D parc

DTASelect v2.0.21
/data/6/jamest/xu/jan08/hx22/parc
/scratch/yates/SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta
SEQUEST 3.0 in SQT format.
--trypstat
Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
0.0	Minimum peptide confidence
0.05	Peptide false positive rate
0.0	Minimum protein confidence
1.0	Protein false positive rate
1	Minimum charge state
16	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
false	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
true	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
1000	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

contaminant_KERATIN03

18.7%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx22_01a_itms.07564.07564.1	2.184	0.2757	100.0%	1029.57	1030.0819	1	5.196	59.1%	1	K.GSLGGGFSSGGF.S	1
*	PARC_hx22_01a_itms.07132.07132.1	2.7587	0.303	100.0%	1330.46	1331.4252	1	5.733	59.1%	1	K.NQILNLTTDNAN.I	1
*	PARC_hx22_01a_itms.07124.07124.2	4.1817	0.3291	100.0%	1330.9321	1331.4252	1	6.557	86.4%	1	K.NQILNLTTDNAN.I	2
	PARC_hx22_01b_itms.05736.05736.2	3.0943	0.2953	100.0%	1202.2522	1202.3097	1	5.165	95.0%	8	R.QSVEADINGLR.R	2
*	PARC_hx22_01b_itms.00440.00440.2	5.803	0.4226	100.0%	2873.872	2874.2134	1	8.842	48.1%	1	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	2
*	PARC_hx22_01b_itms.00155.00155.2	5.1163	0.3014	100.0%	1798.8722	1798.0898	1	6.948	70.0%	8	R.NVQALEIELQSQLALK.Q	2
*	PARC_hx22_01b_itms.05826.05826.2	3.9274	0.4831	100.0%	1390.9922	1391.4778	1	7.567	87.5%	5	K.QSLEASLAETEGR.Y	2
*	PARC_hx22_01a_itms.07058.07058.2	3.4124	0.3039	100.0%	1338.1322	1338.4694	2	5.791	80.0%	1	R.YCVQLSQIQAQ.I	2
*	PARC_hx22_01b_itms.00869.00869.2	2.3346	0.1828	100.0%	1166.4922	1166.2761	1	4.585	87.5%	2	R.LENEIQTYR.S	2

contaminant_KERATIN13

15.2%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx22_01b_itms.00443.00443.2	3.8992	0.3463	100.0%	1385.4122	1384.5315	1	6.907	72.7%	13	K.SLNNQFASFIDK.V	2
	PARC_hx22_02b_itms.00288.00288.2	3.8238	0.044	100.0%	1476.9521	1476.6726	1	5.966	77.3%	1	R.FLEQQNQVLQTK.W	2 2
*	PARC_hx22_01b_itms.00557.00557.2	2.2169	0.0355	96.6%	1477.0922	1476.6293	34	3.099	54.5%	1	K.WELLQQVDTSTR.T	2
*	PARC_hx22_02b_itms.18734.18734.2	4.6761	0.5135	100.0%	1994.3121	1995.2017	1	8.466	70.0%	13	R.THNLEPYFESFINNLR.R	2
*	PARC_hx22_01b_itms.05791.05791.2	3.9127	0.3923	100.0%	1265.3922	1266.3934	1	6.955	90.0%	9	R.TNAENEFVTIK.K	2
*	PARC_hx22_01b_itms.04596.04596.2	3.9599	0.2923	100.0%	1128.9122	1126.2084	1	6.522	88.9%	19	K.AEAESLYQSK.Y	2
*	PARC_hx22_01b_itms.05542.05542.2	3.8612	0.227	100.0%	1181.3722	1180.303	1	6.53	94.4%	1	K.YEELQITAGR.H	2
*	PARC_hx22_01b_itms.05842.05842.2	3.5665	0.4148	100.0%	1717.2922	1717.8333	1	8.424	60.7%	1	K.QISNLQQSISDAEQR.G	2

Similarities: contaminant_KERATIN22(1:7)

contaminant_KERATIN21

14.8%

357

39219

5.2

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx22_01b_itms.00465.00465.2	3.9044	0.3866	100.0%	1891.4321	1892.1216	1	6.968	71.4%	1	-.QNLEPLFEQYINNLR.R	2 2
PARC_hx22_01b_itms.05899.05899.2	3.2193	0.2575	100.0%	1225.3522	1223.3684	4	5.586	70.0%	2	R.TAAENEFVTLK.K	2
PARC_hx22_01b_itms.00747.00747.2	1.8216	0.083	96.2%	1109.5521	1108.196	2	4.365	75.0%	1	K.AQYEEIAQR.S	2 2 2
PARC_hx22_01b_itms.05191.05191.2	3.7081	0.3793	100.0%	1213.3121	1213.2891	1	6.549	83.3%	2	R.AEAESWYQTK.Y	2
PARC_hx22_01b_itms.04638.04638.2	1.9743	0.0581	97.1%	973.27216	973.0739	1	3.259	78.6%	1	K.QEIAEINR.M	2

Similarities: contaminant_KERATIN17(1:4)
contaminant_KERATIN22(1:4)
contaminant_KERATIN16(1:4)

contaminant_KERATIN02

13.7%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx22_01b_itms.05340.05340.2	5.9549	0.4168	100.0%	1588.6921	1587.6836	1	7.739	88.5%	23	K.VQALEEANNDLENK.I	2
*	PARC_hx22_01b_itms.05484.05484.2	2.06	0.0010	96.3%	1122.3922	1122.2633	1	4.323	81.2%	3	R.QEYEQLIAK.N	2
*	PARC_hx22_02b_itms.10736.10736.3	6.1336	0.4306	100.0%	3266.5745	3266.413	1	7.356	33.0%	8	K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E	3
*	PARC_hx22_02b_itms.18204.18204.2	5.8168	0.4569	100.0%	1838.2922	1839.0557	1	8.196	83.3%	5	R.HGVQELEIELQSQLSK.K	2
*	PARC_hx22_01a_itms.05920.05920.2	3.0513	0.2732	100.0%	1341.1522	1341.3398	1	6.275	77.8%	1	R.QEIECQNQEY.S	2
*	PARC_hx22_01b_itms.00442.00442.2	5.4967	0.505	100.0%	2095.392	2096.308	1	9.131	71.9%	10	R.QEIECQNQEYSLLLSIK.M	2

contaminant_TRYPSIN

12.7%

229

23993

7.9

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx22_01a_itms.08975.08975.2	3.4384	0.3209	100.0%	2157.7922	2158.3386	7	6.21	35.0%	1	K.IVGGYTCGANTVPYQVSLNSG.Y	2
*	PARC_hx22_01a_itms.09329.09329.1	2.1713	0.2555	100.0%	905.58	904.99817	19	5.139	64.3%	1	G.GSLINSQW.V	1

contaminant_KERATIN17

10.2%

590

62461

8.1

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx22_01b_itms.00465.00465.2	3.9044	0.3866	100.0%	1891.4321	1892.1216	1	6.968	71.4%	1	R.QNLEPLFEQYINNLR.R	2 2
*	PARC_hx22_01b_itms.05227.05227.2	3.6949	0.4176	100.0%	1242.8322	1243.3153	1	6.856	83.3%	6	R.TEAESWYQTK.Y	2
*	PARC_hx22_01b_itms.04464.04464.2	3.7846	0.3231	100.0%	1194.9922	1195.2743	1	6.426	94.4%	7	K.YEELQQTAGR.H	2
*	PARC_hx22_01a_itms.06946.06946.2	2.4894	0.2814	100.0%	1128.9922	1129.2554	2	5.321	68.2%	1	R.LSGEGVGPVNIS.V	2
*	PARC_hx22_01a_itms.06844.06844.1	2.1203	0.3622	100.0%	1038.42	1039.0898	1	6.294	45.8%	1	R.GLGVGFGSGGGSS.S	1

Similarities: contaminant_KERATIN21(1:4)

contaminant_KERATIN05

9.6%

471

51531

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx22_01b_itms.00539.00539.2	4.4338	0.0816	100.0%	2088.612	2087.269	1	7.305	52.5%	3	R.GQVGGDVNVEMDAAPGVDLSR.I	2
	PARC_hx22_01b_itms.04562.04562.2	4.0379	0.4108	100.0%	1361.8522	1362.4796	1	8.278	83.3%	10	R.EVATNSELVQSGK.S	2
	PARC_hx22_01b_itms.05275.05275.2	3.2629	0.2979	100.0%	1221.3322	1221.3068	1	6.142	80.0%	10	K.ASLENSLEETK.G	2 2 2

Similarities: contaminant_KERATIN08(1:2)
contaminant_KERATIN07(1:2)

contaminant_KERATIN08

9.6%

469

50499

5.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx22_01b_itms.00713.00713.2	3.7281	0.1771	100.0%	2087.5723	2089.2415	1	6.471	45.0%	4	R.GQTGGDVNVEMDAAPGVDLSR.I	2
*	PARC_hx22_01b_itms.04538.04538.2	3.9255	0.3926	100.0%	1406.1921	1406.4924	1	7.687	70.8%	6	K.EVASNSELVQSSR.S	2
	PARC_hx22_01b_itms.05275.05275.2	3.2629	0.2979	100.0%	1221.3322	1221.3068	1	6.142	80.0%	10	K.ASLENSLEETK.G	2 2 2

Similarities: contaminant_KERATIN05(1:2)
contaminant_KERATIN07(1:2)

contaminant_KERATIN07

6.3%

473

50915

5.5

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx22_01b_itms.00501.00501.2	5.6705	0.4426	100.0%	2065.392	2065.3774	1	8.45	63.9%	5	K.IIAATIENAQPILQIDNAR.L	2
	PARC_hx22_01b_itms.05275.05275.2	3.2629	0.2979	100.0%	1221.3322	1221.3068	1	6.142	80.0%	10	K.ASLENSLEETK.G	2 2 2

Similarities: contaminant_KERATIN05(1:1)
contaminant_KERATIN08(1:1)

contaminant_KERATIN22

5.1%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx22_02b_itms.00288.00288.2	3.8238	0.044	100.0%	1476.9521	1476.6726	1	5.966	77.3%	1	R.FLEQQNQVLQTK.W	2 2
	PARC_hx22_01b_itms.00747.00747.2	1.8216	0.083	96.2%	1109.5521	1108.196	2	4.365	75.0%	1	K.AQYEEIAQR.S	2 2 2
*	PARC_hx22_01b_itms.05562.05562.2	4.747	0.2605	100.0%	1329.9722	1330.3971	1	7.081	86.4%	15	K.NVQDAIADAEQR.G	2

Similarities: contaminant_KERATIN13(1:2)
contaminant_KERATIN21(1:2)
contaminant_KERATIN16(1:2)

contaminant_KERATIN16

3.9%

534

57265

6.6

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx22_01b_itms.05580.05580.2	4.0593	0.2268	100.0%	1477.4321	1477.7007	1	4.945	90.9%	3	Q.FLEQQNKVLETK.W	2
	PARC_hx22_01b_itms.00747.00747.2	1.8216	0.083	96.2%	1109.5521	1108.196	2	4.365	75.0%	1	R.AQYEEIAQR.S	2 2 2

Similarities: contaminant_KERATIN21(1:1)
contaminant_KERATIN22(1:1)

	Proteins	Peptide IDs	Spectra
Unfiltered	3862	5671	6058
Filtered	11	42	216
Forward matches	11	42	216
Decoy matches	0	0	0
Forward FP rate	0.0%	0.0%	0.0%

/data/6/jamest/xu/jan08/hx22/parc