527.2	1.9693	0.2537	94.4%	1607.8121	1610.5603	12	5.261	41.7%	1	M.HCTTVIGSSGFQR.C	2

Reverse_YKR031C

1683

195203

7.6

SPO14 SGDID:S000001739, Chr XI from 506037-500986, reverse complement, Verified ORF, "Phospholipase D, catalyzes the hydrolysis of phosphatidylcholine, producing choline and phosphatidic acid; involved in Sec14p-independent secretion; required for meiosis and spore formation; differently regulated in secretion and meiosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_18.11947.11947.4	3.3702	0.053	95.3%	3636.1765	3639.8872	472	3.014	20.6%	1	K.LYANQISCETEKLGLS*WNGASRLIQTECTSK.E	4

YOR098C

1076

113581

9.6

NUP1 SGDID:S000005624, Chr XV from 511178-507948, reverse complement, Verified ORF, "Nuclear pore complex (NPC) subunit, involved in protein import/export and in export of RNAs, possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_21.13823.13823.3	2.3509	0.1872	96.5%	2111.7244	2113.245	10	3.404	33.3%	1	K.PS*FSFPGKPVDVQAPTDDK.T	3

Reverse_YEL061C

1000

113311

8.1

CIN8 SGDID:S000000787, Chr V from 39537-36535, reverse complement, Verified ORF, "Kinesin motor protein involved in mitotic spindle assembly and chromosome segregation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04863.04863.3	2.5187	0.1004	90.2%	2318.0645	2322.468	1	3.436	33.8%	1	K.YLTITFITHSRSSFDNMK.T	3

YNL243W

968

108996

5.5

SLA2 SGDID:S000005187, Chr XIV from 188052-190958, Verified ORF, "Transmembrane actin-binding protein involved in membrane cytoskeleton assembly and cell polarization; adaptor protein that links actin to clathrin and endocytosis; present in the actin cortical patch of the emerging bud tip; dimer in vivo"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_55.34111.34111.2	1.5161	0.1183	93.4%	1808.0122	1811.0018	47	2.975	34.4%	1	R.TPTPTPPVVAEPAIS*PR.P	2

YDL154W

901

102209

5.3

MSH5 SGDID:S000002313, Chr IV from 178335-181040, Verified ORF, "Protein of the MutS family, forms a dimer with Msh4p that facilitates crossovers between homologs during meiosis; msh5-Y823H mutation confers tolerance to DNA alkylating agents; homologs present in C. elegans and humans"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_25.22926.22926.2	1.463	0.1252	93.3%	1960.7522	1958.0154	229	3.591	33.3%	1	K.TLTINT*GVDNRLDECR.N	2

Reverse_YAL011W

625

72514

9.2

SWC3 SGDID:S000000009, Chr I from 132202-134079, Verified ORF, "Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_6.10390.10390.2	1.8924	0.0788	94.8%	1395.4122	1396.5093	11	3.51	60.0%	1	R.RS*RTRTRSAPK.Q	2

Reverse_YDL153C

610

70260

4.7

SAS10 SGDID:S000002312, Chr IV from 183019-181187, reverse complement, Verified ORF, "Component of the small (ribosomal) subunit (SSU) processosome required for pre-18S rRNa processing; essential nucleolar protein that, when overproduced, disrupts silencing"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04788.04788.2	1.8867	0.1134	97.4%	1278.8522	1280.201	53	3.245	55.0%	1	R.SVAEDES*GYDK.D	2

U	YDR261C-D	1	1	1.7%	1604	181660	7.5	YDR261C-D SGDID:S000007395, Chr IV from 992343-991039,991037-987528, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YPR158W-B	1	1	1.5%	1756	198637	8.3	YPR158W-B SGDID:S000007364, Chr XVI from 844705-846009,846011-849976, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YPR158C-D	1	1	1.5%	1755	198373	7.9	YPR158C-D SGDID:S000007362, Chr XVI from 856253-854949,854947-850985, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YPR137C-B	1	1	1.5%	1755	198567	8.2	YPR137C-B SGDID:S000007360, Chr XVI from 810265-808961,808959-804997, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YPL257W-B	1	1	1.5%	1755	198575	8.1	YPL257W-B SGDID:S000007358, Chr XVI from 56748-58052,58054-62016, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YOL103W-B	1	1	1.5%	1755	198613	8.1	YOL103W-B SGDID:S000007350, Chr XV from 117999-119303,119305-123267, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YML045W	1	1	1.5%	1755	198524	8.2	YML045W SGDID:S000004508, Chr XIII from 184461-185765,185767-189729, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YML039W	1	1	1.5%	1755	198571	8.1	YML039W SGDID:S000004503, Chr XIII from 196628-197932,197934-201896, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YLR227W-B	1	1	1.5%	1755	198404	7.9	YLR227W-B SGDID:S000007376, Chr XII from 593440-594744,594746-598708, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YLR157C-B	1	1	1.5%	1755	198544	8.1	YLR157C-B SGDID:S000007374, Chr XII from 481602-480298,480296-476334, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YJR027W	1	1	1.5%	1755	198651	8.0	YJR027W SGDID:S000003788, Chr X from 472674-473975,473977-477942, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YHR214C-B	1	1	1.5%	1793	202816	8.3	YHR214C-B SGDID:S000003534, Chr VIII from 549346-547931,547929-543964, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YGR038C-B	1	1	1.5%	1755	198520	8.2	YGR038C-B SGDID:S000007408, Chr VII from 567471-566167,566165-562203, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YER138C	1	1	1.5%	1755	198561	8.1	YER138C SGDID:S000000940, Chr V from 449020-447719,447717-443752, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR365W-B	1	1	1.5%	1755	198658	8.0	YDR365W-B SGDID:S000007401, Chr IV from 1206987-1208291,1208293-1212255, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR316W-B	1	1	1.5%	1755	198526	8.2	YDR316W-B SGDID:S000007399, Chr IV from 1096059-1097363,1097365-1101327, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	Jamie_01_itms_12.08260.08260.3	5.0504	0.3915	100.0%	3123.7444	3124.382	4	6.299	26.9%	1	R.KLSAPGQPGLYIDQDELEIDEDEYKEK.V	3

YDR135C

1515

171120

8.4

YCF1 SGDID:S000002542, Chr IV from 727546-722999, reverse complement, Verified ORF, "Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21755.21755.3	2.9107	0.094	93.6%	3064.8245	3062.2915	374	3.532	20.8%	1	K.NWENELKQKSNPSLSWAICRTFGS*K.M	3

YNL106C

1183

133331

8.6

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_14.09530.09530.3	2.8407	0.1324	97.2%	2407.7043	2407.7288	262	3.3	28.9%	1	R.IIPKIRNTILDAGYFS*YDVK.E	3

YAR019C

974

110285

8.0

CDC15 SGDID:S000000072, Chr I from 175133-172209, reverse complement, Verified ORF, "Protein kinase of the Mitotic Exit Network that is localized to the spindle pole bodies at late anaphase; promotes mitotic exit by directly switching on the kinase activity of Dbf2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_39.24670.24670.2	2.0884	0.2433	99.8%	1756.4722	1754.8485	399	4.858	37.5%	1	K.SAIPSSSSLPLSS*SPTR.N	2

YOR335C

958

107277

5.5

ALA1 SGDID:S000005862, Chr XV from 949104-946228, reverse complement, Verified ORF, "Cytoplasmic alanyl-tRNA synthetase, required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_59.36691.36691.3	2.3879	0.1305	93.1%	1763.4844	1766.0452	43	3.554	36.7%	1	K.ELGVKLGQLSIS*VITK.N	3

Reverse_YJL029C

822

95449

5.6

VPS53 SGDID:S000003566, Chr X from 390769-388301, reverse complement, Verified ORF, "Component of the GARP (Golgi-associated retrograde protein) complex, Vps51p-Vps52p-Vps53p-Vps54p, which is required for the recycling of proteins from endosomes to the late Golgi; required for vacuolar protein sorting"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_23.22133.22133.2	1.4512	0.1055	91.6%	1744.9722	1742.7911	130	3.918	38.5%	1	R.SISSLLYNIEDLSK.Y	2

Reverse_YMR165C

862

95031

5.0

SMP2 SGDID:S000004775, Chr XIII from 592627-590039, reverse complement, Verified ORF, "Protein of unknown function involved in respiration and plasmid maintenance; proposed to be involved in cell wall integrity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_41.25571.25571.2	1.7326	0.1408	97.2%	1670.1721	1669.6567	99	3.246	42.9%	1	R.KETEGSGATGKKSTK.E	2

YJL132W

750

84466

6.3

YJL132W SGDID:S000003668, Chr X from 161832-164084, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_13.15735.15735.2	1.7366	0.3117	100.0%	1582.6522	1579.6788	186	4.983	41.7%	1	P.ITAMYGSKVGTYK.A	2

YBR245C

1129

131102

6.6

ISW1 SGDID:S000000449, Chr II from 711534-708145, reverse complement, Verified ORF, "Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase that forms a complex with Ioc2p and Ioc4p to regulate transcription elongation, and a complex with Ioc3p to repress transcription initiation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_24.15269.15269.2	1.733	0.1597	98.1%	1685.2322	1687.628	89	3.443	38.2%	1	K.SGT*STGSAGTPEPGSGEK.G	2

YKL105C

1132

125593

5.8

YKL105C SGDID:S000001588, Chr XI from 242227-238829, reverse complement, Uncharacterized ORF, "Putative protein of unknown function"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_12.08285.08285.2	1.6822	0.0831	92.1%	1906.3522	1908.9768	8	2.876	35.3%	1	K.TASNTKTNSHGPPTSIS*K.Q	3 2

Reverse_YPL125W

1032

119623

5.3

KAP120 SGDID:S000006046, Chr XVI from 313387-316485, Verified ORF, "Karyopherin with a role in the assembly or export of 60S ribosomal subunits"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_31.19958.19958.2	1.9368	0.0439	90.5%	1946.9321	1948.9542	118	3.15	33.3%	1	R.IATQEWFDGT*VDSNER.Y	2

YPL195W

932

106924

5.1

APL5 SGDID:S000006116, Chr XVI from 176222-179020, Verified ORF, "Delta adaptin-like subunit of the clathrin associated protein complex (AP-3); functions in transport of alkaline phosphatase to the vacuole via the alternate pathway, suppressor of loss of casein kinase 1 function"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_20.13322.13322.2	1.7414	0.0691	91.2%	1676.9922	1675.8333	22	3.396	42.9%	1	R.VQVLS*DEPVIEAAPK.R	2

YPR135W

927

104425

5.2

CTF4 SGDID:S000006339, Chr XVI from 799230-802013, Verified ORF, "Chromatin-associated protein, required for sister chromatid cohesion; interacts with DNA polymerase alpha (Pol1p) and may link DNA synthesis to sister chromatid cohesion"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_15.17075.17075.2	1.5846	0.1049	92.9%	1771.3922	1770.7148	40	4.01	39.3%	1	K.TNNPEEEPETLDS*SK.L	2

Reverse_YGL049C

914

103899

7.6

TIF4632 SGDID:S000003017, Chr VII from 409607-406863, reverse complement, Verified ORF, "Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4631p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_27.17233.17233.2	1.6568	0.0824	91.7%	1693.2122	1691.8625	17	2.568	46.4%	1	R.RKSSVRSSSTHDMGR.M	2

YHR172W

823

96825

6.4

SPC97 SGDID:S000001215, Chr VIII from 448335-450806, Verified ORF, "Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04938.04938.2	3.8891	0.3209	100.0%	1612.8922	1613.6844	1	6.78	79.2%	1	R.DCDSEEDKNLLFK.M	2

YDR138W

752

87829

5.3

HPR1 SGDID:S000002545, Chr IV from 730573-732831, Verified ORF, "Subunit of THO/TREX, related complexes that couple transcription elongation with mitotic recombination and elongation with mRNA metabolism and export, subunit of an RNA Pol II complex; regulates lifespan; similar to Top1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_1.00371.00371.2	3.1765	0.0428	98.2%	1435.6721	1434.5486	20	3.72	68.2%	1	K.RALEEEASFPER.E	2

YER165W

577

64344

6.0

PAB1 SGDID:S000000967, Chr V from 510368-512101, Verified ORF, "Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail, involved in control of poly(A) tail length, interacts with translation factor eIF-4G"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_2.01180.01180.2	2.0376	0.0714	96.0%	1065.2922	1066.1588	27	4.367	62.5%	1	K.NLHPDIDNK.A	2

Reverse_YLR085C

438

50044

5.5

ARP6 SGDID:S000004075, Chr XII from 301990-300674, reverse complement, Verified ORF, "Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_4.03444.03444.1	2.1184	0.0201	91.3%	731.14	730.8827	1	2.264	75.0%	1	R.GGIDLKK.V	1

Reverse_YGR281W

1477

166727

7.7

YOR1 SGDID:S000003513, Chr VII from 1052830-1057263, Verified ORF, "Plasma membrane transporter of the ATP-binding cassette (ABC) family, mediates export of many different organic anions including oligomycin"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_39.24698.24698.2	1.8369	0.1004	95.2%	2327.0723	2329.4368	75	3.647	31.0%	1	K.DVDTSIDSSASAKPSLVVNQS*K.N	2

YPL217C

1183

135571

6.8

BMS1 SGDID:S000006138, Chr XVI from 143170-139619, reverse complement, Verified ORF, "Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits and for processing of the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, has similarity to Tsr1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_46.28940.28940.2	1.5413	0.0879	90.6%	2159.7922	2158.5063	76	2.737	32.4%	1	R.S*FIQKVLTISKAKDSKRK.E	2

YNL054W

1165

128140

6.0

VAC7 SGDID:S000004999, Chr XIV from 526087-529584, Verified ORF, "Integral vacuolar membrane protein involved in vacuole inheritance and morphology; may function to regulate Fab1p kinase activity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_18.11781.11781.2	1.6752	0.0755	91.2%	2015.3121	2017.0234	191	3.491	31.2%	1	K.PLISDYGEDEDVDDYDR.P	2

YMR317W

1140

113071

5.2

YMR317W SGDID:S000004936, Chr XIII from 907362-910784, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_14.09470.09470.2	1.7643	0.0753	92.2%	1808.4122	1805.81	51	3.858	34.4%	1	R.STTKPTAAIHGTSSSAK.Q	2

YAL056W

880

98612

7.4

GPB2 SGDID:S000000052, Chr I from 39260-41902, Verified ORF, "Proposed beta subunit of the heterotrimeric G protein that interacts with the receptor Grp1p, has signaling role in response to nutrients; involved in regulation of pseudohyphal growth through cAMP levels; homolog of Gpb1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04655.04655.2	1.9867	0.1444	98.2%	1507.0721	1507.575	35	4.447	45.8%	1	R.ASVHS*SSMNEIHK.M	2

YCR030C

870

96137

8.6

SYP1 SGDID:S000000626, Chr III from 176433-173821, reverse complement, Verified ORF, "Protein with a potential role in actin cytoskeletal organization; overexpression suppresses a pfy1 (profilin) null mutation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_5.03763.03763.2	2.5098	0.0090	92.7%	1530.6322	1529.6963	304	2.96	50.0%	1	K.VGSIFGRNKT*KNK.R	2

Reverse_YLR222C

817

91032

5.4

UTP13 SGDID:S000004212, Chr XII from 581773-579320, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04689.04689.2	2.0153	0.1084	97.8%	1301.0721	1300.4087	374	3.927	50.0%	1	K.VT*KDGSSTALLK.D	2

Reverse_YIL115C

1460

158907

4.8

NUP159 SGDID:S000001377, Chr IX from 148706-144324, reverse complement, Verified ORF, "Subunit of the nuclear pore complex that is found exclusively on the cytoplasmic side, forms a subcomplex with Nup82p and Nsp1p, required for mRNA export"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_47.29227.29227.2	1.5926	0.0771	90.1%	2016.0922	2018.4044	55	3.43	31.6%	1	R.LLQLEGVVAKSGSAAVFLSK.S	2

Reverse_YER176W

1121

126970

9.4

ECM32 SGDID:S000000978, Chr V from 541685-545050, Verified ORF, "DNA dependent ATPase/DNA helicase belonging to the Dna2p- and Nam7p-like family of helicases that is involved in modulating translation termination; interacts with the translation termination factors, localized to polysomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_22.14590.14590.2	1.8283	0.0626	91.2%	2133.5122	2134.2207	119	3.067	30.0%	1	K.FTNYRTLPEGEEYILK.G	2

YOR109W

1107

124577

7.2

INP53 SGDID:S000005635, Chr XV from 525278-528601, Verified ORF, "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in a TGN (trans Golgi network)-to-early endosome pathway; hyperosmotic stress causes translocation to actin patches"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_23.15186.15186.2	1.7417	0.0786	92.3%	1754.8922	1752.7435	244	3.255	36.7%	1	K.SPTPQTSTASLSSVTK.N	2

YDL223C

1046

113616

6.4

HBT1 SGDID:S000002382, Chr IV from 60406-57266, reverse complement, Verified ORF, "Substrate of the Hub1p ubiquitin-like protein that localizes to the shmoo tip (mating projection); mutants are defective for mating projection formation, thereby implicating Hbt1p in polarized cell morphogenesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_36.22874.22874.2	1.8376	0.1479	97.9%	1677.5922	1674.7239	4	4.097	39.3%	1	R.HEAEWSGLSNDATTR.N	2

YBR229C

954

110266

6.2

ROT2 SGDID:S000000433, Chr II from 679216-676352, reverse complement, Verified ORF, "Glucosidase II catalytic subunit required for normal cell wall synthesis; mutations in rot2 suppress tor2 mutations, and are synthetically lethal with rot1 mutations"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_24.15432.15432.2	1.6021	0.0975	92.9%	1445.0922	1445.6157	105	3.987	45.8%	1	K.VKKNGEESSLPTR.S	2

YNL126W

846

98227

7.5

SPC98 SGDID:S000005070, Chr XIV from 387229-389769, Verified ORF, "Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex; interacts with Spc110p at the spindle pole body (SPB) inner plaque and with Spc72p at the SPB outer plaque"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_13.08691.08691.2	2.8379	0.289	100.0%	1379.8121	1380.4943	10	5.73	63.6%	1	K.NDGDEELFLLSK.S	2

Reverse_YJL045W

634

69382

7.4

YJL045W SGDID:S000003581, Chr X from 355940-357844, Uncharacterized ORF, "Similar to SDH1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_3.02474.02474.2	1.3555	0.1039	90.9%	1218.6921	1218.2253	34	3.421	56.2%	1	R.QYIRGDET*R.S	2

Reverse_YBR208C

1835

201831

5.6

DUR1,2 SGDID:S000000412, Chr II from 642205-636698, reverse complement, Verified ORF, "Urea amidolyase, contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_10.13876.13876.3	2.5138	0.1622	95.9%	2674.7043	2670.729	111	3.701	25.0%	1	K.SPEYAFSPCAATTPLGRVDINDK.V	3

YBL034C

1513

174176

6.3

STU1 SGDID:S000000130, Chr II from 158392-153851, reverse complement, Verified ORF, "Component of the mitotic spindle that binds to interpolar microtubules via its association with beta-tubulin (Tub2p); required for interpolar microtubules to provide an outward force on the spindle poles"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_31.19828.19828.2	1.899	0.269	99.8%	2327.152	2324.5957	296	3.878	30.6%	1	K.FWLASIKAIEAIYLVNPSK.I	2

Reverse_YDR227W

1358

152061

9.0

SIR4 SGDID:S000002635, Chr IV from 917565-921641, Verified ORF, "Silent information regulator that, together with SIR2 and SIR3, is involved in assembly of silent chromatin domains at telomeres and the silent mating-type loci; potentially phosphorylated by Cdc28p; some alleles of SIR4 prolong lifespan"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_49.30695.30695.2	1.8055	0.1542	98.1%	1850.9722	1851.8412	158	3.981	34.4%	1	R.S*ADHSPNNSEIRGASTK.S	2

Reverse_YCR033W

1226

138397

9.1

SNT1 SGDID:S000000629, Chr III from 186484-190164, Verified ORF, "Subunit of the Set3C deacetylase complex; putative DNA-binding protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_37.23535.23535.2	2.1837	0.1929	99.0%	1823.6522	1825.9243	356	4.173	33.3%	1	K.T*EDKSPTEVKVSAEPK.D	2

YCR067C

1065

114079

4.7

SED4 SGDID:S000000663, Chr III from 236317-233120, reverse complement, Verified ORF, "Integral endoplasmic reticulum membrane protein, functions as a positive regulator of Sar1p probably through inhibition of GTPase activation by Sec23p; binds Sec16p, participates in vesicle formation, similar to Sec12p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_36.23016.23016.2	1.7539	0.0885	93.4%	1682.6721	1680.038	5	3.766	46.2%	1	R.EIYKTKIITEVITK.I	2

YPR031W

748

86029

7.6

YPR031W SGDID:S000006235, Chr XVI from 631512-633758, Uncharacterized ORF, "Component of the histone acetyltransferase complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_57.35629.35629.2	1.4487	0.1236	93.8%	1279.8522	1280.2107	13	3.528	61.1%	1	K.RTQASNSLSR.S	2

Reverse_YPL260W

551

62780

5.1

YPL260W SGDID:S000006181, Chr XVI from 49303-50958, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_2.00973.00973.2	2.4887	0.0807	98.4%	917.1722	917.00977	1	3.767	100.0%	2	K.RIDDLER.V	2

YLR342W

1876

214849

7.2

FKS1 SGDID:S000004334, Chr XII from 809997-815627, Verified ORF, "Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_7.04972.04972.2	2.5474	0.2077	99.8%	2536.7722	2538.6814	1	4.364	40.9%	1	K.ILAEETAAYEGNENEAEKEDALK.S	2

YER166W

1571

177797

6.0

DNF1 SGDID:S000000968, Chr V from 512739-517454, Verified ORF, "Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the plasma membrane and late exocytic or early endocytic membranes, likely involved in protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_25.16393.16393.2	2.4307	0.2373	100.0%	2089.2522	2087.2131	180	4.893	30.6%	1	K.KGRS*RFSYEFGTIAGSAAT.N	2

Reverse_YGL197W

1487

167074

7.7

MDS3 SGDID:S000003165, Chr VII from 124703-129166, Verified ORF, "Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Pmd1p, for growth under alkaline conditions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_35.31615.31615.2	1.8765	0.2355	99.4%	2005.9722	2007.2665	85	3.967	35.3%	1	K.SLALPIGNVNT*TIEMPQK.P	2

Reverse_YMR190C

1447

163837

6.3

SGS1 SGDID:S000004802, Chr XIII from 645257-640914, reverse complement, Verified ORF, "Nucleolar DNA helicase of the RecQ family involved in maintenance of genome integrity, regulates chromosome synapsis and meiotic crossing over; has similarity to human BLM and WRN helicases implicated in Bloom and Werner syndromes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_35.21974.21974.2	1.6405	0.0765	90.6%	1912.9521	1912.1742	43	2.983	34.4%	1	R.RQEATGRSSFMSAKINK.N	2

Reverse_YBR081C

1332

152617

4.9

SPT7 SGDID:S000000285, Chr II from 405245-401247, reverse complement, Verified ORF, "Subunit of the SAGA transcriptional regulatory complex, involved in proper assembly of the complex; also present as a C-terminally truncated form in the SLIK/SALSA transcriptional regulatory complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_7.05011.05011.4	2.4479	0.1343	94.9%	1901.6166	1906.8682	18	3.592	32.2%	1	K.RGSGAVEEEEDLEY*DK.D	4

YMR189W

1034

114451

7.3

GCV2 SGDID:S000004801, Chr XIII from 637499-640603, Verified ORF, "P subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_29.18651.18651.2	1.3892	0.0979	90.1%	1434.7722	1435.4935	128	3.263	45.5%	1	R.SST*NYVSLARTR.S	2

Reverse_YMR232W

677

79037

8.9

FUS2 SGDID:S000004845, Chr XIII from 736925-738958, Verified ORF, "Cytoplasmic protein localized to the shmoo tip; required for the alignment of parental nuclei before nuclear fusion during mating"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_2.01519.01519.2	1.4306	0.0974	91.9%	1148.1122	1146.2057	147	3.727	57.1%	1	K.SLKRTPKR.V	2

YIL082W-A

1.1%

1498

172454

9.2

YIL082W-A SGDID:S000003537, Chr IX from 205632-206482,206484-210129, transposable_element_gene, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_12.15594.15594.2	2.0188	0.1953	99.0%	1892.4722	1893.1014	5	4.316	40.6%	1	R.NTKLS*LAPTILEATDPK.S	2

Reverse_YHR164C

1.1%

1522

171694

6.5

DNA2 SGDID:S000001207, Chr VIII from 429180-424612, reverse complement, Verified ORF, "Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, and helicase activities; required for Okazaki fragment processing; involved in DNA repair pathways; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_29.18438.18438.2	1.6939	0.1036	93.6%	1881.7922	1878.9481	20	3.369	40.0%	1	K.EETKKAPSVSISASRK.N	2

YEL022W

1.1%

1459

165667

5.1

GEA2 SGDID:S000000748, Chr V from 111421-115800, Verified ORF, "Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs), involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; similar to but not functionally redundant with Gea1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_47.29304.29304.2	2.0098	0.2752	100.0%	1747.5322	1744.5992	1	4.906	46.7%	1	K.SIEKGNGSSSHGSAHE.Q	2

Reverse_YJL109C

1769

200080

6.5

UTP10 SGDID:S000003645, Chr X from 217226-211917, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_54.33362.33362.2	2.0446	0.2556	94.1%	1867.7122	1866.2548	1	4.689	41.2%	1	N.NLSILKLATPAAPSITVR.L	2

Reverse_YFL033C

1770

196530

6.5

RIM15 SGDID:S000001861, Chr VI from 74425-69113, reverse complement, Verified ORF, "Glucose-repressible protein kinase involved in signal transduction during cell proliferation in response to nutrients, specifically the establishment of stationary phase; originally identified as a regulator of IME2"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26487.26487.2	1.888	0.1841	98.6%	1784.9722	1787.9641	4	3.658	43.8%	1	R.SFYSSVTTTNAPSLPSK.F	2

YER105C

1391

156649

6.4

NUP157 SGDID:S000000907, Chr V from 372009-367834, reverse complement, Verified ORF, "Abundant subunit of the nuclear pore complex (NPC), present on both sides of the NPC, has similarity to Nup170p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_35.22079.22079.2	2.0919	0.185	99.0%	1692.8722	1690.5542	368	4.226	38.5%	1	R.ANGLCDSSTSFDQK.P	2

YOL138C

1341

149269

7.0

YOL138C SGDID:S000005498, Chr XV from 65349-61324, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_8.05865.05865.2	1.7299	0.1021	94.8%	1587.8722	1588.7178	166	3.505	41.7%	1	R.TRQNKFST*IADVK.T	2

Reverse_YDR293C

1250

139954

7.6

SSD1 SGDID:S000002701, Chr IV from 1049386-1045634, reverse complement, Verified ORF, "Protein with a role in maintenance of cellular integrity, interacts with components of the TOR pathway; ssd1 mutant of a clinical S. cerevisiae strain displays elevated virulence"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_14.09567.09567.2	1.4442	0.1738	97.7%	1255.8522	1254.3427	82	3.687	45.5%	1	K.VT*VGAEGGSIRK.A	2

Reverse_YOR207C

1149

129456

8.2

RET1 SGDID:S000005733, Chr XV from 733457-730008, reverse complement, Verified ORF, "Second-largest subunit of RNA polymerase III, which is responsible for the transcription of tRNA and 5S RNA genes, and other low molecular weight RNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_6.04437.04437.2	1.4064	0.1344	94.0%	1266.8322	1265.3658	1	3.631	65.0%	1	R.SQGDS*VIILPR.C	2

YHR099W

0.9%

3744

433182

6.5

TRA1 SGDID:S000001141, Chr VIII from 302764-313998, Verified ORF, "Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with acidic activators (e.g., Gal4p) which leads to transcription activation; similar to human TRRAP, which is a cofactor for c-Myc mediated oncogenic transformation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_15.10241.10241.4	3.1997	0.2063	99.2%	3833.8564	3832.9348	117	3.438	19.3%	1	K.AEQGDLDS*PKEPQADELLDEFSKNDEEKDFPSK.Q	4

Reverse_YDR420W

0.9%

1802

188947

4.8

HKR1 SGDID:S000002828, Chr IV from 1306257-1311665, Verified ORF, "Serine/threonine rich cell surface protein that contains an EF hand motif; involved in the regulation of cell wall beta-1,3 glucan synthesis and bud site selection; overexpression confers resistance to Hansenula mrakii killer toxin, HM-1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_58.36051.36051.2	1.558	0.1334	95.3%	1692.4922	1689.7301	3	3.769	40.0%	1	K.ISSISSSS*YGFSTASK.S	2

Reverse_YPL158C

0.9%

758

84846

6.7

YPL158C SGDID:S000006079, Chr XVI from 254309-252033, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_1.00799.00799.2	1.7843	0.1652	98.7%	947.47217	948.0238	119	3.551	66.7%	1	R.FSKTKT*R.I	2

YMR229C

1729

193133

6.2

RRP5 SGDID:S000004842, Chr XIII from 731122-725933, reverse complement, Verified ORF, "Protein required for the synthesis of both 18S and 5.8S rRNA; C-terminal region is crucial for the formation of 18S rRNA and N-terminal region is required for the 5.8S rRNA; component of small ribosomal subunit (SSU) processosome"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_9.06157.06157.2	1.8674	0.1345	98.0%	1602.4321	1599.738	40	3.475	46.2%	1	K.S*WDDLSIGSIVKAK.I	2

Reverse_YFL036W

1351

153047

8.9

RPO41 SGDID:S000001858, Chr VI from 58781-62836, Verified ORF, "Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_27.17038.17038.2	1.5983	0.1207	95.6%	1436.3722	1436.4758	96	3.542	55.0%	1	K.KDSLKESLLSR.C	2

Reverse_YPL217C

1183

135571

6.8

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_3.01719.01719.2	2.1701	0.1598	98.9%	1043.6921	1044.196	4	3.908	72.2%	1	K.EDGGLVVARK.A	2

YGL156W

1083

124499

7.3

AMS1 SGDID:S000003124, Chr VII from 210421-213672, Verified ORF, "Vacuolar alpha mannosidase, involved in free oligosaccharide (fOS) degradation; delivered to the vacuole in a novel pathway separate from the secretory pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_1.00379.00379.2	1.7974	0.0536	92.3%	877.3522	877.9701	323	3.603	68.8%	1	R.GALSSDTVK.L	2

YKL073W

881

99572

5.3

LHS1 SGDID:S000001556, Chr XI from 296074-298719, Verified ORF, "Molecular chaperone of the endoplasmic reticulum lumen, involved in polypeptide translocation and folding; member of the Hsp70 family; localizes to the lumen of the ER; regulated by the unfolded protein response pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_3.01902.01902.2	1.6929	0.0369	90.1%	926.4122	924.94617	98	3.385	66.7%	1	K.RLSPS*ER.S	2

YJL130C

2214

245123

5.9

URA2 SGDID:S000003666, Chr X from 172285-165641, reverse complement, Verified ORF, "Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_34.21797.21797.2	1.7806	0.0684	91.5%	2097.4722	2097.0518	297	3.311	30.0%	1	K.STCACFEPSLDYCVVK.M	2

YGR271W

1967

224828

6.5

SLH1 SGDID:S000003503, Chr VII from 1031797-1037700, Verified ORF, "Putative RNA helicase related to Ski2p, involved in translation inhibition of non-poly(A) mRNAs; required for repressing propagation of dsRNA viruses"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_02_itms_16.17636.17636.2	1.612	0.1421	96.2%	1746.7522	1747.989	3	3.98	38.5%	1	K.KLLTLEEIGRFGY*K.K	2

YLR422W

1932

221562

7.8

YLR422W SGDID:S000004414, Chr XII from 965893-971691, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_42.26618.26618.2	2.0602	0.0372	92.0%	1771.1122	1773.8137	80	3.255	45.8%	1	K.EYLLKESARNFSR.G	2

Reverse_YIL149C

1679

195140

6.0

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_11.07681.07681.1	2.7481	0.0531	92.9%	1343.13	1343.5199	1	4.65	63.6%	1	K.ANINELEIIADK.A	1
*	Jamie_01_itms_11.07894.07894.2	2.7674	0.1393	99.2%	1343.9922	1343.5199	1	4.892	86.4%	1	K.ANINELEIIADK.A	2

Reverse_YOL004W

1536

174838

5.6

SIN3 SGDID:S000005364, Chr XV from 316938-321548, Verified ORF, "DNA binding subunit of Sin3p-Rpd3p histone deacetylase complex, involved in transcriptional repression of meiosis-specific genes during vegetative growth and silencing"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_5.04271.04271.2	2.8285	0.1379	99.6%	1487.1721	1488.4673	1	3.645	77.8%	1	K.FLTEEYQNKR.H	2

YBR081C

1332

152617

4.9

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_5.04195.04195.2	1.4694	0.0783	90.0%	1152.3722	1153.1912	264	3.136	50.0%	1	R.PTLQELS*ER.N	2

YKR054C

4092

471351

6.3

DYN1 SGDID:S000001762, Chr XI from 547567-535289, reverse complement, Verified ORF, "Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_8.05605.05605.3	3.089	0.0263	91.0%	2405.8442	2404.583	126	2.629	36.1%	1	K.MLMEQNESERKQEAT*EEIK.K	3

YOL081W

3079

351669

7.1

IRA2 SGDID:S000005441, Chr XV from 171069-180308, Verified ORF, "GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions, has similarity to Ira1p and human neurofibromin"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_28.18064.18064.2	1.8171	0.0935	94.3%	1577.0922	1577.821	12	3.561	42.3%	1	K.TDLGKLEAADKFLR.Y	2

Reverse_YNL262W

2222

255669

7.0

POL2 SGDID:S000005206, Chr XIV from 148213-154881, Verified ORF, "Catalytic subunit of DNA polymerase epsilon, one of the major chromosomal DNA replication polymerases characterized by processivity and proofreading exonuclease activity; also involved in DNA synthesis during DNA repair"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_19.12810.12810.2	1.7273	0.1294	96.6%	1318.2922	1319.2871	6	3.653	55.0%	1	R.SS*NTNGFLQDR.R	2

YLL048C

1661

189161

8.1

YBT1 SGDID:S000003971, Chr XII from 46264-41279, reverse complement, Verified ORF, "Transporter of the ATP-binding cassette (ABC) family involved in bile acid transport; similar to mammalian bile transporters"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	Jamie_01_itms_2.01097.01097.2	2.1585	0.018	92.6%	1119.8322	1121.4265	396	3.029	68.8%	1	R.KIFNMILNK.V	2

Reverse_YML103C