D parc

DTASelect v2.0.16
/data/6/jamest/xu/aug07/hx4/parc
/scratch/yates/SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta
SEQUEST 3.0 in SQT format.
--trypstat
Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
0.0	Minimum peptide confidence
0.05	Peptide false positive rate
0.0	Minimum protein confidence
1.0	Protein false positive rate
1	Minimum charge state
16	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
false	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
true	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
1000	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

contaminant_KERATIN03

100

51.4%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.11648.11648.2	1.8483	0.205	97.0%	2269.2122	2268.2903	3	4.363	32.0%	1	K.HYSSSRSGGGGGGGGCGGGGGVSSLR.I	2
*	PARC_hx4_04_itms.11710.11710.3	3.2874	0.2808	100.0%	2269.5544	2268.2903	1	4.839	30.0%	1	K.HYSSSRSGGGGGGGGCGGGGGVSSLR.I	3
*	PARC_hx4_02_itms.13702.13702.1	1.847	0.2329	95.7%	1029.35	1030.0819	11	4.342	50.0%	1	K.GSLGGGFSSGGF.S	1
*	PARC_hx4_03_itms.11319.11319.2	3.2851	0.3056	100.0%	1132.8121	1133.1625	4	5.082	81.8%	1	F.SSGGFSGGSFSR.G	2
*	PARC_hx4_03_itms.11028.11028.3	2.8187	0.2824	100.0%	1721.7843	1719.9103	14	4.802	35.7%	1	L.LSGNEKVTMQNLNDR.L	3
	PARC_hx4_02_itms.10503.10503.2	2.9143	0.2184	100.0%	1092.3322	1091.2273	5	4.791	87.5%	3	K.VTMQNLNDR.L	2 2 2
	PARC_hx4_02_itms.10712.10712.1	2.3162	0.1218	100.0%	809.56	809.93774	31	4.467	75.0%	1	R.LASYLDK.V	1 1 1 1 1 1 1
*	PARC_hx4_02_itms.11006.11006.2	4.61	0.3788	100.0%	1383.0721	1382.4668	1	7.607	81.8%	1	R.ALEESNYELEGK.I	2
*	PARC_hx4_02_itms.11010.11010.1	3.3256	0.2915	100.0%	1383.85	1382.4668	1	5.288	63.6%	2	R.ALEESNYELEGK.I	1
*	PARC_hx4_04_itms.20837.20837.2	4.8198	0.3572	100.0%	2368.892	2368.6523	1	6.977	50.0%	4	K.NQILNLTTDNANILLQIDNAR.L	2
*	PARC_hx4_04_itms.16842.16842.2	4.3683	0.2575	100.0%	1571.4321	1571.7306	1	6.518	76.9%	1	T.TDNANILLQIDNAR.L	2
	PARC_hx4_02_itms.10832.10832.1	1.7519	0.1657	100.0%	807.44	807.8815	11	3.857	58.3%	1	R.LAADDFR.L	1 1 1 1 1 1
	PARC_hx4_02_itms.10857.10857.2	2.5052	0.1433	99.8%	808.1122	807.8815	2	4.677	83.3%	2	R.LAADDFR.L	2 2 2 2 2 2
*	PARC_hx4_04_itms.12874.12874.2	3.2903	0.2549	100.0%	1235.3722	1235.4258	1	5.044	94.4%	1	R.LKYENEVALR.Q	2
*	PARC_hx4_02_itms.10358.10358.2	2.9251	0.2766	100.0%	994.0522	994.0923	1	6.253	92.9%	2	K.YENEVALR.Q	2
*	PARC_hx4_02_itms.10352.10352.1	2.2361	0.0882	100.0%	994.58	994.0923	1	4.106	78.6%	3	K.YENEVALR.Q	1
	PARC_hx4_04_itms.12885.12885.2	2.9352	0.3256	100.0%	1357.8922	1358.4972	1	6.098	77.3%	2	L.RQSVEADINGLR.R	2 2
	PARC_hx4_02_itms.12008.12008.2	3.1018	0.241	100.0%	1201.7722	1202.3097	1	5.725	95.0%	2	R.QSVEADINGLR.R	2 2
*	PARC_hx4_04_itms.14997.14997.1	1.9782	0.0902	98.8%	1031.56	1032.2224	36	3.797	68.8%	1	R.VLDELTLTK.A	1
*	PARC_hx4_03_itms.13352.13352.2	3.2309	0.2887	100.0%	1032.2322	1032.2224	2	5.438	87.5%	3	R.VLDELTLTK.A	2
*	PARC_hx4_04_itms.26358.26358.2	5.996	0.4228	100.0%	2098.652	2097.3853	1	9.048	73.5%	1	K.ADLEMQIESLTEELAYLK.K	2
	PARC_hx4_02_itms.11622.11622.1	2.3223	0.143	95.0%	865.51	866.0019	1	3.711	83.3%	1	T.EELAYLK.K	1 1 1 1
*	PARC_hx4_04_itms.22196.22196.2	5.847	0.4745	100.0%	2874.9521	2874.2134	1	8.152	46.2%	1	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	2
*	PARC_hx4_02_itms.10292.10292.2	4.4111	0.3756	100.0%	1366.1721	1366.43	1	6.875	85.0%	5	R.SQYEQLAEQNR.K	2
*	PARC_hx4_02_itms.10272.10272.1	2.4106	0.183	100.0%	1367.43	1366.43	1	4.885	60.0%	1	R.SQYEQLAEQNR.K	1
*	PARC_hx4_03_itms.09696.09696.2	3.4579	0.2394	100.0%	1494.6522	1494.6041	1	5.916	59.1%	3	R.SQYEQLAEQNRK.D	2
*	PARC_hx4_03_itms.13254.13254.1	2.8229	0.3085	100.0%	1109.48	1110.1681	1	6.443	75.0%	3	K.DAEAWFNEK.S	1
*	PARC_hx4_03_itms.13260.13260.2	3.2103	0.225	100.0%	1110.1322	1110.1681	1	5.669	81.2%	2	K.DAEAWFNEK.S	2
*	PARC_hx4_04_itms.17942.17942.2	5.6846	0.3547	100.0%	1997.6322	1998.151	1	9.064	78.1%	17	K.ELTTEIDNNIEQISSYK.S	2
*	PARC_hx4_02_itms.10394.10394.2	1.8017	0.1187	95.9%	847.83215	847.94385	40	3.43	83.3%	1	K.SEITELR.R	2
*	PARC_hx4_02_itms.12159.12159.1	2.0623	0.207	100.0%	1390.79	1391.4778	6	5.497	41.7%	1	K.QSLEASLAETEGR.Y	1
*	PARC_hx4_04_itms.13066.13066.2	4.0915	0.4422	100.0%	1390.8722	1391.4778	1	7.76	70.8%	5	K.QSLEASLAETEGR.Y	2
*	PARC_hx4_02_itms.12574.12574.2	3.3369	0.2123	98.4%	1339.4722	1338.4694	1	5.456	70.0%	1	R.YCVQLSQIQAQ.I	2
*	PARC_hx4_04_itms.16458.16458.2	4.1409	0.2597	100.0%	1428.4722	1428.6285	1	5.332	81.8%	3	Q.ISALEEQLQQIR.A	2
*	PARC_hx4_04_itms.16676.16676.2	5.879	0.3443	100.0%	2086.2922	2084.2104	1	7.339	71.9%	9	R.AETECQNTEYQQLLDIK.I	2
*	PARC_hx4_04_itms.14922.14922.2	2.8559	0.1398	99.6%	1435.0322	1435.623	1	5.002	75.0%	1	K.IRLENEIQTYR.S	2
*	PARC_hx4_02_itms.10702.10702.1	3.2255	0.2469	100.0%	1165.65	1166.2761	2	4.839	81.2%	3	R.LENEIQTYR.S	1
*	PARC_hx4_02_itms.10694.10694.2	3.5082	0.2564	100.0%	1165.7322	1166.2761	1	4.593	93.8%	4	R.LENEIQTYR.S	2
*	PARC_hx4_02_itms.10454.10454.1	2.452	0.3325	100.0%	1262.65	1263.3066	3	5.365	53.8%	2	R.SLLEGEGSSGGGGR.G	1
*	PARC_hx4_02_itms.10443.10443.2	3.6912	0.4793	100.0%	1263.1122	1263.3066	1	7.493	80.8%	2	R.SLLEGEGSSGGGGR.G	2

Similarities: contaminant_KERATIN02(1:39)
contaminant_KERATIN05(5:35)
contaminant_KERATIN08(4:36)
contaminant_KERATIN12(4:36)
contaminant_KERATIN07(3:37)
contaminant_KERATIN10(4:36)
contaminant_KERATIN04(2:38)

YOL039W

48.1%

106

10746

4.0

RPP2A SGDID:S000005399, Chr XV from 254295-254615, Verified ORF, "Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.12175.12175.2	4.0911	0.3906	100.0%	1399.3922	1399.587	1	6.525	76.9%	1	Y.LLLNAAGNTPDATK.I	2
*	PARC_hx4_04_itms.17632.17632.2	4.81	0.2932	100.0%	1545.2922	1545.727	1	7.957	73.1%	2	K.AILESVGIEIEDEK.V	2
*	PARC_hx4_04_itms.16704.16704.2	3.6746	0.3831	100.0%	1090.2322	1090.2621	1	6.911	85.0%	1	K.VSSVLSALEGK.S	2
*	PARC_hx4_02_itms.11764.11764.2	3.5826	0.3431	100.0%	1334.1522	1334.4229	2	6.567	72.7%	1	K.SVDELITEGNEK.L	2

contaminant_KERATIN02

41.5%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.10107.10107.2	4.6422	0.4758	100.0%	1232.9122	1233.2833	1	8.738	86.7%	6	T.SGGGGGGGLGSGGSIR.S	2
*	PARC_hx4_04_itms.15342.15342.2	4.6116	0.5252	100.0%	2024.4521	2024.0703	1	10.035	41.3%	1	Y.SYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_hx4_03_itms.11340.11340.1	2.2153	0.2912	100.0%	1196.46	1197.2499	2	4.907	50.0%	1	F.SASSLGGGFGGGSR.G	1
*	PARC_hx4_04_itms.12149.12149.2	3.3121	0.481	100.0%	951.9522	952.01465	1	7.003	80.0%	2	S.SLGGGFGGGSR.G	2
*	PARC_hx4_03_itms.12443.12443.2	4.7045	0.3483	100.0%	1692.4521	1692.7826	1	6.796	57.9%	1	L.GGFGGGAGGGDGGILTANEK.S	2
*	PARC_hx4_02_itms.09554.09554.2	2.84	0.292	100.0%	1066.1721	1066.1742	10	5.812	81.2%	3	K.STMQELNSR.L	2
	PARC_hx4_02_itms.10712.10712.1	2.3162	0.1218	100.0%	809.56	809.93774	31	4.467	75.0%	1	R.LASYLDK.V	1 1 1 1 1 1 1
*	PARC_hx4_02_itms.11184.11184.1	3.0103	0.3075	100.0%	1586.75	1587.6836	3	5.937	46.2%	1	K.VQALEEANNDLENK.I	1
*	PARC_hx4_02_itms.11168.11168.2	5.6669	0.4459	100.0%	1586.8121	1587.6836	1	7.993	88.5%	3	K.VQALEEANNDLENK.I	2
*	PARC_hx4_04_itms.15669.15669.1	3.1935	0.2769	100.0%	1605.67	1606.7289	1	5.91	58.3%	2	K.NYSPYYNTIDDLK.D	1
*	PARC_hx4_04_itms.15704.15704.2	3.4269	0.2967	100.0%	1605.8922	1606.7289	1	6.349	83.3%	3	K.NYSPYYNTIDDLK.D	2
*	PARC_hx4_02_itms.11045.11045.1	2.3711	0.1749	100.0%	981.33	982.07825	1	4.143	71.4%	1	Y.YNTIDDLK.D	1
*	PARC_hx4_03_itms.12675.12675.1	2.6494	0.2427	100.0%	1315.45	1316.4539	1	5.034	63.6%	1	K.DQIVDLTVGNNK.T	1
*	PARC_hx4_03_itms.12690.12690.2	4.8727	0.3266	100.0%	1316.4722	1316.4539	1	6.928	86.4%	1	K.DQIVDLTVGNNK.T	2
*	PARC_hx4_03_itms.12981.12981.1	2.3726	0.1536	100.0%	1060.5	1061.1802	1	4.695	68.8%	1	K.TLLDIDNTR.M	1
*	PARC_hx4_03_itms.12971.12971.2	2.6808	0.1247	99.3%	1060.9321	1061.1802	1	3.968	87.5%	2	K.TLLDIDNTR.M	2
*	PARC_hx4_03_itms.13454.13454.2	2.0835	0.1715	98.9%	897.6922	898.02155	110	3.942	66.7%	1	R.MTLDDFR.I	2
*	PARC_hx4_02_itms.11492.11492.2	2.1416	0.151	98.6%	1066.9521	1067.2048	18	5.598	78.6%	1	K.FEMEQNLR.Q	2
*	PARC_hx4_02_itms.11469.11469.2	3.4881	0.2916	100.0%	1160.2522	1158.2566	1	5.836	85.0%	2	R.QGVDADINGLR.Q	2
*	PARC_hx4_04_itms.14306.14306.2	2.9092	0.1341	99.8%	1191.1322	1191.385	18	4.021	61.1%	2	R.QVLDNLTMEK.S	2
*	PARC_hx4_04_itms.22481.22481.2	5.5546	0.2597	100.0%	2171.5723	2172.4702	1	6.885	67.6%	1	K.SDLEMQYETLQEELMALK.K	2
*	PARC_hx4_04_itms.15323.15323.2	3.6541	0.2737	100.0%	2517.1921	2517.727	1	5.401	43.5%	1	K.EEMSQLTGQNSGDVNVEINVAPGK.D	2
*	PARC_hx4_04_itms.17571.17571.2	5.1985	0.4433	100.0%	1857.7322	1858.0587	1	7.973	76.7%	1	M.IQEQISNLEAQITDVR.Q	2
*	PARC_hx4_04_itms.18773.18773.2	5.2331	0.5062	100.0%	2094.8123	2096.308	1	9.045	59.4%	2	R.QEIECQNQEYSLLLSIK.M	2
*	PARC_hx4_04_itms.16451.16451.3	6.1911	0.3478	100.0%	2510.3643	2511.6177	1	7.36	36.4%	1	K.EIETYHNLLEGGQEDFESSGAGK.I	3
*	PARC_hx4_04_itms.16439.16439.2	4.8863	0.4014	100.0%	2512.392	2511.6177	1	7.331	54.5%	1	K.EIETYHNLLEGGQEDFESSGAGK.I	2

Similarities: contaminant_KERATIN03(1:25)
contaminant_KERATIN05(1:25)
contaminant_KERATIN08(1:25)
contaminant_KERATIN12(1:25)
contaminant_KERATIN07(1:25)
contaminant_KERATIN10(1:25)

contaminant_KERATIN13

102

39.5%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18999.18999.2	4.5596	0.4153	100.0%	1964.7122	1965.2542	1	6.852	56.2%	1	N.QSLLQPLNVEIDPEIQK.V	2
*	PARC_hx4_04_itms.19119.19119.2	3.8093	0.2462	100.0%	1836.5322	1837.1234	1	6.263	56.7%	2	Q.SLLQPLNVEIDPEIQK.V	2
*	PARC_hx4_04_itms.18033.18033.2	3.5613	0.219	98.5%	1749.5122	1750.0453	1	5.599	57.1%	1	S.LLQPLNVEIDPEIQK.V	2
*	PARC_hx4_04_itms.16680.16680.2	3.1597	0.3725	100.0%	1635.6921	1636.8859	1	6.294	69.2%	1	L.LQPLNVEIDPEIQK.V	2
*	PARC_hx4_04_itms.17366.17366.2	4.1678	0.3627	100.0%	1383.9521	1384.5315	1	6.418	81.8%	11	K.SLNNQFASFIDK.V	2
	PARC_hx4_03_itms.12789.12789.1	2.4806	0.1057	95.5%	827.37	827.95544	4	3.685	75.0%	1	Q.FASFIDK.V	1 1 1 1 1 1
	PARC_hx4_04_itms.13426.13426.2	4.5629	0.0087	99.8%	1476.1322	1476.6726	1	6.149	86.4%	3	R.FLEQQNQVLQTK.W	2 2
	PARC_hx4_04_itms.13463.13463.1	3.2571	0.0225	100.0%	1477.67	1476.6726	1	4.217	63.6%	2	R.FLEQQNQVLQTK.W	1 1
*	PARC_hx4_04_itms.17072.17072.2	4.7559	0.451	100.0%	1476.4321	1476.6293	1	7.589	90.9%	5	K.WELLQQVDTSTR.T	2
*	PARC_hx4_04_itms.17056.17056.1	2.2816	0.1696	100.0%	1476.78	1476.6293	2	4.876	50.0%	1	K.WELLQQVDTSTR.T	1
*	PARC_hx4_02_itms.11339.11339.2	3.6471	0.3041	100.0%	1290.3121	1290.416	1	5.508	80.0%	1	W.ELLQQVDTSTR.T	2
*	PARC_hx4_04_itms.18129.18129.1	2.4002	0.2849	100.0%	1383.45	1384.4875	1	5.882	55.0%	2	R.THNLEPYFESF.I	1
*	PARC_hx4_04_itms.18170.18170.2	3.238	0.252	100.0%	1383.6921	1384.4875	1	5.348	70.0%	2	R.THNLEPYFESF.I	2
*	PARC_hx4_03_itms.12875.12875.2	3.6597	0.334	100.0%	1302.4321	1301.4316	1	6.88	83.3%	2	K.NMQDMVEDYR.N	2
	PARC_hx4_02_itms.08900.08900.2	3.0627	0.1925	100.0%	1153.3722	1153.234	4	4.708	87.5%	5	R.NKYEDEINK.R	2 2 2
*	PARC_hx4_04_itms.13319.13319.2	3.805	0.2232	100.0%	1421.7322	1422.5809	1	5.497	86.4%	6	K.RTNAENEFVTIK.K	2
*	PARC_hx4_03_itms.12363.12363.2	3.4382	0.406	100.0%	1266.2522	1266.3934	1	6.428	85.0%	4	R.TNAENEFVTIK.K	2
*	PARC_hx4_03_itms.02907.02907.2	2.5159	0.3039	95.7%	1796.7722	1797.0148	1	5.382	50.0%	1	K.LDNLQQEIDFLTALY.Q	2
*	PARC_hx4_02_itms.09032.09032.1	2.79	0.2945	100.0%	1125.41	1126.2084	1	6.412	72.2%	4	K.AEAESLYQSK.Y	1
*	PARC_hx4_02_itms.09038.09038.2	3.4869	0.3252	100.0%	1127.1721	1126.2084	1	6.539	77.8%	2	K.AEAESLYQSK.Y	2
*	PARC_hx4_03_itms.12054.12054.1	2.704	0.2405	100.0%	1179.53	1180.303	5	4.718	66.7%	3	K.YEELQITAGR.H	1
*	PARC_hx4_04_itms.13292.13292.2	3.7922	0.2518	100.0%	1180.2322	1180.303	1	6.656	94.4%	5	K.YEELQITAGR.H	2
	PARC_hx4_02_itms.11588.11588.2	3.1692	0.1548	100.0%	974.3522	974.102	6	4.351	92.9%	2	K.IEISELNR.V	2 2
*	PARC_hx4_04_itms.13635.13635.2	4.8322	0.4041	100.0%	1845.5922	1846.0073	1	7.498	76.7%	5	K.KQISNLQQSISDAEQR.G	2
*	PARC_hx4_02_itms.12320.12320.2	4.853	0.4261	100.0%	1717.3922	1717.8333	1	8.19	78.6%	6	K.QISNLQQSISDAEQR.G	2
*	PARC_hx4_04_itms.15254.15254.2	5.1818	0.2854	100.0%	1358.0322	1358.4912	1	6.855	90.9%	8	K.LNDLEDALQQAK.E	2
*	PARC_hx4_04_itms.15216.15216.1	3.0545	0.2743	100.0%	1358.62	1358.4912	1	5.462	54.5%	2	K.LNDLEDALQQAK.E	1
*	PARC_hx4_02_itms.11542.11542.2	2.9795	0.2177	100.0%	1142.4722	1142.2689	3	5.546	81.2%	1	R.DYQELMNTK.L	2
*	PARC_hx4_02_itms.11568.11568.1	3.101	0.2319	100.0%	1143.35	1142.2689	2	5.111	75.0%	3	R.DYQELMNTK.L	1
*	PARC_hx4_02_itms.10364.10364.1	2.425	0.3206	100.0%	1033.51	1034.1112	17	5.15	50.0%	3	R.TLLEGEESR.M	1
*	PARC_hx4_02_itms.10346.10346.2	2.5015	0.1094	98.8%	1034.1122	1034.1112	2	3.85	81.2%	1	R.TLLEGEESR.M	2
*	PARC_hx4_03_itms.10054.10054.2	5.6779	0.2853	100.0%	2384.3323	2385.298	1	10.969	43.3%	5	R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G	2
*	PARC_hx4_04_itms.12027.12027.3	4.7165	0.4383	100.0%	3313.9744	3314.2085	1	7.17	20.4%	1	R.GSYGSGGGSYGSGGSSYGSGGGGGGHGSYGSGSSSGGYR.G	3

Similarities: contaminant_KERATIN21(1:32)
contaminant_KERATIN22(4:29)
contaminant_KERATIN18(1:32)
contaminant_KERATIN17(2:31)
contaminant_KERATIN15(1:32)
contaminant_KERATIN16(1:32)

contaminant_KERATIN05

38.2%

471

51531

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.11220.11220.1	2.1898	0.1656	100.0%	1106.51	1107.2181	2	4.949	65.0%	1	R.ISSVLAGGSCR.A	1
*	PARC_hx4_03_itms.11209.11209.2	3.6751	0.4462	100.0%	1106.5122	1107.2181	1	7.331	90.0%	1	R.ISSVLAGGSCR.A	2
	PARC_hx4_02_itms.10503.10503.2	2.9143	0.2184	100.0%	1092.3322	1091.2273	5	4.791	87.5%	3	K.VTMQNLNDR.L	2 2 2
	PARC_hx4_02_itms.10712.10712.1	2.3162	0.1218	100.0%	809.56	809.93774	31	4.467	75.0%	1	R.LASYLDK.V	1 1 1 1 1 1 1
	PARC_hx4_03_itms.10879.10879.2	3.4514	0.3442	100.0%	1301.1721	1302.4241	1	6.883	72.7%	1	R.ALEEANADLEVK.I	2 2 2 2
	PARC_hx4_02_itms.10832.10832.1	1.7519	0.1657	100.0%	807.44	807.8815	11	3.857	58.3%	1	R.LAADDFR.T	1 1 1 1 1 1
	PARC_hx4_02_itms.10857.10857.2	2.5052	0.1433	99.8%	808.1122	807.8815	2	4.677	83.3%	2	R.LAADDFR.T	2 2 2 2 2 2
*	PARC_hx4_02_itms.11628.11628.2	2.181	0.1898	99.1%	1039.9321	1038.1454	165	4.223	71.4%	1	K.YETELNLR.M	2
	PARC_hx4_04_itms.15374.15374.1	2.2701	0.2089	100.0%	1029.62	1030.2096	89	5.083	56.2%	2	R.VLDELTLAR.A	1 1 1 1 1
	PARC_hx4_04_itms.15368.15368.2	3.7512	0.2451	100.0%	1030.0721	1030.2096	1	5.656	93.8%	3	R.VLDELTLAR.A	2 2 2 2 2
*	PARC_hx4_04_itms.16557.16557.2	3.6407	0.3026	100.0%	1278.4922	1277.4755	1	5.651	80.0%	2	R.ADLEMQIESLK.E	2
	PARC_hx4_02_itms.11622.11622.1	2.3223	0.143	95.0%	865.51	866.0019	1	3.711	83.3%	1	K.EELAYLK.K	1 1 1 1
*	PARC_hx4_04_itms.15306.15306.2	3.9756	0.4903	100.0%	2086.0322	2087.269	1	8.256	50.0%	1	R.GQVGGDVNVEMDAAPGVDLSR.I	2
*	PARC_hx4_03_itms.16223.16223.1	2.5991	0.2458	100.0%	1172.42	1173.2671	1	5.702	68.8%	1	K.DAEEWFFTK.T	1
*	PARC_hx4_03_itms.16233.16233.2	3.59	0.3359	100.0%	1173.0521	1173.2671	1	6.458	87.5%	1	K.DAEEWFFTK.T	2
	PARC_hx4_02_itms.09010.09010.2	3.8684	0.4598	100.0%	1361.6721	1362.4796	1	8.19	75.0%	2	R.EVATNSELVQSGK.S	2 2
	PARC_hx4_02_itms.11044.11044.1	2.1624	0.0726	98.8%	1220.49	1221.3068	20	3.473	55.0%	1	K.ASLENSLEETK.G	1 1 1
	PARC_hx4_02_itms.11036.11036.2	3.3394	0.3186	100.0%	1220.6921	1221.3068	1	6.046	80.0%	1	K.ASLENSLEETK.G	2 2 2
	PARC_hx4_04_itms.16322.16322.2	4.0742	0.3467	100.0%	1343.3322	1343.523	1	6.301	81.8%	1	M.IGSVEEQLAQLR.C	2 2 2
	PARC_hx4_04_itms.14835.14835.2	3.3483	0.1427	100.0%	1380.5122	1380.5437	1	5.613	85.0%	3	K.TRLEQEIATYR.R	2 2 2 2 2
	PARC_hx4_02_itms.10815.10815.1	2.1175	0.0706	98.7%	1122.39	1123.2511	1	4.167	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1 1
	PARC_hx4_02_itms.10808.10808.2	3.2886	0.1594	100.0%	1123.9122	1123.2511	1	5.616	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2 2
*	PARC_hx4_04_itms.13588.13588.2	4.46	0.526	100.0%	2307.872	2310.396	1	8.893	47.6%	1	R.LLEGEDAHLSSSQFSSGSQSSR.D	2

Similarities: contaminant_KERATIN03(5:18)
contaminant_KERATIN02(1:22)
contaminant_KERATIN08(13:10)
contaminant_KERATIN12(11:12)
contaminant_KERATIN07(11:12)
contaminant_KERATIN10(8:15)
contaminant_KERATIN04(4:19)

YOR106W

36.7%

283

32498

7.0

VAM3 SGDID:S000005632, Chr XV from 519121-519972, Verified ORF, "Syntaxin-related protein required for vacuolar assembly; functions with Vam7p in vacuolar protein trafficking; member of the syntaxin family of proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.16367.16367.2	3.9664	0.3531	100.0%	1259.2522	1259.358	1	6.692	85.0%	1	M.SFFDIEAQSSK.G	2
*	PARC_hx4_02_itms.09353.09353.2	4.2544	0.2261	100.0%	1593.7522	1593.65	1	6.176	65.4%	7	K.GNSQQEPQFSTNQK.T	2
*	PARC_hx4_04_itms.20354.20354.2	5.3055	0.5041	100.0%	1636.6322	1637.7869	1	8.39	76.9%	13	K.ELSNLIETFAEQSR.V	2
*	PARC_hx4_04_itms.14519.14519.2	3.9763	0.2441	100.0%	1534.2722	1532.7002	4	5.424	79.2%	3	K.IETELIPNCTSVR.D	2
*	PARC_hx4_04_itms.13137.13137.2	3.8785	0.2954	100.0%	1366.5922	1366.5602	1	5.719	86.4%	2	K.IESNILIHQNGK.L	2
*	PARC_hx4_03_itms.10812.10812.2	3.5759	0.3447	100.0%	1415.5122	1415.5051	1	6.155	80.0%	4	K.YQSLQQSYNQR.K	2
*	PARC_hx4_03_itms.09502.09502.2	2.1565	0.1382	98.0%	888.09216	888.0086	1	3.757	81.2%	1	K.TPISPGTSK.E	2
*	PARC_hx4_02_itms.11798.11798.1	1.6718	0.1693	98.6%	1266.48	1267.3782	64	3.539	50.0%	1	R.QDPESSYISIK.V	1
*	PARC_hx4_02_itms.11788.11788.2	2.7327	0.3518	100.0%	1266.8322	1267.3782	2	5.354	65.0%	3	R.QDPESSYISIK.V	2
*	PARC_hx4_03_itms.10691.10691.1	2.1926	0.1698	95.8%	1010.49	1011.1228	254	4.726	62.5%	1	R.IHTAVQEVN.A	1

YDR382W

36.4%

110

11050

4.1

RPP2B SGDID:S000002790, Chr IV from 1239482-1239814, Verified ORF, "Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.15417.15417.2	4.4086	0.3691	100.0%	1639.6322	1638.9047	1	8.12	65.6%	2	Y.LLLVQGGNAAPSAADIK.A	2
*	PARC_hx4_04_itms.17031.17031.1	1.9628	0.1598	100.0%	1203.64	1203.3782	96	3.987	50.0%	1	R.INELLSSLEGK.G	1
*	PARC_hx4_04_itms.17024.17024.2	3.6433	0.1626	100.0%	1204.3121	1203.3782	2	4.938	85.0%	1	R.INELLSSLEGK.G	2
*	PARC_hx4_04_itms.15956.15956.2	3.7961	0.2555	100.0%	1274.3522	1274.4136	1	6.018	72.7%	2	K.GSLEEIIAEGQK.K	2

contaminant_KERATIN21

35.6%

357

39219

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_02_itms.11277.11277.2	1.8497	0.2572	98.9%	1017.0722	1017.1271	5	5.414	81.2%	1	R.QLDSIVGER.G	2 2 2
*	PARC_hx4_04_itms.17489.17489.1	2.6451	0.1978	100.0%	1182.36	1182.3337	3	4.784	66.7%	2	R.GMQDLVEDFK.N	1
*	PARC_hx4_04_itms.17466.17466.2	3.6792	0.2982	100.0%	1183.3722	1182.3337	1	6.2	83.3%	2	R.GMQDLVEDFK.N	2
	PARC_hx4_02_itms.08900.08900.2	3.0627	0.1925	100.0%	1153.3722	1153.234	4	4.708	87.5%	5	K.NKYEDEINK.R	2 2 2
	PARC_hx4_04_itms.14084.14084.2	3.1428	0.1968	100.0%	1379.3922	1379.5559	1	4.778	68.2%	1	K.RTAAENEFVTLK.K	2 2
	PARC_hx4_03_itms.12685.12685.2	3.1848	0.2643	100.0%	1224.4521	1223.3684	4	5.657	75.0%	2	R.TAAENEFVTLK.K	2 2
	PARC_hx4_03_itms.16912.16912.2	3.7082	0.2235	100.0%	1407.9521	1408.551	1	5.123	72.7%	4	K.ADTLTDEINFLR.A	2 2
	PARC_hx4_04_itms.18894.18894.1	1.9592	0.1224	98.6%	1408.53	1408.551	4	3.936	45.5%	1	K.ADTLTDEINFLR.A	1 1
	PARC_hx4_04_itms.20691.20691.1	3.1164	0.1653	100.0%	1329.69	1330.5211	1	4.689	68.2%	3	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx4_04_itms.20630.20630.2	4.7669	0.1939	100.0%	1332.5322	1330.5211	1	6.098	86.4%	10	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_hx4_02_itms.09400.09400.2	3.1018	0.1596	100.0%	1107.9122	1108.196	1	6.027	93.8%	4	K.AQYEEIAQR.S	2 2 2 2
	PARC_hx4_02_itms.11092.11092.2	3.1685	0.3357	100.0%	1213.1122	1213.2891	1	6.431	83.3%	1	R.AEAESWYQTK.Y	2 2
	PARC_hx4_02_itms.11127.11127.1	2.2501	0.3841	100.0%	1214.1	1213.2891	33	6.32	61.1%	1	R.AEAESWYQTK.Y	1 1
	PARC_hx4_03_itms.13627.13627.2	4.0278	0.4065	100.0%	1659.8922	1659.7625	1	7.678	67.9%	3	K.QCANLQAAIADAEQR.G	2 2
	PARC_hx4_04_itms.15466.15466.2	3.7668	0.2034	100.0%	1357.9321	1358.5345	1	5.125	81.8%	3	K.NKLEGLEDALQK.A	2 2
	PARC_hx4_03_itms.13020.13020.1	1.9766	0.1656	100.0%	1115.43	1116.2566	5	4.428	61.1%	1	K.LEGLEDALQK.A	1 1
	PARC_hx4_03_itms.13035.13035.2	3.5326	0.3385	100.0%	1116.2122	1116.2566	1	5.641	88.9%	1	K.LEGLEDALQK.A	2 2
*	PARC_hx4_04_itms.13239.13239.2	4.4233	0.4111	100.0%	1448.2722	1448.6163	1	7.978	71.9%	1	R.AIGGGLSSVGGGSSTIK.Y	2

Similarities: contaminant_KERATIN13(1:17)
contaminant_KERATIN22(3:15)
contaminant_KERATIN18(14:4)
contaminant_KERATIN17(4:14)
contaminant_KERATIN16(1:17)

YBL050W

34.9%

292

32803

5.1

SEC17 SGDID:S000000146, Chr II from 125128-125157,125274-126122, Verified ORF, "Peripheral membrane protein required for vesicular transport between ER and Golgi and for the 'priming' step in homotypic vacuole fusion, part of the cis-SNARE complex; has similarity to alpha-SNAP"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_02_itms.10877.10877.1	2.2427	0.1404	100.0%	1003.6	1004.08435	4	3.913	68.8%	1	K.LFSGSDSYK.F	1
*	PARC_hx4_04_itms.17102.17102.1	2.7429	0.2853	100.0%	1206.47	1207.369	1	5.328	60.0%	1	K.ELNLAGDSFLK.A	1
*	PARC_hx4_03_itms.15315.15315.2	2.7379	0.0902	98.6%	1207.8121	1207.369	1	3.966	75.0%	3	K.ELNLAGDSFLK.A	2
*	PARC_hx4_02_itms.10665.10665.2	4.1553	0.4069	100.0%	1860.0521	1859.9438	1	7.223	56.2%	1	K.KAGNEDEAGNTYVEAYK.C	2
*	PARC_hx4_02_itms.10893.10893.2	4.8657	0.5127	100.0%	1731.3922	1731.7698	1	8.648	73.3%	1	K.AGNEDEAGNTYVEAYK.C	2
*	PARC_hx4_04_itms.15140.15140.2	5.1032	0.4313	100.0%	1673.3121	1673.8169	1	7.783	78.6%	2	K.ALDGQYIEASDIYSK.L	2
*	PARC_hx4_04_itms.14894.14894.2	4.9366	0.3521	100.0%	1489.4122	1488.65	1	8.353	89.3%	1	K.GLCQLAATDAVAAAR.T	2
*	PARC_hx4_02_itms.09926.09926.3	3.1031	0.369	100.0%	2690.3044	2692.8154	5	5.622	20.0%	2	L.AATDAVAAARTLQEGQSEDPNFADSR.E	3
*	PARC_hx4_02_itms.10058.10058.2	5.4524	0.5036	100.0%	1794.2522	1794.829	1	9.7	80.0%	7	R.TLQEGQSEDPNFADSR.E	2
*	PARC_hx4_04_itms.14780.14780.2	4.6239	0.5283	100.0%	2130.5723	2132.2117	1	8.974	55.6%	2	K.SLIDAVNEGDSEQLSEHCK.E	2

YGL030W

34.3%

105

11415

9.8

RPL30 SGDID:S000002998, Chr VII from 439096-439098,439329-439643, Verified ORF, "Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.15285.15285.2	4.8486	0.4429	100.0%	1817.4321	1817.9957	1	8.623	75.0%	1	K.VYYFQGGNNELGTAVGK.L	2
*	PARC_hx4_04_itms.25115.25115.2	2.3866	0.1197	97.0%	1874.5521	1874.1388	1	4.124	47.2%	1	R.VGVVSILEAGDSDILTTLA.-	2

contaminant_KERATIN08

33.7%

469

50499

5.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_02_itms.10503.10503.2	2.9143	0.2184	100.0%	1092.3322	1091.2273	5	4.791	87.5%	3	K.VTMQNLNDR.L	2 2 2
	PARC_hx4_02_itms.10712.10712.1	2.3162	0.1218	100.0%	809.56	809.93774	31	4.467	75.0%	1	R.LASYLDK.V	1 1 1 1 1 1 1
	PARC_hx4_03_itms.10879.10879.2	3.4514	0.3442	100.0%	1301.1721	1302.4241	1	6.883	72.7%	1	R.ALEEANADLEVK.I	2 2 2 2
	PARC_hx4_02_itms.10832.10832.1	1.7519	0.1657	100.0%	807.44	807.8815	11	3.857	58.3%	1	R.LAADDFR.T	1 1 1 1 1 1
	PARC_hx4_02_itms.10857.10857.2	2.5052	0.1433	99.8%	808.1122	807.8815	2	4.677	83.3%	2	R.LAADDFR.T	2 2 2 2 2 2
	PARC_hx4_04_itms.15374.15374.1	2.2701	0.2089	100.0%	1029.62	1030.2096	89	5.083	56.2%	2	R.VLDELTLAR.T	1 1 1 1 1
	PARC_hx4_04_itms.15368.15368.2	3.7512	0.2451	100.0%	1030.0721	1030.2096	1	5.656	93.8%	3	R.VLDELTLAR.T	2 2 2 2 2
	PARC_hx4_04_itms.16330.16330.2	3.74	0.3273	100.0%	1276.7322	1277.4755	2	5.855	85.0%	2	R.TDLEMQIEGLK.E	2 2
*	PARC_hx4_04_itms.14699.14699.2	4.3993	0.4465	100.0%	2087.8123	2089.2415	1	7.947	45.0%	1	R.GQTGGDVNVEMDAAPGVDLSR.I	2
*	PARC_hx4_03_itms.15440.15440.1	2.4719	0.2913	100.0%	1096.37	1097.2126	1	5.503	75.0%	1	R.DAETWFLSK.T	1
*	PARC_hx4_03_itms.15483.15483.2	2.8422	0.2523	100.0%	1097.2122	1097.2126	1	5.476	81.2%	1	R.DAETWFLSK.T	2
	PARC_hx4_02_itms.11044.11044.1	2.1624	0.0726	98.8%	1220.49	1221.3068	20	3.473	55.0%	1	K.ASLENSLEETK.G	1 1 1
	PARC_hx4_02_itms.11036.11036.2	3.3394	0.3186	100.0%	1220.6921	1221.3068	1	6.046	80.0%	1	K.ASLENSLEETK.G	2 2 2
	PARC_hx4_04_itms.16322.16322.2	4.0742	0.3467	100.0%	1343.3322	1343.523	1	6.301	81.8%	1	L.IGSVEEQLAQLR.C	2 2 2
*	PARC_hx4_04_itms.17874.17874.2	3.8751	0.4193	100.0%	2141.4922	2142.3516	1	8.085	62.5%	1	R.CEMEQQSQEYQILLDVK.T	2
	PARC_hx4_04_itms.14835.14835.2	3.3483	0.1427	100.0%	1380.5122	1380.5437	1	5.613	85.0%	3	K.TRLEQEIATYR.R	2 2 2 2 2
	PARC_hx4_02_itms.10815.10815.1	2.1175	0.0706	98.7%	1122.39	1123.2511	1	4.167	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1 1
	PARC_hx4_02_itms.10808.10808.2	3.2886	0.1594	100.0%	1123.9122	1123.2511	1	5.616	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2 2
*	PARC_hx4_04_itms.12669.12669.2	3.85	0.4091	100.0%	2350.2922	2351.4485	1	7.122	47.6%	1	R.LLEGEDAHLSSQQASGQSYSSR.E	2

Similarities: contaminant_KERATIN03(4:15)
contaminant_KERATIN02(1:18)
contaminant_KERATIN05(13:6)
contaminant_KERATIN12(9:10)
contaminant_KERATIN07(11:8)
contaminant_KERATIN10(8:11)
contaminant_KERATIN04(4:15)

contaminant_KERATIN12

32.9%

431

47974

5.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.10587.10587.2	2.8246	0.2598	100.0%	1034.5521	1035.1112	1	4.872	70.0%	1	R.LSGGLGAGSCR.L	2
	PARC_hx4_02_itms.10712.10712.1	2.3162	0.1218	100.0%	809.56	809.93774	31	4.467	75.0%	1	R.LASYLDK.V	1 1 1 1 1 1 1
	PARC_hx4_02_itms.10832.10832.1	1.7519	0.1657	100.0%	807.44	807.8815	11	3.857	58.3%	1	R.LAADDFR.T	1 1 1 1 1 1
	PARC_hx4_02_itms.10857.10857.2	2.5052	0.1433	99.8%	808.1122	807.8815	2	4.677	83.3%	2	R.LAADDFR.T	2 2 2 2 2 2
	PARC_hx4_02_itms.10526.10526.2	2.6549	0.177	100.0%	994.7522	994.0923	2	4.684	85.7%	1	K.FETEQALR.L	2 2
*	PARC_hx4_04_itms.15132.15132.2	3.3144	0.3626	100.0%	1187.2122	1187.3384	1	6.32	80.0%	1	R.LSVEADINGLR.R	2
	PARC_hx4_04_itms.15374.15374.1	2.2701	0.2089	100.0%	1029.62	1030.2096	89	5.083	56.2%	2	R.VLDELTLAR.A	1 1 1 1 1
	PARC_hx4_04_itms.15368.15368.2	3.7512	0.2451	100.0%	1030.0721	1030.2096	1	5.656	93.8%	3	R.VLDELTLAR.A	2 2 2 2 2
*	PARC_hx4_04_itms.16282.16282.2	4.0734	0.2239	100.0%	1303.7922	1304.5011	4	5.001	80.0%	2	R.ADLEMQIENLK.E	2
	PARC_hx4_02_itms.11622.11622.1	2.3223	0.143	95.0%	865.51	866.0019	1	3.711	83.3%	1	K.EELAYLK.K	1 1 1 1
*	PARC_hx4_03_itms.16426.16426.2	3.4788	0.3103	100.0%	1145.0322	1145.2133	1	6.91	81.2%	1	K.DAEDWFFSK.T	2
*	PARC_hx4_03_itms.16411.16411.1	2.5864	0.3446	100.0%	1145.58	1145.2133	1	5.702	68.8%	1	K.DAEDWFFSK.T	1
	PARC_hx4_02_itms.09010.09010.2	3.8684	0.4598	100.0%	1361.6721	1362.4796	1	8.19	75.0%	2	R.EVATNSELVQSGK.S	2 2
*	PARC_hx4_02_itms.10955.10955.2	4.6613	0.4432	100.0%	1404.5922	1404.4764	1	8.166	79.2%	1	K.ASLEGNLAETENR.Y	2
	PARC_hx4_04_itms.16322.16322.2	4.0742	0.3467	100.0%	1343.3322	1343.523	1	6.301	81.8%	1	L.IGSVEEQLAQLR.C	2 2 2
	PARC_hx4_04_itms.14835.14835.2	3.3483	0.1427	100.0%	1380.5122	1380.5437	1	5.613	85.0%	3	K.TRLEQEIATYR.R	2 2 2 2 2
	PARC_hx4_02_itms.10815.10815.1	2.1175	0.0706	98.7%	1122.39	1123.2511	1	4.167	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1 1
	PARC_hx4_02_itms.10808.10808.2	3.2886	0.1594	100.0%	1123.9122	1123.2511	1	5.616	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2 2
*	PARC_hx4_04_itms.13392.13392.2	4.2195	0.4437	100.0%	1517.3322	1517.6787	1	7.8	79.2%	1	R.LLEGEDAHLTQYK.K	2

Similarities: contaminant_KERATIN03(4:15)
contaminant_KERATIN02(1:18)
contaminant_KERATIN05(11:8)
contaminant_KERATIN08(9:10)
contaminant_KERATIN07(8:11)
contaminant_KERATIN10(9:10)
contaminant_KERATIN04(3:16)

contaminant_UBIQUITIN08

32.9%

8565

7.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.16113.16113.2	4.2613	0.1979	100.0%	1791.5922	1788.9897	1	5.377	70.0%	4	K.TITLEVEPSDTIENVK.A	2
	PARC_hx4_02_itms.10854.10854.1	1.6715	0.1489	98.7%	1081.44	1082.1986	476	3.656	43.8%	1	R.TLSDYNIQK.E	1 1

Similarities: YIL148W(1:1)

YMR197C

32.3%

217

24668

6.6

VTI1 SGDID:S000004810, Chr XIII from 659197-658544, reverse complement, Verified ORF, "Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.11430.11430.2	3.9131	0.4014	100.0%	1455.2522	1455.6108	1	7.43	65.4%	1	K.ASLAEAPSQPLSQR.N	2
*	PARC_hx4_04_itms.13310.13310.2	3.0711	0.3748	100.0%	1343.0322	1343.4825	1	6.104	81.8%	4	K.RPLQSLVDSGDR.D	2
*	PARC_hx4_04_itms.15390.15390.2	5.4606	0.4138	100.0%	1694.5322	1693.7673	1	8.208	78.6%	6	R.LFGDLNASNIDDDQR.Q	2
*	PARC_hx4_04_itms.19230.19230.2	3.8181	0.4081	100.0%	1880.2922	1879.1536	1	6.706	56.2%	1	R.IANETEGIGSQIMMDLR.S	2
*	PARC_hx4_03_itms.13393.13393.2	3.4852	0.3042	100.0%	1415.4521	1415.5425	1	5.894	81.8%	3	R.QTLFQADSYVDK.S	2

contaminant_KERATIN22

31.0%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.10946.10946.1	2.5792	0.232	100.0%	1254.58	1255.3298	1	6.184	50.0%	1	R.GFSSGSAVVSGGSR.R	1
*	PARC_hx4_03_itms.10941.10941.2	4.7904	0.4787	100.0%	1256.2122	1255.3298	1	8.583	88.5%	4	R.GFSSGSAVVSGGSR.R	2
*	PARC_hx4_03_itms.11792.11792.1	1.9339	0.261	100.0%	831.48	831.9878	1	4.819	62.5%	2	R.SLVGLGGTK.S	1
*	PARC_hx4_04_itms.12808.12808.2	3.4016	0.2943	100.0%	1127.0122	1127.1613	1	6.325	69.2%	1	F.SGGGFGGGGFGGGR.F	2
	PARC_hx4_03_itms.12789.12789.1	2.4806	0.1057	95.5%	827.37	827.95544	4	3.685	75.0%	1	K.FASFIDK.V	1 1 1 1 1 1
	PARC_hx4_04_itms.13426.13426.2	4.5629	0.0087	99.8%	1476.1322	1476.6726	1	6.149	86.4%	3	R.FLEQQNQVLQTK.W	2 2
	PARC_hx4_04_itms.13463.13463.1	3.2571	0.0225	100.0%	1477.67	1476.6726	1	4.217	63.6%	2	R.FLEQQNQVLQTK.W	1 1
*	PARC_hx4_04_itms.14091.14091.2	4.1516	0.3618	100.0%	1194.9922	1194.3329	1	6.213	88.9%	1	K.RYLDGLTAER.T	2
*	PARC_hx4_02_itms.11783.11783.2	3.6097	0.2947	100.0%	1038.3522	1038.1454	1	6.309	100.0%	2	R.YLDGLTAER.T	2
*	PARC_hx4_04_itms.17427.17427.2	5.7992	0.4808	100.0%	2129.3523	2129.2598	1	9.408	61.8%	4	R.TSQNSELNNMQDLVEDYK.K	2
*	PARC_hx4_04_itms.16595.16595.2	3.7396	0.3741	100.0%	2256.5122	2257.4338	1	6.638	36.1%	1	R.TSQNSELNNMQDLVEDYKK.K	2
*	PARC_hx4_04_itms.13608.13608.2	3.0125	0.2221	100.0%	1368.2322	1365.529	4	4.398	63.6%	1	K.RTAAENDFVTLK.K	2
*	PARC_hx4_02_itms.12201.12201.1	2.409	0.2575	100.0%	1208.6	1209.3416	1	5.541	60.0%	2	R.TAAENDFVTLK.K	1
*	PARC_hx4_03_itms.12553.12553.2	3.267	0.362	100.0%	1210.1921	1209.3416	1	6.128	80.0%	2	R.TAAENDFVTLK.K	2
*	PARC_hx4_04_itms.20231.20231.1	2.6236	0.0865	100.0%	1460.71	1461.6982	1	4.536	59.1%	1	K.VDLLNQEIEFLK.V	1
*	PARC_hx4_04_itms.20283.20283.2	4.4964	0.0993	100.0%	1460.9321	1461.6982	1	6.344	86.4%	5	K.VDLLNQEIEFLK.V	2
	PARC_hx4_04_itms.20691.20691.1	3.1164	0.1653	100.0%	1329.69	1330.5211	1	4.689	68.2%	3	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx4_04_itms.20630.20630.2	4.7669	0.1939	100.0%	1332.5322	1330.5211	1	6.098	86.4%	10	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_hx4_02_itms.09400.09400.2	3.1018	0.1596	100.0%	1107.9122	1108.196	1	6.027	93.8%	4	K.AQYEEIAQR.S	2 2 2 2
*	PARC_hx4_02_itms.09303.09303.2	2.5742	0.2534	100.0%	1176.4722	1177.256	2	5.157	72.2%	2	K.EEAEALYHSK.Y	2
*	PARC_hx4_04_itms.13487.13487.1	2.058	0.1961	100.0%	1193.52	1194.33	1	3.655	66.7%	1	K.YEELQVTVGR.H	1
*	PARC_hx4_04_itms.13586.13586.2	3.9743	0.3146	100.0%	1194.0122	1194.33	1	6.679	94.4%	4	K.YEELQVTVGR.H	2
	PARC_hx4_02_itms.11588.11588.2	3.1692	0.1548	100.0%	974.3522	974.102	6	4.351	92.9%	2	K.IEISELNR.V	2 2
*	PARC_hx4_04_itms.09494.09494.2	2.3117	0.1067	98.0%	995.33215	995.16675	1	4.366	87.5%	3	R.LQGEIAHVK.K	2
*	PARC_hx4_02_itms.11630.11630.2	4.2046	0.3737	100.0%	1330.6122	1330.3971	1	7.502	86.4%	1	K.NVQDAIADAEQR.G	2
*	PARC_hx4_04_itms.15849.15849.1	2.2463	0.1698	100.0%	1371.64	1372.5181	2	4.543	59.1%	1	K.LNDLEEALQQAK.E	1
*	PARC_hx4_03_itms.14350.14350.2	5.2752	0.2633	100.0%	1373.4521	1372.5181	1	6.476	86.4%	6	K.LNDLEEALQQAK.E	2
	PARC_hx4_03_itms.12942.12942.1	3.0544	0.2551	100.0%	1139.53	1140.2965	3	5.306	75.0%	1	R.DYQELMNVK.L	1 1

Similarities: contaminant_KERATIN13(4:24)
contaminant_KERATIN21(3:25)
contaminant_KERATIN18(4:24)
contaminant_KERATIN17(3:25)
contaminant_KERATIN15(2:26)
contaminant_KERATIN16(2:26)

U	YBR031W	7	11	27.1%	362	39092	10.6	RPL4A SGDID:S000000235, Chr II from 300166-301254, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins"
U	YDR012W	7	11	27.1%	362	39062	10.6	RPL4B SGDID:S000002419, Chr IV from 471850-472938, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_02_itms.18399.18399.2	3.6037	0.4349	100.0%	1672.1122	1672.9188	1	7.42	68.8%	1	H.SLTGEATANALPLPAVF.S	2
PARC_hx4_03_itms.10547.10547.2	2.7056	0.3361	100.0%	1445.9321	1445.4911	1	6.841	61.5%	1	K.AGHQTSAESWGTGR.A	2
PARC_hx4_04_itms.21293.21293.2	3.9078	0.4093	100.0%	1883.8922	1882.2047	1	7.507	68.8%	3	K.IPEIPLVVSTDLESIQK.T	2
PARC_hx4_04_itms.12028.12028.2	2.9273	0.2637	100.0%	1011.15216	1011.16614	1	5.473	88.9%	2	K.AVGAHSDLLK.V	2
PARC_hx4_04_itms.16110.16110.2	4.5527	0.4209	100.0%	1474.2722	1474.697	1	8.829	69.2%	2	R.GPLVVYAEDNGIVK.A	2
PARC_hx4_04_itms.13858.13858.2	4.5899	0.5417	100.0%	1507.2722	1507.6403	1	9.014	76.9%	1	K.LDQVWGSETVASSK.V	2
PARC_hx4_04_itms.14314.14314.2	4.3086	0.3946	100.0%	1331.5922	1331.5118	1	6.94	86.4%	1	R.IINSSEIQSAIR.P	2

contaminant_KERATIN18

24.4%

562

59822

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.12508.12508.2	3.4776	0.4057	100.0%	1669.7922	1668.7324	1	7.208	50.0%	1	R.SRGSGGLGGACGGAGFGSR.S	2
*	PARC_hx4_04_itms.12530.12530.2	3.2917	0.4006	100.0%	1425.4122	1425.4668	1	7.107	56.2%	1	R.GSGGLGGACGGAGFGSR.S	2
	PARC_hx4_03_itms.12789.12789.1	2.4806	0.1057	95.5%	827.37	827.95544	4	3.685	75.0%	1	K.FASFIDK.V	1 1 1 1 1 1
	PARC_hx4_04_itms.15286.15286.2	3.3799	0.0726	99.8%	1203.9321	1204.3684	2	5.349	83.3%	2	K.WTLLQEQGTK.T	2 2
	PARC_hx4_02_itms.11277.11277.2	1.8497	0.2572	98.9%	1017.0722	1017.1271	5	5.414	81.2%	1	R.QLDSIVGER.G	2 2 2
*	PARC_hx4_03_itms.15385.15385.2	3.3143	0.1924	100.0%	1204.7922	1205.3685	7	4.837	77.8%	2	R.NMQDLVEDLK.N	2
	PARC_hx4_04_itms.14084.14084.2	3.1428	0.1968	100.0%	1379.3922	1379.5559	1	4.778	68.2%	1	K.RTAAENEFVTLK.K	2 2
	PARC_hx4_03_itms.12685.12685.2	3.1848	0.2643	100.0%	1224.4521	1223.3684	4	5.657	75.0%	2	R.TAAENEFVTLK.K	2 2
	PARC_hx4_03_itms.16912.16912.2	3.7082	0.2235	100.0%	1407.9521	1408.551	1	5.123	72.7%	4	K.ADTLTDEINFLR.A	2 2
	PARC_hx4_04_itms.18894.18894.1	1.9592	0.1224	98.6%	1408.53	1408.551	4	3.936	45.5%	1	K.ADTLTDEINFLR.A	1 1
	PARC_hx4_04_itms.20691.20691.1	3.1164	0.1653	100.0%	1329.69	1330.5211	1	4.689	68.2%	3	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx4_04_itms.20630.20630.2	4.7669	0.1939	100.0%	1332.5322	1330.5211	1	6.098	86.4%	10	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_hx4_02_itms.09400.09400.2	3.1018	0.1596	100.0%	1107.9122	1108.196	1	6.027	93.8%	4	K.AQYEEIAQR.S	2 2 2 2
	PARC_hx4_02_itms.11092.11092.2	3.1685	0.3357	100.0%	1213.1122	1213.2891	1	6.431	83.3%	1	R.AEAESWYQTK.Y	2 2
	PARC_hx4_02_itms.11127.11127.1	2.2501	0.3841	100.0%	1214.1	1213.2891	33	6.32	61.1%	1	R.AEAESWYQTK.Y	1 1
	PARC_hx4_03_itms.13627.13627.2	4.0278	0.4065	100.0%	1659.8922	1659.7625	1	7.678	67.9%	3	K.QCANLQAAIADAEQR.G	2 2
	PARC_hx4_04_itms.15466.15466.2	3.7668	0.2034	100.0%	1357.9321	1358.5345	1	5.125	81.8%	3	K.NKLEGLEDALQK.A	2 2
	PARC_hx4_03_itms.13020.13020.1	1.9766	0.1656	100.0%	1115.43	1116.2566	5	4.428	61.1%	1	K.LEGLEDALQK.A	1 1
	PARC_hx4_03_itms.13035.13035.2	3.5326	0.3385	100.0%	1116.2122	1116.2566	1	5.641	88.9%	1	K.LEGLEDALQK.A	2 2

Similarities: contaminant_KERATIN13(1:18)
contaminant_KERATIN21(14:5)
contaminant_KERATIN22(4:15)
contaminant_KERATIN17(5:14)
contaminant_KERATIN15(1:18)
contaminant_KERATIN16(2:17)

YGL212W

23.4%

316

36711

8.4

VAM7 SGDID:S000003180, Chr VII from 91436-92386, Verified ORF, "Component of the vacuole SNARE complex involved in vacuolar morphogenesis; SNAP-25 homolog; functions with a syntaxin homolog Vam3p in vacuolar protein trafficking"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.14475.14475.1	2.0611	0.1867	100.0%	1240.53	1241.4294	1	4.563	65.0%	1	K.YVLYGVSTPNK.R	1
*	PARC_hx4_04_itms.14458.14458.2	3.5682	0.3211	100.0%	1241.4521	1241.4294	1	7.027	90.0%	1	K.YVLYGVSTPNK.R	2
*	PARC_hx4_04_itms.15188.15188.1	2.0357	0.0562	95.3%	1183.45	1184.2938	192	3.424	56.2%	1	R.FLNELYNDR.F	1
*	PARC_hx4_03_itms.13553.13553.2	3.474	0.2284	100.0%	1184.3922	1184.2938	1	4.839	93.8%	4	R.FLNELYNDR.F	2
*	PARC_hx4_04_itms.16048.16048.2	3.6143	0.182	100.0%	1163.0721	1163.3593	1	5.109	77.8%	2	K.IAQDFLQLSK.P	2
*	PARC_hx4_03_itms.11841.11841.2	5.1675	0.4885	100.0%	1836.4122	1835.9658	1	10.716	64.7%	3	R.LLGVATSDNSSTTEVQGR.T	2
*	PARC_hx4_03_itms.11855.11855.2	3.9949	0.3115	100.0%	1338.6921	1338.463	1	6.852	85.0%	1	R.DQEQELVALHR.I	2
*	PARC_hx4_03_itms.16170.16170.2	3.2091	0.3864	100.0%	1660.5922	1661.7631	1	6.273	50.0%	1	N.ELLTALEDDVDNTGR.R	2

YOR234C

22.4%

107

12168

11.1

RPL33B SGDID:S000005760, Chr XV from 779405-779387,778859-778555, reverse complement, Verified ORF, "Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has similarity to rat L35a; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.16422.16422.2	2.355	0.1433	97.7%	1751.2322	1751.9768	7	3.906	43.3%	1	K.IEGVATPQEAQFYLGK.R	2
	PARC_hx4_02_itms.16214.16214.1	1.7047	0.1019	95.2%	966.37	967.1528	30	3.43	64.3%	1	R.IFLYPSNI.-	1 1

Similarities: YPL143W(1:1)

YPL143W

22.4%

107

12154

11.1

RPL33A SGDID:S000006064, Chr XVI from 282121-282139,282665-282969, Verified ORF, "N-terminally acetylated ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Bp and has similarity to rat L35a; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.16247.16247.2	3.5641	0.3558	100.0%	1740.1721	1737.95	1	6.746	60.0%	3	K.IEGVATPQDAQFYLGK.R	2
	PARC_hx4_02_itms.16214.16214.1	1.7047	0.1019	95.2%	966.37	967.1528	30	3.43	64.3%	1	R.IFLYPSNI.-	1 1

Similarities: YOR234C(1:1)

contaminant_KERATIN17

22.0%

590

62461

8.1

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.13541.13541.2	2.838	0.2707	100.0%	1410.4122	1411.5547	1	5.318	69.2%	2	R.SFSTASAITPSVSR.T	2
*	PARC_hx4_04_itms.13314.13314.2	4.2578	0.4106	100.0%	1411.1122	1411.5236	1	9.078	78.6%	1	R.VSLAGACGVGGYGSR.S	2
	PARC_hx4_03_itms.12789.12789.1	2.4806	0.1057	95.5%	827.37	827.95544	4	3.685	75.0%	1	K.FASFIDK.V	1 1 1 1 1 1
	PARC_hx4_04_itms.15286.15286.2	3.3799	0.0726	99.8%	1203.9321	1204.3684	2	5.349	83.3%	2	K.WTLLQEQGTK.T	2 2
	PARC_hx4_02_itms.11277.11277.2	1.8497	0.2572	98.9%	1017.0722	1017.1271	5	5.414	81.2%	1	R.QLDSIVGER.G	2 2 2
*	PARC_hx4_03_itms.15716.15716.2	4.081	0.1164	100.0%	1238.6122	1239.3856	2	6.523	88.9%	3	R.NMQDLVEDFK.N	2
*	PARC_hx4_04_itms.17591.17591.1	3.1225	0.1074	100.0%	1239.44	1239.3856	7	5.356	72.2%	1	R.NMQDLVEDFK.N	1
	PARC_hx4_02_itms.08900.08900.2	3.0627	0.1925	100.0%	1153.3722	1153.234	4	4.708	87.5%	5	K.NKYEDEINK.R	2 2 2
*	PARC_hx4_03_itms.14036.14036.2	3.019	0.2177	100.0%	1283.0122	1283.4822	7	5.424	65.0%	2	R.TTAENEFVMLK.K	2
*	PARC_hx4_04_itms.19487.19487.2	2.6314	0.2151	99.8%	1429.1721	1426.6858	1	5.376	68.2%	1	K.VDALMDEINFMK.M	2
	PARC_hx4_04_itms.20691.20691.1	3.1164	0.1653	100.0%	1329.69	1330.5211	1	4.689	68.2%	3	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx4_04_itms.20630.20630.2	4.7669	0.1939	100.0%	1332.5322	1330.5211	1	6.098	86.4%	10	R.NLDLDSIIAEVK.A	2 2 2 2
*	PARC_hx4_02_itms.10282.10282.2	3.0333	0.2256	98.5%	1228.9722	1229.3353	1	4.856	75.0%	1	N.LQNAIADAEQR.G	2
*	PARC_hx4_03_itms.13081.13081.1	2.244	0.0823	98.7%	1143.18	1144.3104	34	3.851	55.6%	1	K.LAELEEALQK.A	1
*	PARC_hx4_03_itms.13066.13066.2	3.986	0.2539	100.0%	1144.0521	1144.3104	1	5.109	88.9%	1	K.LAELEEALQK.A	2

Similarities: contaminant_KERATIN13(2:13)
contaminant_KERATIN21(4:11)
contaminant_KERATIN22(3:12)
contaminant_KERATIN18(5:10)
contaminant_KERATIN15(1:14)
contaminant_KERATIN16(1:14)

U	YIL148W	2	3	19.5%	128	14554	9.8	RPL40A SGDID:S000001410, Chr IX from 68708-68715,69150-69528, Verified ORF, "Fusion protein, identical to Rpl40Bp, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes"
U	YLR167W	2	3	16.4%	152	17216	9.9	RPS31 SGDID:S000004157, Chr XII from 498949-499407, Verified ORF, "Fusion protein that is cleaved to yield a ribosomal protein of the small (40S) subunit and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B"
U	YLL039C	2	15	6.6%	381	42826	7.6	UBI4 SGDID:S000003962, Chr XII from 65206-64061, reverse complement, Verified ORF, "Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response"
U	YKR094C	2	3	19.5%	128	14554	9.8	RPL40B SGDID:S000001802, Chr XI from 618392-618385,618016-617638, reverse complement, Verified ORF, "Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.15400.15400.2	4.7821	0.4112	100.0%	1765.5322	1764.9244	1	7.912	70.0%	2	K.TITLEVESSDTIDNVK.S	2
	PARC_hx4_02_itms.10854.10854.1	1.6715	0.1489	98.7%	1081.44	1082.1986	476	3.656	43.8%	1	R.TLSDYNIQK.E	1 1

Similarities: contaminant_UBIQUITIN08(1:1)

U	YMR194W	3	3	19.0%	100	11124	11.6	RPL36A SGDID:S000004807, Chr XIII from 651144-651159,651623-651909, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Bp and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA"
U	YPL249C-A	3	3	19.0%	100	11135	11.6	RPL36B SGDID:S000006438, Chr XVI from 76239-76224,75985-75699, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similarity to rat L36 ribosomal protein; binds to 5.8 S rRNA"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_04_itms.13709.13709.1	2.4406	0.0759	100.0%	886.56	887.0672	1	4.734	75.0%	1	K.TGIAIGLNK.G	1
PARC_hx4_04_itms.13716.13716.2	2.9253	0.1344	99.8%	887.09216	887.0672	2	4.674	87.5%	1	K.TGIAIGLNK.G	2
PARC_hx4_03_itms.12366.12366.2	2.4876	0.1792	99.4%	1134.6122	1135.2621	2	4.21	72.2%	1	R.EIAGLSPYER.R	2

U	YDL082W	2	3	17.6%	199	22554	11.2	RPL13A SGDID:S000002240, Chr IV from 308424-308427,308793-309388, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Bp; not essential for viability; has similarity to rat L13 ribosomal protein"
U	YMR142C	2	3	17.6%	199	22525	11.1	RPL13B SGDID:S000004750, Chr XIII from 551206-551203,550800-550205, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.12519.12519.2	2.8429	0.1909	100.0%	982.1122	982.1276	1	5.555	87.5%	2	R.TIGIAVDHR.R	2
	PARC_hx4_04_itms.19594.19594.2	4.3244	0.501	100.0%	2655.5522	2654.9365	1	7.843	32.0%	1	K.APEAEQVLSAAATFPIAQPATDVEAR.A	2

contaminant_gi|7463016|pir||S77957

16.7%

269

27961

6.7

lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.13629.13629.2	3.4924	0.3532	100.0%	1491.0122	1491.5688	1	6.947	85.0%	1	V.VYWNYQNSTCR.A	2
*	PARC_hx4_04_itms.11762.11762.2	3.254	0.4033	100.0%	1228.8322	1229.2604	1	6.606	100.0%	3	Y.WNYQNSTCR.A	2
*	PARC_hx4_02_itms.11271.11271.2	5.2133	0.479	100.0%	1748.8522	1749.8718	1	8.341	70.6%	3	S.GGVTEPGSSGSPIYSPEK.R	2
*	PARC_hx4_04_itms.15048.15048.1	3.0902	0.3048	100.0%	1307.07	1306.4149	2	5.663	58.3%	1	E.PGSSGSPIYSPEK.R	1
*	PARC_hx4_02_itms.10458.10458.1	2.1855	0.2225	100.0%	1151.41	1152.2462	4	5.244	55.0%	1	G.SSGSPIYSPEK.R	1
*	PARC_hx4_02_itms.10444.10444.2	2.7499	0.2606	98.5%	1152.3121	1152.2462	2	5.884	65.0%	1	G.SSGSPIYSPEK.R	2
*	PARC_hx4_02_itms.10484.10484.1	2.3161	0.2639	100.0%	1064.53	1065.1681	3	5.183	55.6%	1	S.SGSPIYSPEK.R	1
*	PARC_hx4_04_itms.12338.12338.2	2.9321	0.2973	100.0%	965.1122	965.0971	1	5.623	77.8%	1	R.VLGQLHGGPS.S	2
*	PARC_hx4_04_itms.12390.12390.1	2.574	0.3921	100.0%	1051.59	1052.1753	1	6.509	60.0%	2	R.VLGQLHGGPSS.C	1
*	PARC_hx4_04_itms.12258.12258.2	3.6972	0.2657	100.0%	1055.1322	1052.1753	1	6.158	85.0%	4	R.VLGQLHGGPSS.C	2
*	PARC_hx4_04_itms.12314.12314.2	4.0628	0.4605	100.0%	1211.6322	1212.3141	1	8.409	95.5%	3	R.VLGQLHGGPSSC.S	2
*	PARC_hx4_04_itms.12330.12330.1	3.1389	0.3227	100.0%	1213.55	1212.3141	1	6.805	63.6%	2	R.VLGQLHGGPSSC.S	1
*	PARC_hx4_04_itms.12410.12410.2	3.5171	0.3338	100.0%	1369.7522	1370.4711	1	7.754	80.8%	1	R.VLGQLHGGPSSCSA.T	2
*	PARC_hx4_04_itms.12392.12392.2	3.4802	0.466	100.0%	1471.3322	1471.5762	1	7.449	60.7%	1	R.VLGQLHGGPSSCSAT.G	2
*	PARC_hx4_04_itms.12430.12430.2	3.5993	0.4248	100.0%	1527.5721	1528.628	1	7.289	60.0%	1	R.VLGQLHGGPSSCSATG.A	2

U	YHL033C	4	6	16.4%	256	28125	10.0	RPL8A SGDID:S000001025, Chr VIII from 36023-35253, reverse complement, Verified ORF, "Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits"
U	YLL045C	4	6	16.4%	256	28112	10.0	RPL8B SGDID:S000003968, Chr XII from 48628-47858, reverse complement, Verified ORF, "Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_04_itms.13652.13652.2	3.9149	0.3049	100.0%	1159.2322	1159.3304	1	6.178	85.0%	2	K.NFGIGQAVQPK.R	2
PARC_hx4_03_itms.10872.10872.2	2.2761	0.2783	100.0%	873.1922	873.0403	2	5.362	92.9%	1	R.LGTLVNQK.T	2
PARC_hx4_03_itms.12858.12858.2	4.0913	0.374	100.0%	1118.4321	1118.2755	1	7.775	90.0%	2	K.TSAVAALTEVR.A	2
PARC_hx4_04_itms.14313.14313.2	3.523	0.3372	100.0%	1294.0521	1294.4473	1	6.785	77.3%	1	K.LVSTIDANFADK.Y	2

contaminant_KERATIN07

16.1%

473

50915

5.5

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_02_itms.10712.10712.1	2.3162	0.1218	100.0%	809.56	809.93774	31	4.467	75.0%	1	R.LASYLDK.V	1 1 1 1 1 1 1
	PARC_hx4_03_itms.10879.10879.2	3.4514	0.3442	100.0%	1301.1721	1302.4241	1	6.883	72.7%	1	R.ALEEANADLEVK.I	2 2 2 2
*	PARC_hx4_04_itms.17940.17940.2	2.9764	0.2175	100.0%	2066.7122	2065.3774	1	5.002	47.2%	1	K.IIAATIENAQPILQIDNAR.L	2
	PARC_hx4_02_itms.10832.10832.1	1.7519	0.1657	100.0%	807.44	807.8815	11	3.857	58.3%	1	R.LAADDFR.T	1 1 1 1 1 1
	PARC_hx4_02_itms.10857.10857.2	2.5052	0.1433	99.8%	808.1122	807.8815	2	4.677	83.3%	2	R.LAADDFR.T	2 2 2 2 2 2
	PARC_hx4_04_itms.15374.15374.1	2.2701	0.2089	100.0%	1029.62	1030.2096	89	5.083	56.2%	2	R.VLDELTLAR.T	1 1 1 1 1
	PARC_hx4_04_itms.15368.15368.2	3.7512	0.2451	100.0%	1030.0721	1030.2096	1	5.656	93.8%	3	R.VLDELTLAR.T	2 2 2 2 2
	PARC_hx4_02_itms.11044.11044.1	2.1624	0.0726	98.8%	1220.49	1221.3068	20	3.473	55.0%	1	K.ASLENSLEETK.G	1 1 1
	PARC_hx4_02_itms.11036.11036.2	3.3394	0.3186	100.0%	1220.6921	1221.3068	1	6.046	80.0%	1	K.ASLENSLEETK.G	2 2 2
	PARC_hx4_04_itms.14835.14835.2	3.3483	0.1427	100.0%	1380.5122	1380.5437	1	5.613	85.0%	3	K.TRLEQEIATYR.R	2 2 2 2 2
	PARC_hx4_02_itms.10815.10815.1	2.1175	0.0706	98.7%	1122.39	1123.2511	1	4.167	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1 1
	PARC_hx4_02_itms.10808.10808.2	3.2886	0.1594	100.0%	1123.9122	1123.2511	1	5.616	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2 2

YGL103W

16.1%

149

16722

10.6

RPL28 SGDID:S000003071, Chr VII from 310970-311018,311530-311930, Verified ORF, "Ribosomal protein L29 of the large (60S) ribosomal subunit, has similarity to E. coli L15 and rat L27a ribosomal proteins; may have peptidyl transferase activity; can mutate to cycloheximide resistance"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18119.18119.2	2.384	0.04	96.6%	1115.3522	1115.3147	23	3.412	75.0%	1	K.LWTLIPEDK.R	2
*	PARC_hx4_04_itms.16366.16366.2	3.1927	0.4288	100.0%	1508.2122	1506.6958	1	7.069	60.7%	3	K.ETAPVIDTLAAGYGK.I	2

U	YJL177W	2	2	15.8%	184	20551	10.9	RPL17B SGDID:S000003713, Chr X from 90784-91092,91410-91655, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins"
U	YKL180W	2	2	15.8%	184	20549	10.9	RPL17A SGDID:S000001663, Chr XI from 109274-109582,109889-110134, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the components of the outer kinetochore DASH complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.15161.15161.2	3.0707	0.2528	100.0%	1463.4122	1461.6146	1	5.204	62.5%	1	R.ETAQAINGWELTK.A	2
	PARC_hx4_04_itms.15838.15838.2	4.7889	0.3473	100.0%	1646.2722	1645.8558	1	7.299	70.0%	1	K.FVQGLLQNAAANAEAK.G	2

YOL127W

15.5%

142

15758

10.1

RPL25 SGDID:S000005487, Chr XV from 80347-80359,80774-81189, Verified ORF, "Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins; binds to 26S rRNA via a conserved C-terminal motif"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.14257.14257.1	2.9309	0.0991	100.0%	1107.57	1108.2769	6	4.319	75.0%	1	K.ELYEVDVLK.V	1
*	PARC_hx4_03_itms.13956.13956.2	4.7574	0.464	100.0%	1451.1921	1451.576	1	8.812	83.3%	2	R.LTADYDALDIANR.I	2

YDR229W

15.0%

453

49976

5.0

IVY1 SGDID:S000002637, Chr IV from 924779-926140, Verified ORF, "Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.14478.14478.2	2.6997	0.0606	96.9%	1775.1322	1773.8156	1	3.985	67.9%	1	R.VDWDNGNHFDVSPDR.Y	2
*	PARC_hx4_03_itms.14466.14466.2	3.4215	0.3679	100.0%	1261.9922	1261.4178	1	6.259	70.0%	3	K.ETQEALSTLLR.N	2
*	PARC_hx4_04_itms.26493.26493.2	3.069	0.3616	100.0%	2634.7722	2631.8523	1	6.079	38.1%	1	K.YFNDLLGDNLIDDIDEFELQTK.I	2
*	PARC_hx4_04_itms.21413.21413.2	3.19	0.3079	100.0%	2139.4521	2140.2336	1	6.602	44.7%	1	K.GWSGGGLDELLCDADDPFSK.K	2

U	YLR448W	3	3	14.8%	176	19986	10.1	RPL6B SGDID:S000004440, Chr XII from 1028849-1028863,1029248-1029763, Verified ORF, "Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA"
U	YML073C	3	3	14.8%	176	19961	10.1	RPL6A SGDID:S000004538, Chr XIII from 124172-124158,123742-123227, reverse complement, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein; binds to 5.8S rRNA"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_03_itms.10614.10614.1	1.8356	0.1339	98.6%	882.5	883.0324	12	4.071	71.4%	1	R.YVIATSTK.V	1
PARC_hx4_02_itms.10956.10956.2	2.9296	0.2859	100.0%	1060.3722	1060.1925	1	6.298	83.3%	1	K.VSVEGVNVEK.F	2
PARC_hx4_04_itms.15798.15798.2	2.8129	0.1897	100.0%	1017.4122	1018.15704	1	4.74	85.7%	1	K.FNVEYFAK.E	2

contaminant_KERATIN10

14.5%

400

44106

5.1

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_02_itms.10712.10712.1	2.3162	0.1218	100.0%	809.56	809.93774	31	4.467	75.0%	1	R.LASYLDK.V	1 1 1 1 1 1 1
PARC_hx4_02_itms.10832.10832.1	1.7519	0.1657	100.0%	807.44	807.8815	11	3.857	58.3%	1	R.LAADDFR.T	1 1 1 1 1 1
PARC_hx4_02_itms.10857.10857.2	2.5052	0.1433	99.8%	808.1122	807.8815	2	4.677	83.3%	2	R.LAADDFR.T	2 2 2 2 2 2
PARC_hx4_02_itms.10526.10526.2	2.6549	0.177	100.0%	994.7522	994.0923	2	4.684	85.7%	1	K.FETEQALR.M	2 2
PARC_hx4_04_itms.15374.15374.1	2.2701	0.2089	100.0%	1029.62	1030.2096	89	5.083	56.2%	2	R.VLDELTLAR.T	1 1 1 1 1
PARC_hx4_04_itms.15368.15368.2	3.7512	0.2451	100.0%	1030.0721	1030.2096	1	5.656	93.8%	3	R.VLDELTLAR.T	2 2 2 2 2
PARC_hx4_04_itms.16330.16330.2	3.74	0.3273	100.0%	1276.7322	1277.4755	2	5.855	85.0%	2	R.TDLEMQIEGLK.E	2 2
PARC_hx4_02_itms.11622.11622.1	2.3223	0.143	95.0%	865.51	866.0019	1	3.711	83.3%	1	K.EELAYLK.K	1 1 1 1
PARC_hx4_02_itms.10815.10815.1	2.1175	0.0706	98.7%	1122.39	1123.2511	1	4.167	75.0%	1	R.LEQEIATYR.S	1 1 1 1 1 1
PARC_hx4_02_itms.10808.10808.2	3.2886	0.1594	100.0%	1123.9122	1123.2511	1	5.616	93.8%	1	R.LEQEIATYR.S	2 2 2 2 2 2

U	YHL001W	2	2	13.8%	138	15153	10.9	RPL14B SGDID:S000000993, Chr VIII from 104272-104400,104799-105086, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similarity to rat L14 ribosomal protein"
U	YKL006W	2	2	13.8%	138	15167	10.9	RPL14A SGDID:S000001489, Chr XI from 431549-431677,432076-432363, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Bp and has similarity to rat L14 ribosomal protein; rpl14a csh5 double null mutant exhibits synthetic slow growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.18161.18161.2	3.7826	0.3278	100.0%	1213.6522	1213.46	1	6.299	85.0%	1	K.LAAIVEIIDQK.K	2
	PARC_hx4_02_itms.11780.11780.1	1.6418	0.1413	98.7%	922.49	923.0135	20	3.641	50.0%	1	R.AALTDFER.F	1

YML028W

12.8%

196

21590

5.1

TSA1 SGDID:S000004490, Chr XIII from 220138-220728, Verified ORF, "Ubiquitous housekeeping thioredoxin peroxidase, reduces reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; mediates redox regulation of the nuclear localization of Yap1p; deletion results in mutator phenotype"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.17835.17835.2	4.5421	0.4583	100.0%	1594.3922	1594.7588	1	9.163	75.0%	2	K.TAVVDGVFDEVSLDK.Y	2
*	PARC_hx4_04_itms.16548.16548.2	3.9536	0.284	100.0%	1237.3121	1237.3977	1	6.937	88.9%	1	R.LVEAFQWTDK.N	2

YBR221C

12.3%

366

40054

5.3

PDB1 SGDID:S000000425, Chr II from 666248-665148, reverse complement, Verified ORF, "E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved multi-protein complex found in mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.18033.18033.2	3.0485	0.2526	100.0%	2147.132	2147.3025	1	5.73	50.0%	1	R.DDDVFLIGEEVAQYNGAYK.V	2
*	PARC_hx4_04_itms.15640.15640.2	2.5485	0.2735	100.0%	1221.0122	1221.3989	1	5.306	70.0%	1	K.YGVSAEVINLR.S	2
*	PARC_hx4_04_itms.18968.18968.2	3.1201	0.2002	100.0%	1722.4722	1722.9324	3	5.496	46.4%	2	K.ELEDFAFPDTPTIVK.A	2

YLR447C

11.6%

345

39791

4.6

VMA6 SGDID:S000004439, Chr XII from 1027889-1026852, reverse complement, Verified ORF, "Subunit D of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found in the endomembrane system; stabilizes VO subunits; required for V1 domain assembly on the vacuolar membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.19481.19481.2	3.4097	0.1825	100.0%	2568.132	2567.7786	1	5.038	35.7%	1	R.NGLLSNNQYINLTQCDTLEDLK.L	2
*	PARC_hx4_04_itms.19599.19599.2	3.5739	0.2725	100.0%	2198.6921	2199.36	1	6.612	61.8%	1	K.NCFDTAEELDDMNIEIIR.N	2

U	YGL076C	2	3	11.1%	244	27638	10.1	RPL7A SGDID:S000003044, Chr VII from 365999-365989,365529-365436,364967-364338, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Bp and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"
U	YPL198W	2	3	11.1%	244	27696	10.1	RPL7B SGDID:S000006119, Chr XVI from 173151-173161,173571-173664,174072-174701, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Ap and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.16184.16184.2	4.4382	0.4463	100.0%	1553.4521	1554.7838	1	8.967	82.1%	2	R.VPLSDNAIIEANLGK.Y	2
	PARC_hx4_04_itms.13876.13876.2	2.7672	0.2939	100.0%	1226.6322	1227.3652	1	5.83	77.3%	1	K.LSNPSGGWGVPR.K	2

YKL196C

11.0%

200

22707

5.7

YKT6 SGDID:S000001679, Chr XI from 75539-74937, reverse complement, Verified ORF, "Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.19371.19371.2	3.5606	0.3168	100.0%	1245.8722	1246.3647	1	5.938	88.9%	1	K.DLSQFGFFER.S	2
*	PARC_hx4_04_itms.15228.15228.2	3.2554	0.3799	100.0%	1291.9521	1292.4382	2	6.871	77.3%	1	R.SEGICGVLITDK.E	2

YLL024C

10.5%

639

69470

5.1

SSA2 SGDID:S000003947, Chr XII from 97484-95565, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_02_itms.10230.10230.2	2.8363	0.0809	98.6%	1215.5122	1215.3085	5	3.675	70.0%	1	R.VDIIANDQGNR.T	2
*	PARC_hx4_04_itms.15735.15735.2	2.9826	0.389	100.0%	1457.6721	1458.5676	1	6.236	70.8%	1	R.TTPSFVGFTDTER.L	2
	PARC_hx4_04_itms.16432.16432.2	3.1876	0.3843	100.0%	1895.6921	1896.0667	1	5.968	43.8%	1	K.VNDAVVTVPAYFNDSQR.Q	2
	PARC_hx4_04_itms.17129.17129.2	4.7445	0.4895	100.0%	1661.3922	1660.9078	1	8.529	80.0%	1	R.IINEPTAAAIAYGLDK.K	2
	PARC_hx4_04_itms.18185.18185.2	3.416	0.3219	100.0%	1300.4122	1300.4198	1	6.035	83.3%	1	R.FEELCADLFR.S	2

contaminant_INT-STD1

10.2%

607

69271

6.1

BSA

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.15938.15938.1	2.6213	0.1858	100.0%	1163.57	1164.344	1	5.711	72.2%	1	K.LVNELTEFAK.T	1
*	PARC_hx4_04_itms.15928.15928.2	3.1396	0.178	100.0%	1164.3522	1164.344	1	5.199	88.9%	1	K.LVNELTEFAK.T	2
*	PARC_hx4_03_itms.16606.16606.2	2.5722	0.1397	98.5%	1957.6122	1957.1443	1	4.293	52.9%	2	K.DAIPENLPPLTADFAEDK.D	2
*	PARC_hx4_04_itms.17891.17891.2	3.9731	0.3282	100.0%	1480.2922	1480.7068	1	6.295	66.7%	2	K.LGEYGFQNALIVR.Y	2
*	PARC_hx4_04_itms.14940.14940.2	3.3706	0.3505	100.0%	1514.5521	1512.7465	1	7.069	76.9%	1	K.VPQVSTPTLVEVSR.S	2
*	PARC_hx4_04_itms.11892.11892.2	2.3972	0.0897	98.6%	898.6722	899.0441	3	3.361	91.7%	2	R.LCVLHEK.T	2

YJL172W

9.5%

576

64597

5.5

CPS1 SGDID:S000003708, Chr X from 97731-99461, Verified ORF, "Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.22167.22167.2	4.987	0.3889	100.0%	2319.5322	2319.4988	1	7.681	57.5%	1	R.YGDDGIYSIIDEGEGIMEVDK.D	2
*	PARC_hx4_03_itms.12513.12513.2	3.1253	0.3563	100.0%	1315.5721	1316.4973	1	5.989	66.7%	1	R.TTQAVDIINGGVK.A	2
*	PARC_hx4_04_itms.21946.21946.2	2.4912	0.2431	99.8%	2397.4521	2398.675	3	5.032	30.0%	1	K.NGDDYIIPETELGHIDITLLR.E	2

U	YJL034W	4	7	9.1%	682	74468	4.9	KAR2 SGDID:S000003571, Chr X from 381243-383291, Verified ORF, "ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p"
U	contaminant_GR78_YEAST	4	7	9.1%	682	74468	4.9	owl\|P16474\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_04_itms.15023.15023.2	3.5621	0.4043	100.0%	1514.4122	1514.6317	1	7.044	70.8%	2	R.ITPSYVAFTDDER.L	2
PARC_hx4_04_itms.16268.16268.2	4.9843	0.3737	100.0%	1673.3922	1673.8662	1	8.073	85.7%	2	K.NQVAANPQNTIFDIK.R	2
PARC_hx4_04_itms.16514.16514.2	4.8742	0.4915	100.0%	1645.7522	1646.881	1	9.072	76.7%	2	R.IVNEPTAAAIAYGLDK.S	2
PARC_hx4_04_itms.21786.21786.2	2.1565	0.1576	97.1%	2026.2322	2024.2323	1	3.998	50.0%	1	R.IEIDSFVDGIDLSETLTR.A	2

YHR052W

9.0%

376

42530

8.8

CIC1 SGDID:S000001094, Chr VIII from 210842-211972, Verified ORF, "Essential protein that interacts with proteasome components and has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18912.18912.2	3.8682	0.3979	100.0%	1572.1322	1572.8395	1	7.451	71.4%	1	F.SLILADDSIVTSLPK.L	2
*	PARC_hx4_04_itms.21180.21180.2	3.3044	0.4217	100.0%	2206.2522	2207.485	1	7.041	41.7%	1	R.SPVLPLYYNQDVLDELEAK.K	2

YDR481C

8.0%

566

63004

5.6

PHO8 SGDID:S000002889, Chr IV from 1420240-1418540, reverse complement, Verified ORF, "Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.15587.15587.2	4.9651	0.422	100.0%	1966.7922	1967.0587	1	8.239	62.5%	4	R.DLIDEAQSNGWQYVGDR.K	2
*	PARC_hx4_03_itms.17236.17236.2	2.8685	0.2005	99.8%	1459.8121	1459.6166	2	5.059	62.5%	1	K.DSNGFFLMVEGSR.I	2
*	PARC_hx4_03_itms.09962.09962.2	3.5902	0.4884	100.0%	1646.4122	1645.7317	1	7.95	75.0%	2	R.IDHAGHQNDPASQVR.E	2

YGR086C

8.0%

339

38349

4.6

PIL1 SGDID:S000003318, Chr VII from 650621-649602, reverse complement, Verified ORF, "Long chain base-responsive inhibitor of protein kinases Pkh1p and Pkh2p, acts along with Lsp1p to down-regulate heat stress resistance via regulation of the Pkc1p and Ypk1p pathways; phosphorylated by Phk1p and Phk2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.15935.15935.2	2.9527	0.2248	100.0%	1228.4922	1228.4313	2	4.828	83.3%	1	K.IEVLEQELVR.A	2
	PARC_hx4_04_itms.16803.16803.2	3.6616	0.3502	100.0%	1801.1721	1802.9792	1	6.873	56.2%	1	R.AEAESLVAEAQLSNITR.S	2

contaminant_KERATIN04

7.6%

458

49644

4.9

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_03_itms.10879.10879.2	3.4514	0.3442	100.0%	1301.1721	1302.4241	1	6.883	72.7%	1	R.ALEEANADLEVK.I	2 2 2 2
PARC_hx4_04_itms.12885.12885.2	2.9352	0.3256	100.0%	1357.8922	1358.4972	1	6.098	77.3%	2	L.RQSVEADINGLR.R	2 2
PARC_hx4_02_itms.12008.12008.2	3.1018	0.241	100.0%	1201.7722	1202.3097	1	5.725	95.0%	2	R.QSVEADINGLR.R	2 2
PARC_hx4_04_itms.14835.14835.2	3.3483	0.1427	100.0%	1380.5122	1380.5437	1	5.613	85.0%	3	K.TRLEQEIATYR.S	2 2 2 2 2
PARC_hx4_02_itms.10815.10815.1	2.1175	0.0706	98.7%	1122.39	1123.2511	1	4.167	75.0%	1	R.LEQEIATYR.S	1 1 1 1 1 1
PARC_hx4_02_itms.10808.10808.2	3.2886	0.1594	100.0%	1123.9122	1123.2511	1	5.616	93.8%	1	R.LEQEIATYR.S	2 2 2 2 2 2

YLR340W

7.4%

312

33717

4.8

RPP0 SGDID:S000004332, Chr XII from 805887-806825, Verified ORF, "Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphorylated on serine 302"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.19422.19422.1	2.4368	0.2843	100.0%	1267.51	1268.4088	1	4.892	70.0%	1	R.GFLSDLPDFEK.L	1
*	PARC_hx4_04_itms.19436.19436.2	3.4645	0.2081	100.0%	1268.3121	1268.4088	2	5.231	75.0%	1	R.GFLSDLPDFEK.L	2
*	PARC_hx4_04_itms.16190.16190.2	3.7797	0.3905	100.0%	1284.4321	1284.4575	1	6.676	77.3%	3	R.AGAVAPEDIWVR.A	2

contaminant_KERATIN15

7.3%

629

64511

6.5

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_03_itms.12789.12789.1	2.4806	0.1057	95.5%	827.37	827.95544	4	3.685	75.0%	1	K.FASFIDK.V	1 1 1 1 1 1
	PARC_hx4_04_itms.13564.13564.2	4.682	0.2398	100.0%	1477.1721	1477.7007	1	6.536	86.4%	8	R.FLEQQNKVLETK.W	2 2
*	PARC_hx4_04_itms.20652.20652.1	3.0356	0.2519	100.0%	1304.56	1303.4521	2	5.438	58.3%	8	R.SLDLDSIIAEVGA.Q	1
*	PARC_hx4_04_itms.20760.20760.2	5.2761	0.3543	100.0%	1306.3522	1303.4521	1	6.629	79.2%	10	R.SLDLDSIIAEVGA.Q	2
*	PARC_hx4_04_itms.20907.20907.3	3.4469	0.3042	100.0%	1954.3444	1952.1223	3	5.613	33.8%	5	R.SLDLDSIIAEVGAQYEDI.A	3
	PARC_hx4_03_itms.12942.12942.1	3.0544	0.2551	100.0%	1139.53	1140.2965	3	5.306	75.0%	1	R.DYQELMNVK.L	1 1

U	YGR192C	2	2	7.2%	332	35747	7.0	TDH3 SGDID:S000003424, Chr VII from 883815-882817, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "
U	YJR009C	2	2	7.2%	332	35847	7.0	TDH2 SGDID:S000003769, Chr X from 454595-453597, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.16182.16182.2	2.9277	0.3775	100.0%	1753.5721	1753.8651	1	6.623	53.8%	1	K.LVSWYDNEYGYSTR.V	2
	PARC_hx4_04_itms.13380.13380.2	2.8473	0.1995	100.0%	1109.3722	1109.3109	1	5.006	88.9%	1	R.VVDLVEHVAK.A	2

YOR270C

7.1%

840

95529

5.5

VPH1 SGDID:S000005796, Chr XV from 830571-828049, reverse complement, Verified ORF, "Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.19617.19617.2	3.1832	0.3207	100.0%	1667.5521	1668.89	1	6.175	53.6%	1	R.DSAYTLGQLGLVQFR.D	2
*	PARC_hx4_04_itms.14757.14757.2	3.4824	0.0592	98.8%	1761.4321	1761.985	1	3.526	75.0%	2	R.LIQMEDATDQIEVQK.N	2
*	PARC_hx4_04_itms.15263.15263.2	4.4708	0.5579	100.0%	2068.172	2069.146	1	9.336	52.8%	1	K.IAESLDANLYDVDSSNEGR.S	2
*	PARC_hx4_04_itms.18785.18785.2	3.4902	0.3896	100.0%	1396.3121	1396.4991	1	7.354	80.0%	1	K.ELDSWFQDVTR.E	2

YBR080C

6.6%

758

84056

8.0

SEC18 SGDID:S000000284, Chr II from 400884-398608, reverse complement, Verified ORF, "ATPase required for the release of Sec17p during the 'priming' step in homotypic vacuole fusion and for ER to Golgi transport; homolog of the mammalian NSF"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18028.18028.2	5.081	0.4409	100.0%	2344.0122	2343.5933	1	8.226	50.0%	1	R.NVQAIDLGDIEPTSAVATGIETK.G	2
*	PARC_hx4_04_itms.12902.12902.2	2.7745	0.2349	100.0%	1147.4321	1147.3195	1	5.072	77.8%	1	R.SNAVIRPDFK.F	2
*	PARC_hx4_04_itms.17520.17520.2	3.0879	0.2486	100.0%	1659.0322	1657.821	1	5.137	56.2%	1	R.GDGTGVGDNVVNQLLAK.M	2

U	YDR471W	2	2	6.6%	136	15505	10.4	RPL27B SGDID:S000002879, Chr IV from 1401760-1401790,1402175-1402554, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similarity to rat L27 ribosomal protein"
U	YHR010W	2	2	6.6%	136	15531	10.4	RPL27A SGDID:S000001052, Chr VIII from 126515-126545,127107-127486, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similarity to rat L27 ribosomal protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.16406.16406.1	2.1231	0.0904	98.6%	1085.35	1086.2297	1	3.944	68.8%	1	R.YTLDVEAFK.S	1
	PARC_hx4_04_itms.16392.16392.2	2.1952	0.1547	98.6%	1086.0521	1086.2297	1	4.161	81.2%	1	R.YTLDVEAFK.S	2

YAL038W

6.4%

500

54545

7.7

CDC19 SGDID:S000000036, Chr I from 71787-73289, Verified ORF, "Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.14689.14689.2	2.6269	0.1548	98.8%	1761.7322	1761.9292	1	3.729	50.0%	1	K.IENQQGVNNFDEILK.V	2
*	PARC_hx4_04_itms.19233.19233.2	3.5189	0.2172	100.0%	1750.8722	1750.0453	1	5.356	50.0%	1	R.GDLGIEIPAPEVLAVQK.K	2

YLL029W

6.3%

749

84924

6.9

YLL029W SGDID:S000003952, Chr XII from 81460-83709, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18004.18004.2	3.5503	0.3158	100.0%	1861.2722	1861.9745	1	5.941	57.7%	1	R.QNEDPITWQEWCVR.E	2
*	PARC_hx4_04_itms.19053.19053.2	3.0287	0.3327	100.0%	1704.3121	1704.79	1	6.056	57.7%	1	F.TNNPFNDDISEYFK.I	2
*	PARC_hx4_04_itms.17928.17928.2	2.5115	0.3028	100.0%	2175.7322	2177.3386	1	5.654	38.9%	1	K.IYLCDSGSQFLEGTTDITR.T	2

U	YBR118W	3	3	5.7%	458	50033	9.0	TEF2 SGDID:S000000322, Chr II from 477665-479041, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"
U	YPR080W	3	3	5.7%	458	50033	9.0	TEF1 SGDID:S000006284, Chr XVI from 700592-701968, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_04_itms.15566.15566.1	2.2003	0.0284	98.7%	895.35	895.04584	40	3.49	75.0%	1	K.YAWVLDK.L	1
PARC_hx4_03_itms.12776.12776.2	2.687	0.201	100.0%	976.6722	976.1607	2	4.651	92.9%	1	R.LPLQDVYK.I	2
PARC_hx4_04_itms.13533.13533.2	3.4501	0.3164	100.0%	1027.3121	1026.2241	1	5.951	90.0%	1	K.IGGIGTVPVGR.V	2

YDR452W

5.5%

674

78344

6.9

PPN1 SGDID:S000002860, Chr IV from 1362868-1364892, Verified ORF, "Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.17580.17580.2	4.522	0.3452	100.0%	1710.2522	1709.9116	1	7.335	75.0%	1	R.TEAQIFDMNNIVADK.M	2
*	PARC_hx4_04_itms.17631.17631.2	3.1621	0.3705	100.0%	1249.3121	1249.4497	4	6.408	72.7%	1	R.SASFLTEVIPGK.L	2
*	PARC_hx4_04_itms.16925.16925.2	2.8957	0.1704	99.8%	1260.1721	1260.432	1	4.474	83.3%	1	R.FVQFYADLEK.I	2

contaminant_KERATIN16

5.2%

534

57265

6.6

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_03_itms.12789.12789.1	2.4806	0.1057	95.5%	827.37	827.95544	4	3.685	75.0%	1	K.FASFIDK.V	1 1 1 1 1 1
PARC_hx4_04_itms.13564.13564.2	4.682	0.2398	100.0%	1477.1721	1477.7007	1	6.536	86.4%	8	Q.FLEQQNKVLETK.W	2 2
PARC_hx4_02_itms.09400.09400.2	3.1018	0.1596	100.0%	1107.9122	1108.196	1	6.027	93.8%	4	R.AQYEEIAQR.S	2 2 2 2

YML123C

4.9%

587

64382

6.4

PHO84 SGDID:S000004592, Chr XIII from 25801-24038, reverse complement, Verified ORF, "High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18837.18837.2	4.8325	0.4409	100.0%	1935.5122	1936.1284	1	7.977	68.8%	1	R.LALESIDDEGFGWQQVK.T	2
*	PARC_hx4_04_itms.08966.08966.2	1.7088	0.1902	96.2%	1086.3121	1087.1777	1	4.346	54.5%	1	R.STAHGISAASGK.V	2

YNL268W

4.4%

611

68090

7.0

LYP1 SGDID:S000005212, Chr XIV from 138551-140386, Verified ORF, "Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of cationic amino acids"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx4_04_itms.15213.15213.2	2.5413	0.3405	100.0%	1402.1921	1399.5461	1	5.75	65.4%	1	R.NPGAWGPGIISSDK.S	2
*	PARC_hx4_03_itms.15510.15510.2	3.9244	0.2531	100.0%	1587.1122	1587.7234	1	5.744	83.3%	2	R.EIEAIIWEDDEPK.N	2

YLR148W

4.2%

918

107398

7.0

PEP3 SGDID:S000004138, Chr XII from 434642-437398, Verified ORF, "Vacuolar peripheral membrane protein that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis, forms complex with Pep5p that mediates protein transport to the vacuole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18722.18722.2	2.8494	0.1113	98.8%	1706.5721	1706.8926	5	3.865	57.7%	1	K.FPLVLPDESEQFER.L	2
*	PARC_hx4_04_itms.16156.16156.2	3.3211	0.2363	100.0%	1440.5922	1441.6392	1	5.932	68.2%	1	K.LDNETVYQIMSK.Q	2
*	PARC_hx4_04_itms.17139.17139.2	3.9406	0.2745	100.0%	1474.0922	1474.6946	1	6.225	70.8%	1	R.TILNDSNEILTIK.D	2

YMR246W

4.0%

694

77267

6.6

FAA4 SGDID:S000004860, Chr XIII from 759806-761890, Verified ORF, "Long chain fatty acyl-CoA synthetase, regulates protein modification during growth in the presence of ethanol, functions to incorporate palmitic acid into phospholipids and neutral lipids"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18587.18587.2	2.8168	0.2625	100.0%	1368.2122	1369.5573	1	5.119	72.7%	1	K.LVDVEDLGYFAK.N	2
*	PARC_hx4_04_itms.18861.18861.2	2.7484	0.1158	98.5%	1827.7922	1827.9042	1	4.724	50.0%	1	K.NPEETAAAFTDDGWFR.T	2

YLR342W

3.9%

1876

214849

7.2

FKS1 SGDID:S000004334, Chr XII from 809997-815627, Verified ORF, "Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.18557.18557.2	3.9027	0.3375	100.0%	2089.2922	2090.3154	1	8.041	44.4%	1	R.VENPEIVQMFGGNAEGLER.E	2
*	PARC_hx4_04_itms.19359.19359.2	4.995	0.4293	100.0%	2645.612	2646.867	1	8.246	52.3%	2	R.AYPDLQIAYLDEEPPLTEGEEPR.I	2
	PARC_hx4_04_itms.17693.17693.2	4.7932	0.3966	100.0%	1856.8922	1857.027	1	8.894	70.6%	1	R.EYIFSENSGVLGDVAAGK.E	2
*	PARC_hx4_04_itms.16860.16860.2	2.9321	0.2299	100.0%	1617.6122	1617.7985	1	5.506	58.3%	1	R.EYYYLGTQLPVDR.F	2

YDR089W

3.3%

869

98712

5.5

YDR089W SGDID:S000002496, Chr IV from 622107-624716, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.17849.17849.2	3.0877	0.155	99.8%	1351.0721	1351.5396	1	4.008	72.7%	1	R.FLLSSEDIEGLK.F	2
*	PARC_hx4_04_itms.19576.19576.2	4.5192	0.3808	100.0%	1912.7722	1913.0477	1	6.574	68.8%	1	K.LNSDDSLSPDEFFQLGK.D	2

YOR291W

3.2%

1472

166749

6.1

YOR291W SGDID:S000005817, Chr XV from 861172-865590, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.17176.17176.2	3.7182	0.0656	100.0%	1050.0322	1050.1998	1	5.527	93.8%	1	K.FGELLSDIR.Q	2
*	PARC_hx4_04_itms.18784.18784.2	3.6865	0.3781	100.0%	1490.2522	1490.6531	1	6.691	69.2%	2	R.SVDGNLLGDPLDFK.M	2
*	PARC_hx4_04_itms.16425.16425.2	3.5928	0.3327	100.0%	1490.2922	1490.5688	1	6.272	72.7%	1	K.TNNDDVYWSFTK.G	2
*	PARC_hx4_04_itms.18390.18390.2	2.7153	0.3056	100.0%	1376.5721	1377.537	1	6.794	72.7%	1	K.STLPADFEEVLR.C	2

YDL077C

3.1%

1049

122881

7.1

VAM6 SGDID:S000002235, Chr IV from 320120-316971, reverse complement, Verified ORF, "Vacuolar protein that plays a critical role in the tethering steps of vacuolar membrane fusion by facilitating guanine nucleotide exchange on small guanosine triphosphatase Ypt7p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.15340.15340.2	2.8156	0.2937	100.0%	1618.7122	1618.7814	12	5.43	50.0%	1	K.SSDITAILPTEQSQK.L	2
*	PARC_hx4_04_itms.20404.20404.2	5.4018	0.4155	100.0%	2010.7722	2010.1187	1	7.437	68.8%	1	K.FLTDLVDELENDNTDQK.Q	2

YDR135C

3.0%

1515

171120

8.4

YCF1 SGDID:S000002542, Chr IV from 727546-722999, reverse complement, Verified ORF, "Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_04_itms.16640.16640.2	3.0966	0.3426	100.0%	1686.0521	1686.8566	1	5.942	57.1%	1	R.ESSIPVEGELEQLQK.L	2
*	PARC_hx4_04_itms.18381.18381.2	5.3775	0.4545	100.0%	1977.4922	1978.1252	1	9.196	83.3%	1	R.ENIDPINQYTDEAIWR.A	2
*	PARC_hx4_03_itms.14356.14356.2	4.2812	0.3822	100.0%	1620.4321	1620.7563	1	7.01	71.4%	3	K.VAEFDSPGQLLSDNK.S	2

YPL019C

2.9%

835

96553

7.4

VTC3 SGDID:S000005940, Chr XVI from 517016-514509, reverse complement, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.16702.16702.2	3.7472	0.168	100.0%	1611.7322	1611.7484	1	4.98	79.2%	1	R.DFDNIQNFIVEEK.L	2
*	PARC_hx4_04_itms.14186.14186.2	2.0304	0.1505	97.0%	1202.5521	1203.3378	493	3.91	50.0%	1	K.ISVPDGKTTER.Q	2

YNR013C

2.7%

894

99490

8.0

PHO91 SGDID:S000005296, Chr XIV from 651714-649030, reverse complement, Verified ORF, "Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx4_03_itms.14893.14893.2	3.7747	0.3417	100.0%	1401.3722	1399.5431	1	6.659	81.8%	1	K.DFIELNQTGFSK.I	2
*	PARC_hx4_04_itms.12935.12935.2	3.0268	0.2972	100.0%	1406.0721	1406.4978	4	5.707	63.6%	1	R.RPSNTFNLDADR.I	2

U	YBR012W-B	3	4	2.5%	1756	198868	8.5	YBR012W-B SGDID:S000002155, Chr II from 259867-261171,261173-265138, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YER160C	3	4	2.5%	1755	198568	8.5	YER160C SGDID:S000000962, Chr V from 498119-496818,496816-492851, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YER138C	3	4	2.5%	1755	198561	8.1	YER138C SGDID:S000000940, Chr V from 449020-447719,447717-443752, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR365W-B	3	4	2.5%	1755	198658	8.0	YDR365W-B SGDID:S000007401, Chr IV from 1206987-1208291,1208293-1212255, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR316W-B	3	4	2.5%	1755	198526	8.2	YDR316W-B SGDID:S000007399, Chr IV from 1096059-1097363,1097365-1101327, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR261C-D	3	4	2.7%	1604	181660	7.5	YDR261C-D SGDID:S000007395, Chr IV from 992343-991039,991037-987528, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR210C-D	3	4	2.5%	1755	198838	8.4	YDR210C-D SGDID:S000007410, Chr IV from 883922-882618,882616-878654, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"
U	YDR098C-B	3	4	2.5%	1755	198594	8.4	YDR098C-B SGDID:S000007391, Chr IV from 651121-649817,649815-645853, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx4_02_itms.10908.10908.2	3.8358	0.3748	100.0%	1641.8522	1640.7472	2	6.953	60.7%	2	K.EVHTNQDPLDVSASK.I	2
PARC_hx4_04_itms.18860.18860.2	3.6815	0.2365	100.0%	1415.9321	1413.6257	1	5.123	77.3%	1	K.DILSVDYTDIMK.I	2
PARC_hx4_04_itms.19106.19106.2	2.2025	0.1214	96.6%	2089.4521	2090.2102	20	4.197	37.5%	1	R.LDQFNYDALTFDEDLNR.L	2

	Proteins	Peptide IDs	Spectra
Unfiltered	10391	47557	51353
Filtered	70	373	717
Forward matches	70	373	717
Decoy matches	0	0	0
Forward FP rate	0.0%	0.0%	0.0%

/data/6/jamest/xu/aug07/hx4/parc