D parc

DTASelect v2.0.16
/data/6/jamest/xu/aug07/hx3/parc
/scratch/yates/SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta
SEQUEST 3.0 in SQT format.
--trypstat
Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
0.0	Minimum peptide confidence
0.05	Peptide false positive rate
0.0	Minimum protein confidence
1.0	Protein false positive rate
1	Minimum charge state
16	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
false	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
true	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
1000	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

contaminant_KERATIN03

127

56.5%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.10223.10223.2	4.0486	0.3791	100.0%	1551.0521	1550.551	1	6.566	52.6%	1	R.SGGGGGGGGCGGGGGVSSLR.I	2
*	PARC_hx3_04_itms.16922.16922.3	3.4097	0.3162	100.0%	2652.6543	2654.8557	1	4.969	24.1%	1	V.SSLRISSSKGSLGGGFSSGGFSGGSFSR.G	3
*	PARC_hx3_04_itms.16920.16920.2	5.5668	0.5187	100.0%	1711.1921	1708.7844	1	9.627	63.9%	5	K.GSLGGGFSSGGFSGGSFSR.G	2
*	PARC_hx3_04_itms.15498.15498.2	3.4785	0.3297	100.0%	1451.2722	1451.4949	1	8.091	56.7%	1	L.GGGFSSGGFSGGSFSR.G	2
*	PARC_hx3_03_itms.11410.11410.2	3.3458	0.2178	97.7%	1133.2122	1133.1625	1	4.907	86.4%	1	F.SSGGFSGGSFSR.G	2
*	PARC_hx3_03_itms.15891.15891.2	3.7549	0.4244	100.0%	2116.412	2116.2107	1	6.712	35.4%	2	F.GGGGFGGGFGGGFGGDGGLLSGNEK.V	2
	PARC_hx3_02_itms.11624.11624.2	2.8329	0.2513	100.0%	1091.0322	1091.2273	2	5.405	87.5%	1	K.VTMQNLNDR.L	2 2 2
	PARC_hx3_02_itms.11920.11920.2	2.2138	0.1811	98.7%	809.6922	809.93774	5	4.194	83.3%	1	R.LASYLDK.V	2 2 2 2 2 2
	PARC_hx3_02_itms.11912.11912.1	2.2716	0.0967	98.1%	810.55	809.93774	51	4.288	75.0%	2	R.LASYLDK.V	1 1 1 1 1 1
*	PARC_hx3_02_itms.12392.12392.2	4.6309	0.3793	100.0%	1382.5122	1382.4668	1	7.767	81.8%	4	R.ALEESNYELEGK.I	2
*	PARC_hx3_02_itms.12376.12376.1	3.2551	0.225	100.0%	1382.58	1382.4668	1	5.127	63.6%	3	R.ALEESNYELEGK.I	1
*	PARC_hx3_03_itms.17983.17983.3	6.2954	0.3222	100.0%	2368.1042	2368.6523	1	6.87	47.5%	8	K.NQILNLTTDNANILLQIDNAR.L	3
*	PARC_hx3_03_itms.18147.18147.2	5.9348	0.2799	100.0%	2368.4321	2368.6523	1	7.415	62.5%	15	K.NQILNLTTDNANILLQIDNAR.L	2
*	PARC_hx3_02_itms.15875.15875.2	4.2873	0.3608	100.0%	1672.2522	1672.8357	3	6.746	60.7%	2	L.TTDNANILLQIDNAR.L	2
*	PARC_hx3_04_itms.18030.18030.2	3.6176	0.3272	100.0%	1573.6122	1571.7306	1	6.06	69.2%	1	T.TDNANILLQIDNAR.L	2
	PARC_hx3_02_itms.12040.12040.2	2.5325	0.1886	99.5%	807.65216	807.8815	1	4.578	91.7%	1	R.LAADDFR.L	2 2 2 2 2
*	PARC_hx3_02_itms.11630.11630.1	2.2169	0.2132	100.0%	993.32	994.0923	1	5.344	78.6%	1	K.YENEVALR.Q	1
*	PARC_hx3_02_itms.11632.11632.2	2.9602	0.2946	100.0%	994.4322	994.0923	1	6.142	92.9%	1	K.YENEVALR.Q	2
	PARC_hx3_04_itms.14098.14098.2	2.8218	0.2574	95.8%	1357.0521	1358.4972	1	5.275	68.2%	1	L.RQSVEADINGLR.R	2 2
	PARC_hx3_02_itms.13180.13180.1	1.4056	0.224	98.3%	1201.61	1202.3097	26	4.205	55.0%	1	R.QSVEADINGLR.R	1 1
	PARC_hx3_02_itms.13168.13168.2	2.9528	0.301	100.0%	1202.1721	1202.3097	1	5.498	80.0%	1	R.QSVEADINGLR.R	2 2
*	PARC_hx3_02_itms.14319.14319.2	3.5088	0.2721	100.0%	1032.1322	1032.2224	3	5.284	87.5%	2	R.VLDELTLTK.A	2
*	PARC_hx3_03_itms.00645.00645.2	5.1548	0.5373	100.0%	2096.4922	2097.3853	1	9.976	73.5%	1	K.ADLEMQIESLTEELAYLK.K	2
*	PARC_hx3_02_itms.20026.20026.2	5.9032	0.4689	100.0%	2874.672	2874.2134	1	8.07	44.2%	1	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	2
*	PARC_hx3_04_itms.21705.21705.2	4.2287	0.3779	100.0%	1613.5122	1613.8724	1	7.012	71.4%	1	N.AAPGVDLTQLLNNMR.S	2
*	PARC_hx3_02_itms.11538.11538.1	2.565	0.2691	100.0%	1365.56	1366.43	1	5.626	60.0%	2	R.SQYEQLAEQNR.K	1
*	PARC_hx3_02_itms.11540.11540.2	4.4579	0.3404	100.0%	1365.6721	1366.43	1	6.852	85.0%	2	R.SQYEQLAEQNR.K	2
*	PARC_hx3_03_itms.10705.10705.2	3.2428	0.2926	100.0%	1493.9922	1494.6041	3	5.11	59.1%	2	R.SQYEQLAEQNRK.D	2
*	PARC_hx3_02_itms.14123.14123.1	2.5209	0.1192	98.0%	1109.43	1110.1681	1	5.284	75.0%	2	K.DAEAWFNEK.S	1
*	PARC_hx3_02_itms.14116.14116.2	3.1436	0.2435	100.0%	1110.2922	1110.1681	1	6.018	81.2%	2	K.DAEAWFNEK.S	2
*	PARC_hx3_02_itms.16634.16634.2	5.4871	0.4034	100.0%	1997.5322	1998.151	1	8.587	75.0%	19	K.ELTTEIDNNIEQISSYK.S	2
*	PARC_hx3_02_itms.11706.11706.1	1.76	0.1594	98.2%	849.55	847.94385	5	3.463	66.7%	1	K.SEITELR.R	1
*	PARC_hx3_02_itms.19054.19054.2	3.2078	0.0763	97.8%	1799.8322	1798.0898	2	3.939	50.0%	2	R.NVQALEIELQSQLALK.Q	2
*	PARC_hx3_02_itms.13407.13407.2	3.917	0.4881	100.0%	1390.6921	1391.4778	1	7.941	83.3%	3	K.QSLEASLAETEGR.Y	2
*	PARC_hx3_02_itms.13416.13416.1	1.6497	0.2355	97.8%	1390.77	1391.4778	38	5.313	41.7%	1	K.QSLEASLAETEGR.Y	1
*	PARC_hx3_02_itms.13936.13936.2	3.746	0.2368	100.0%	1338.0721	1338.4694	2	5.165	75.0%	1	R.YCVQLSQIQAQ.I	2
*	PARC_hx3_04_itms.26355.26355.3	5.3149	0.4911	100.0%	2747.1843	2748.0747	1	7.481	38.6%	6	R.YCVQLSQIQAQISALEEQLQQIR.A	3
*	PARC_hx3_04_itms.22646.22646.2	3.5156	0.2613	98.3%	2084.4521	2084.3372	1	6.09	52.9%	1	L.SQIQAQISALEEQLQQIR.A	2
*	PARC_hx3_04_itms.21462.21462.2	5.1298	0.3796	100.0%	1996.4521	1997.259	1	8.193	62.5%	1	S.QIQAQISALEEQLQQIR.A	2
*	PARC_hx3_02_itms.15452.15452.2	4.6809	0.2691	100.0%	1428.2922	1428.6285	1	5.431	81.8%	5	Q.ISALEEQLQQIR.A	2
*	PARC_hx3_02_itms.15698.15698.2	6.0417	0.4374	100.0%	2083.0522	2084.2104	1	8.125	71.9%	8	R.AETECQNTEYQQLLDIK.I	2
*	PARC_hx3_02_itms.11892.11892.1	3.2541	0.2526	100.0%	1165.0	1166.2761	11	5.318	75.0%	2	R.LENEIQTYR.S	1
*	PARC_hx3_02_itms.11888.11888.2	3.4519	0.2477	100.0%	1166.2522	1166.2761	2	4.35	93.8%	5	R.LENEIQTYR.S	2
*	PARC_hx3_02_itms.11642.11642.1	2.336	0.1942	100.0%	1262.63	1263.3066	22	5.05	38.5%	2	R.SLLEGEGSSGGGGR.G	1
*	PARC_hx3_02_itms.11631.11631.2	3.6035	0.431	100.0%	1263.1122	1263.3066	1	7.541	80.8%	1	R.SLLEGEGSSGGGGR.G	2

Similarities: contaminant_KERATIN02(2:43)
contaminant_KERATIN12(3:42)
contaminant_KERATIN05(4:41)
contaminant_KERATIN08(4:41)
contaminant_KERATIN07(3:42)
contaminant_KERATIN04(3:42)

YBL050W

56.2%

292

32803

5.1

SEC17 SGDID:S000000146, Chr II from 125128-125157,125274-126122, Verified ORF, "Peripheral membrane protein required for vesicular transport between ER and Golgi and for the 'priming' step in homotypic vacuole fusion, part of the cis-SNARE complex; has similarity to alpha-SNAP"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.12086.12086.1	2.3895	0.2238	100.0%	1003.48	1004.08435	1	4.795	68.8%	1	K.LFSGSDSYK.F	1
*	PARC_hx3_02_itms.15809.15809.2	3.3585	0.3876	100.0%	1860.3322	1858.024	1	5.833	63.3%	2	K.FEEAADLCVQAATIYR.L	2
*	PARC_hx3_02_itms.15998.15998.1	3.0055	0.2209	100.0%	1206.62	1207.369	1	4.847	70.0%	1	K.ELNLAGDSFLK.A	1
*	PARC_hx3_02_itms.16005.16005.2	2.8341	0.1552	99.2%	1209.2722	1207.369	1	4.005	80.0%	1	K.ELNLAGDSFLK.A	2
*	PARC_hx3_02_itms.11909.11909.2	5.0211	0.4056	100.0%	1859.9722	1859.9438	1	8.117	71.9%	1	K.KAGNEDEAGNTYVEAYK.C	2
*	PARC_hx3_02_itms.12124.12124.2	4.7059	0.4797	100.0%	1731.5922	1731.7698	1	7.778	70.0%	2	K.AGNEDEAGNTYVEAYK.C	2
*	PARC_hx3_02_itms.20541.20541.2	5.0733	0.4879	100.0%	1935.1721	1936.0856	1	9.458	66.7%	2	K.SGGNSVNAVDSLENAIQIF.T	2
*	PARC_hx3_04_itms.20673.20673.2	3.201	0.1979	99.5%	1909.6322	1907.0869	1	5.022	50.0%	2	K.FELGEILENDLHDYAK.A	2
*	PARC_hx3_02_itms.14507.14507.1	3.9926	0.4275	100.0%	1672.67	1673.8169	1	8.64	60.7%	1	K.ALDGQYIEASDIYSK.L	1
*	PARC_hx3_03_itms.13793.13793.2	5.1771	0.4485	100.0%	1672.8121	1673.8169	1	7.992	78.6%	5	K.ALDGQYIEASDIYSK.L	2
*	PARC_hx3_02_itms.14292.14292.2	5.1915	0.3701	100.0%	1487.9922	1488.65	1	9.001	82.1%	2	K.GLCQLAATDAVAAAR.T	2
*	PARC_hx3_02_itms.11921.11921.2	5.2414	0.5	100.0%	1794.5322	1794.829	1	9.528	73.3%	3	R.TLQEGQSEDPNFADSR.E	2
*	PARC_hx3_02_itms.14428.14428.2	3.7647	0.2813	100.0%	1842.6522	1843.8987	1	5.505	59.4%	1	K.SLIDAVNEGDSEQLSEH.C	2
*	PARC_hx3_04_itms.16064.16064.2	5.0805	0.5388	100.0%	2131.132	2132.2117	1	9.899	66.7%	1	K.SLIDAVNEGDSEQLSEHCK.E	2
*	PARC_hx3_02_itms.14631.14631.2	4.2255	0.1569	100.0%	1318.2322	1318.38	4	4.947	80.0%	1	K.ESIQQQEDDLL.-	2

YLR093C

52.2%

253

28964

5.7

NYV1 SGDID:S000004083, Chr XII from 327416-327401,327259-326514, reverse complement, Verified ORF, "v-SNARE component of the vacuolar SNARE complex involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.14988.14988.1	2.4156	0.0856	98.4%	1197.51	1198.4044	3	3.934	61.1%	1	R.FNVSYVEVIK.N	1
*	PARC_hx3_03_itms.14970.14970.2	3.1536	0.2928	100.0%	1197.9922	1198.4044	1	5.391	88.9%	3	R.FNVSYVEVIK.N	2
*	PARC_hx3_02_itms.15190.15190.2	3.2036	0.127	98.7%	1645.2122	1643.7595	1	3.998	61.5%	2	K.NGETISSCFQPFQK.N	2
*	PARC_hx3_02_itms.18099.18099.2	3.5097	0.3059	100.0%	2114.412	2112.3008	1	6.123	55.6%	1	K.NENYGTITSANEQITPVIF.H	2
*	PARC_hx3_04_itms.18316.18316.2	3.9288	0.3057	100.0%	2044.7922	2046.12	1	7.383	56.2%	1	N.LIDGFDCFYSTDDHDPK.T	2
*	PARC_hx3_02_itms.17310.17310.2	4.6895	0.2812	100.0%	2207.2122	2206.3708	1	6.794	63.2%	1	R.ILSGLQEYESNATNELLSSH.V	2
*	PARC_hx3_02_itms.14231.14231.3	3.938	0.2697	100.0%	3367.9443	3366.407	1	5.588	25.8%	1	R.NQTLNSSGNGQSSNGNGQNTISDIGDATEDQIK.D	3
*	PARC_hx3_02_itms.15530.15530.2	4.283	0.3151	100.0%	1418.3722	1418.605	1	6.093	86.4%	1	K.DVIQIMNDNIDK.F	2
*	PARC_hx3_02_itms.13000.13000.1	2.2638	0.0958	98.2%	773.54	773.9481	3	3.963	75.0%	1	R.VSLLVDK.T	1

contaminant_KERATIN02

49.0%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.10590.10590.2	4.2234	0.4486	100.0%	1232.9722	1233.2833	1	8.6	76.7%	2	T.SGGGGGGGLGSGGSIR.S	2
*	PARC_hx3_03_itms.09559.09559.2	3.0749	0.405	100.0%	1235.5521	1236.2401	1	6.785	79.2%	1	R.FSSSSGYGGGSSR.V	2
*	PARC_hx3_04_itms.16602.16602.3	4.6513	0.3788	100.0%	2024.0944	2024.0703	1	6.691	40.2%	1	Y.SYGGGSGGGFSASSLGGGFGGGSR.G	3
*	PARC_hx3_04_itms.16646.16646.2	5.6581	0.6195	100.0%	2024.3121	2024.0703	1	10.957	47.8%	4	Y.SYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_hx3_04_itms.16071.16071.2	3.2512	0.3856	100.0%	1773.1721	1773.816	7	6.388	35.7%	1	Y.GGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_hx3_04_itms.16221.16221.2	3.9372	0.4784	100.0%	1602.7722	1602.6604	1	7.544	61.1%	1	G.SGGGFSASSLGGGFGGGSR.G	2
*	PARC_hx3_03_itms.11466.11466.2	3.4336	0.4192	100.0%	1197.3722	1197.2499	1	7.183	80.8%	1	F.SASSLGGGFGGGSR.G	2
*	PARC_hx3_04_itms.13326.13326.2	2.9031	0.4479	100.0%	952.03217	952.01465	1	6.929	90.0%	1	S.SLGGGFGGGSR.G	2
*	PARC_hx3_02_itms.11049.11049.2	2.6467	0.2669	100.0%	1065.6322	1066.1742	5	6.366	87.5%	1	K.STMQELNSR.L	2
	PARC_hx3_02_itms.11920.11920.2	2.2138	0.1811	98.7%	809.6922	809.93774	5	4.194	83.3%	1	R.LASYLDK.V	2 2 2 2 2 2
	PARC_hx3_02_itms.11912.11912.1	2.2716	0.0967	98.1%	810.55	809.93774	51	4.288	75.0%	2	R.LASYLDK.V	1 1 1 1 1 1
*	PARC_hx3_02_itms.12423.12423.1	2.962	0.2457	100.0%	1586.58	1587.6836	1	6.32	53.8%	1	K.VQALEEANNDLENK.I	1
*	PARC_hx3_02_itms.12407.12407.2	5.2245	0.444	100.0%	1587.5721	1587.6836	1	7.959	88.5%	1	K.VQALEEANNDLENK.I	2
*	PARC_hx3_02_itms.14832.14832.2	3.5055	0.3106	100.0%	1606.0521	1606.7289	1	5.775	79.2%	2	K.NYSPYYNTIDDLK.D	2
*	PARC_hx3_02_itms.14861.14861.1	2.9295	0.1912	100.0%	1606.62	1606.7289	1	4.633	58.3%	1	K.NYSPYYNTIDDLK.D	1
*	PARC_hx3_02_itms.13652.13652.1	2.8962	0.3501	100.0%	1315.47	1316.4539	1	5.743	63.6%	1	K.DQIVDLTVGNNK.T	1
*	PARC_hx3_02_itms.13642.13642.2	4.689	0.353	100.0%	1316.4321	1316.4539	1	6.65	86.4%	2	K.DQIVDLTVGNNK.T	2
*	PARC_hx3_02_itms.13946.13946.1	2.3175	0.1737	97.6%	1060.64	1061.1802	16	5.251	62.5%	1	K.TLLDIDNTR.M	1
*	PARC_hx3_02_itms.13928.13928.2	2.745	0.1269	98.7%	1062.3121	1061.1802	1	3.854	93.8%	1	K.TLLDIDNTR.M	2
*	PARC_hx3_02_itms.14250.14250.2	2.0349	0.1565	97.9%	898.03217	898.02155	3	4.545	91.7%	1	R.MTLDDFR.I	2
*	PARC_hx3_02_itms.12671.12671.1	1.795	0.1012	97.1%	1067.52	1067.2048	90	2.992	57.1%	1	K.FEMEQNLR.Q	1
*	PARC_hx3_02_itms.12688.12688.2	2.8357	0.2773	100.0%	1159.1522	1158.2566	1	5.514	85.0%	2	R.QGVDADINGLR.Q	2
*	PARC_hx3_02_itms.13692.13692.2	2.4391	0.1842	98.7%	1191.0122	1191.385	4	3.853	77.8%	1	R.QVLDNLTMEK.S	2
*	PARC_hx3_04_itms.23076.23076.2	5.6815	0.4263	100.0%	2171.8323	2172.4702	1	8.843	70.6%	1	K.SDLEMQYETLQEELMALK.K	2
*	PARC_hx3_02_itms.12657.12657.2	2.1913	0.1087	96.6%	1122.2122	1122.2633	2	4.465	75.0%	1	R.QEYEQLIAK.N	2
*	PARC_hx3_04_itms.20806.20806.3	5.5025	0.4205	100.0%	3265.6743	3266.413	1	7.262	35.7%	5	K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E	3
*	PARC_hx3_02_itms.16385.16385.2	5.1019	0.4753	100.0%	1858.6122	1858.0587	1	7.918	76.7%	1	M.IQEQISNLEAQITDVR.Q	2
*	PARC_hx3_02_itms.15413.15413.2	4.5661	0.3373	100.0%	1655.7722	1654.7369	1	7.58	83.3%	1	R.QEIECQNQEYSLL.L	2
*	PARC_hx3_02_itms.17300.17300.2	5.8136	0.4172	100.0%	2095.4722	2096.308	1	8.333	75.0%	10	R.QEIECQNQEYSLLLSIK.M	2
*	PARC_hx3_04_itms.17548.17548.3	6.1487	0.3729	100.0%	2511.4443	2511.6177	1	7.035	42.0%	3	K.EIETYHNLLEGGQEDFESSGAGK.I	3
*	PARC_hx3_04_itms.17583.17583.2	4.876	0.3703	100.0%	2511.7122	2511.6177	1	7.288	52.3%	1	K.EIETYHNLLEGGQEDFESSGAGK.I	2
*	PARC_hx3_04_itms.15422.15422.2	5.3611	0.4185	100.0%	1875.2722	1875.9463	1	8.606	82.4%	1	Y.HNLLEGGQEDFESSGAGK.I	2
*	PARC_hx3_03_itms.10881.10881.3	8.3508	0.585	100.0%	3224.5144	3225.1118	1	10.612	28.2%	2	R.GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK.S	3

Similarities: contaminant_KERATIN03(2:31)
contaminant_KERATIN12(2:31)
contaminant_KERATIN05(2:31)
contaminant_KERATIN08(2:31)
contaminant_KERATIN07(2:31)

YGL212W

44.6%

316

36711

8.4

VAM7 SGDID:S000003180, Chr VII from 91436-92386, Verified ORF, "Component of the vacuole SNARE complex involved in vacuolar morphogenesis; SNAP-25 homolog; functions with a syntaxin homolog Vam3p in vacuolar protein trafficking"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.13214.13214.2	3.7462	0.3034	100.0%	1241.3722	1241.4294	1	6.746	90.0%	1	K.YVLYGVSTPNK.R	2
*	PARC_hx3_02_itms.15040.15040.2	3.6026	0.3722	100.0%	1468.0122	1468.603	1	6.998	79.2%	1	R.DVGSTIPYDFPEK.P	2
*	PARC_hx3_04_itms.18338.18338.2	4.3268	0.3356	100.0%	2106.2322	2106.3398	1	6.165	55.6%	3	R.DVGSTIPYDFPEKPGVLDR.R	2
*	PARC_hx3_02_itms.12186.12186.2	2.3753	0.2191	99.0%	1440.3522	1439.5396	6	4.302	70.0%	1	R.RYDDPEMIDER.R	2
*	PARC_hx3_02_itms.14393.14393.1	2.5719	0.1656	100.0%	1183.61	1184.2938	9	4.348	68.8%	1	R.FLNELYNDR.F	1
*	PARC_hx3_02_itms.14384.14384.2	3.4812	0.2299	100.0%	1185.3922	1184.2938	1	4.868	93.8%	3	R.FLNELYNDR.F	2
*	PARC_hx3_02_itms.15173.15173.2	3.5361	0.313	100.0%	1162.6322	1163.3593	2	6.391	83.3%	4	K.IAQDFLQLSK.P	2
*	PARC_hx3_02_itms.15185.15185.1	2.7321	0.0891	98.2%	1163.65	1163.3593	9	3.486	66.7%	1	K.IAQDFLQLSK.P	1
*	PARC_hx3_02_itms.11493.11493.2	2.1974	0.3037	99.6%	990.0122	990.10144	19	5.527	68.8%	1	K.SLPSTEVTR.R	2
*	PARC_hx3_02_itms.11854.11854.2	2.7176	0.3034	100.0%	1578.6522	1578.5989	1	5.557	69.2%	1	K.ECDDIGTANIAQDR.G	2
*	PARC_hx3_04_itms.14402.14402.2	5.6941	0.5638	100.0%	1835.3922	1835.9658	1	11.123	79.4%	4	R.LLGVATSDNSSTTEVQGR.T	2
*	PARC_hx3_02_itms.12404.12404.2	4.7437	0.4624	100.0%	1663.4922	1663.864	1	8.635	73.1%	1	R.TNNDLQQGQMQMVR.D	2
*	PARC_hx3_03_itms.12122.12122.2	4.3234	0.3216	100.0%	1337.8722	1338.463	1	7.025	85.0%	7	R.DQEQELVALHR.I	2
*	PARC_hx3_02_itms.16746.16746.2	3.6609	0.4748	100.0%	1660.8322	1661.7631	1	8.486	75.0%	1	N.ELLTALEDDVDNTGR.R	2

contaminant_KERATIN21

38.9%

357

39219

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_03_itms.18807.18807.2	4.5507	0.4077	100.0%	1890.9122	1892.1216	1	7.887	75.0%	11	-.QNLEPLFEQYINNLR.R	2 2 2
*	PARC_hx3_02_itms.16216.16216.2	3.6456	0.3509	100.0%	1182.0922	1182.3337	1	6.923	88.9%	1	R.GMQDLVEDFK.N	2
	PARC_hx3_02_itms.10350.10350.2	2.9258	0.1487	99.5%	1153.4122	1153.234	79	4.201	75.0%	3	K.NKYEDEINK.R	2 2 2
	PARC_hx3_02_itms.13608.13608.2	3.2896	0.2692	100.0%	1223.9321	1223.3684	2	5.985	75.0%	1	R.TAAENEFVTLK.K	2 2
	PARC_hx3_03_itms.16526.16526.2	3.5628	0.2608	100.0%	1408.4122	1408.551	1	5.175	77.3%	5	K.ADTLTDEINFLR.A	2 2
	PARC_hx3_02_itms.18788.18788.1	3.3328	0.274	100.0%	1329.66	1330.5211	1	5.554	72.7%	2	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx3_03_itms.17829.17829.2	4.8473	0.1856	100.0%	1332.6921	1330.5211	1	5.71	81.8%	7	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_hx3_02_itms.11271.11271.1	1.9795	0.195	97.7%	1107.64	1108.196	3	5.035	68.8%	1	K.AQYEEIAQR.S	1 1 1 1
	PARC_hx3_02_itms.11249.11249.2	3.1946	0.337	100.0%	1108.3121	1108.196	1	5.625	87.5%	2	K.AQYEEIAQR.S	2 2 2 2
	PARC_hx3_02_itms.14396.14396.2	3.322	0.3485	100.0%	1662.0922	1659.7625	1	5.997	71.4%	2	K.QCANLQAAIADAEQR.G	2 2
	PARC_hx3_02_itms.13982.13982.2	3.9036	0.3498	100.0%	1116.2522	1116.2566	1	5.915	88.9%	1	K.LEGLEDALQK.A	2 2
	PARC_hx3_02_itms.16499.16499.2	2.4911	0.2679	99.6%	1264.6122	1264.4644	1	5.244	80.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2
	PARC_hx3_02_itms.10497.10497.2	2.5921	0.1503	99.2%	1006.0522	1006.0667	2	4.792	92.9%	2	K.LLEGEECR.L	2 2 2 2 2
*	PARC_hx3_03_itms.12260.12260.2	4.9362	0.4177	100.0%	1448.3322	1448.6163	1	8.47	71.9%	2	R.AIGGGLSSVGGGSSTIK.Y	2

contaminant_KERATIN12

37.6%

431

47974

5.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.10653.10653.2	3.4063	0.4417	100.0%	1034.8522	1035.1112	1	6.768	95.0%	1	R.LSGGLGAGSCR.L	2
*	PARC_hx3_02_itms.16628.16628.2	3.2212	0.3312	100.0%	2661.0522	2661.764	16	5.596	24.1%	1	Y.SSCYSFGSGGGYGSSFGGVDGLLAGGEK.A	2
*	PARC_hx3_02_itms.16176.16176.2	3.8438	0.468	100.0%	2164.2722	2164.2927	1	7.557	39.1%	1	Y.SFGSGGGYGSSFGGVDGLLAGGEK.A	2
	PARC_hx3_02_itms.11920.11920.2	2.2138	0.1811	98.7%	809.6922	809.93774	5	4.194	83.3%	1	R.LASYLDK.V	2 2 2 2 2 2
	PARC_hx3_02_itms.11912.11912.1	2.2716	0.0967	98.1%	810.55	809.93774	51	4.288	75.0%	2	R.LASYLDK.V	1 1 1 1 1 1
	PARC_hx3_02_itms.12040.12040.2	2.5325	0.1886	99.5%	807.65216	807.8815	1	4.578	91.7%	1	R.LAADDFR.T	2 2 2 2 2
	PARC_hx3_02_itms.11754.11754.2	2.3757	0.1766	98.9%	993.8522	994.0923	1	4.663	85.7%	1	K.FETEQALR.L	2
	PARC_hx3_02_itms.14591.14591.1	2.0106	0.0977	97.1%	1029.66	1030.2096	37	4.69	62.5%	1	R.VLDELTLAR.A	1 1 1 1
	PARC_hx3_02_itms.14588.14588.2	3.6549	0.2643	100.0%	1030.2122	1030.2096	1	5.792	93.8%	1	R.VLDELTLAR.A	2 2 2 2
*	PARC_hx3_02_itms.15407.15407.2	4.0173	0.2496	100.0%	1304.2322	1304.5011	3	4.91	80.0%	1	R.ADLEMQIENLK.E	2
*	PARC_hx3_02_itms.15558.15558.2	3.3776	0.4135	100.0%	2116.5122	2115.3228	1	7.095	47.5%	1	R.GQVGGEINVEMDAAPGVDLSR.I	2
	PARC_hx3_02_itms.11213.11213.2	4.1371	0.3674	100.0%	1362.4122	1362.4796	1	7.543	75.0%	1	R.EVATNSELVQSGK.S	2 2
*	PARC_hx3_02_itms.12183.12183.2	4.109	0.4591	100.0%	1404.3522	1404.4764	1	8.045	79.2%	1	K.ASLEGNLAETENR.Y	2
	PARC_hx3_02_itms.15365.15365.2	4.2594	0.2833	100.0%	1343.6721	1343.523	1	6.772	86.4%	1	L.IGSVEEQLAQLR.C	2 2 2
	PARC_hx3_02_itms.12060.12060.1	2.634	0.1928	100.0%	1122.5	1123.2511	1	5.357	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1
	PARC_hx3_02_itms.12054.12054.2	3.732	0.2079	100.0%	1122.6322	1123.2511	1	5.886	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2
*	PARC_hx3_04_itms.14691.14691.2	4.2225	0.4275	100.0%	1517.4922	1517.6787	1	7.974	83.3%	2	R.LLEGEDAHLTQYK.K	2

Similarities: contaminant_KERATIN03(3:14)
contaminant_KERATIN02(2:15)
contaminant_KERATIN05(9:8)
contaminant_KERATIN08(8:9)
contaminant_KERATIN07(7:10)
contaminant_KERATIN04(2:15)

contaminant_KERATIN22

36.4%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.11054.11054.1	2.3064	0.2079	100.0%	1254.57	1255.3298	15	5.651	42.3%	1	R.GFSSGSAVVSGGSR.R	1
*	PARC_hx3_03_itms.11035.11035.2	4.4593	0.4678	100.0%	1255.0521	1255.3298	1	8.643	84.6%	4	R.GFSSGSAVVSGGSR.R	2
*	PARC_hx3_04_itms.14784.14784.2	4.5603	0.5449	100.0%	1351.8522	1352.452	1	10.681	78.1%	1	S.VAGGGGGFGAAGGFGGR.G	2
*	PARC_hx3_04_itms.13846.13846.2	4.1411	0.4009	100.0%	1126.8722	1127.1613	1	7.797	76.9%	1	F.SGGGFGGGGFGGGR.F	2
	PARC_hx3_03_itms.12410.12410.2	4.6789	0.0085	99.5%	1477.3722	1476.6726	1	6.109	90.9%	3	R.FLEQQNQVLQTK.W	2 2
	PARC_hx3_02_itms.12970.12970.1	3.1233	0.0314	98.4%	1477.57	1476.6726	3	4.663	54.5%	2	R.FLEQQNQVLQTK.W	1 1
*	PARC_hx3_04_itms.24622.24622.2	4.9154	0.4311	100.0%	1847.5122	1848.1492	1	7.286	73.3%	12	R.PINLEPIFQGYIDSLK.R	2
*	PARC_hx3_02_itms.13106.13106.2	3.4012	0.3069	100.0%	1038.0521	1038.1454	1	6.471	93.8%	1	R.YLDGLTAER.T	2
*	PARC_hx3_02_itms.16240.16240.2	5.6175	0.3774	100.0%	2131.4922	2129.2598	1	7.972	79.4%	4	R.TSQNSELNNMQDLVEDYK.K	2
*	PARC_hx3_02_itms.13515.13515.1	2.3032	0.1603	97.9%	1208.69	1209.3416	2	4.304	65.0%	1	R.TAAENDFVTLK.K	1
*	PARC_hx3_02_itms.13509.13509.2	3.2125	0.319	100.0%	1209.6122	1209.3416	1	6.065	80.0%	1	R.TAAENDFVTLK.K	2
*	PARC_hx3_02_itms.18425.18425.1	3.2829	0.1371	100.0%	1460.76	1461.6982	3	4.373	59.1%	1	K.VDLLNQEIEFLK.V	1
*	PARC_hx3_02_itms.18470.18470.2	4.611	0.0573	99.6%	1462.0122	1461.6982	1	5.68	81.8%	5	K.VDLLNQEIEFLK.V	2
	PARC_hx3_02_itms.18788.18788.1	3.3328	0.274	100.0%	1329.66	1330.5211	1	5.554	72.7%	2	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx3_03_itms.17829.17829.2	4.8473	0.1856	100.0%	1332.6921	1330.5211	1	5.71	81.8%	7	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_hx3_02_itms.11271.11271.1	1.9795	0.195	97.7%	1107.64	1108.196	3	5.035	68.8%	1	K.AQYEEIAQR.S	1 1 1 1
	PARC_hx3_02_itms.11249.11249.2	3.1946	0.337	100.0%	1108.3121	1108.196	1	5.625	87.5%	2	K.AQYEEIAQR.S	2 2 2 2
*	PARC_hx3_03_itms.10565.10565.2	3.0734	0.0861	98.5%	1393.4922	1392.5083	7	4.204	77.3%	2	R.SKEEAEALYHSK.Y	2
*	PARC_hx3_02_itms.11046.11046.2	3.0065	0.2758	100.0%	1177.3322	1177.256	1	5.393	77.8%	1	K.EEAEALYHSK.Y	2
*	PARC_hx3_04_itms.14798.14798.2	3.8731	0.3394	100.0%	1194.3121	1194.33	1	6.891	94.4%	4	K.YEELQVTVGR.H	2
	PARC_hx3_02_itms.12932.12932.2	3.0598	0.1587	99.6%	973.7922	974.102	7	4.317	92.9%	2	K.IEISELNR.V	2 2
	PARC_hx3_02_itms.12880.12880.1	2.3985	0.0732	98.4%	975.72	974.102	6	3.25	71.4%	1	K.IEISELNR.V	1 1
*	PARC_hx3_04_itms.12410.12410.2	2.7854	0.2499	100.0%	994.7322	995.16675	1	4.916	93.8%	2	R.LQGEIAHVK.K	2
*	PARC_hx3_02_itms.12939.12939.1	2.7965	0.3227	100.0%	1329.71	1330.3971	1	6.209	63.6%	1	K.NVQDAIADAEQR.G	1
*	PARC_hx3_02_itms.12926.12926.2	4.3586	0.3285	100.0%	1329.9321	1330.3971	1	7.451	86.4%	1	K.NVQDAIADAEQR.G	2
*	PARC_hx3_02_itms.15062.15062.1	3.1443	0.3428	100.0%	1371.71	1372.5181	1	6.986	72.7%	1	K.LNDLEEALQQAK.E	1
*	PARC_hx3_02_itms.15041.15041.2	5.3533	0.2595	100.0%	1373.3722	1372.5181	1	6.621	90.9%	3	K.LNDLEEALQQAK.E	2
	PARC_hx3_02_itms.13863.13863.1	2.9816	0.2629	100.0%	1139.48	1140.2965	1	5.927	75.0%	1	R.DYQELMNVK.L	1 1 1
	PARC_hx3_02_itms.13858.13858.2	3.1432	0.292	100.0%	1140.2722	1140.2965	2	6.005	87.5%	1	R.DYQELMNVK.L	2 2 2
	PARC_hx3_02_itms.16499.16499.2	2.4911	0.2679	99.6%	1264.6122	1264.4644	1	5.244	80.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2
	PARC_hx3_02_itms.10497.10497.2	2.5921	0.1503	99.2%	1006.0522	1006.0667	2	4.792	92.9%	2	K.LLEGEECR.M	2 2 2 2 2

Similarities: contaminant_KERATIN21(6:25)
contaminant_KERATIN13(4:27)
contaminant_KERATIN17(4:27)
contaminant_KERATIN18(6:25)
contaminant_KERATIN15(3:28)
contaminant_KERATIN14(4:27)
contaminant_KERATIN16(2:29)

contaminant_KERATIN13

33.3%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.17586.17586.2	5.455	0.3836	100.0%	1968.1122	1965.2542	1	6.93	71.9%	4	N.QSLLQPLNVEIDPEIQK.V	2
*	PARC_hx3_03_itms.16721.16721.2	5.0016	0.3219	100.0%	1836.6921	1837.1234	1	7.441	73.3%	3	Q.SLLQPLNVEIDPEIQK.V	2
*	PARC_hx3_02_itms.16782.16782.2	3.6117	0.3052	100.0%	1752.4521	1750.0453	1	6.449	75.0%	1	S.LLQPLNVEIDPEIQK.V	2
*	PARC_hx3_03_itms.15314.15314.2	4.1196	0.3246	100.0%	1385.4922	1384.5315	1	6.151	77.3%	8	K.SLNNQFASFIDK.V	2
	PARC_hx3_03_itms.12410.12410.2	4.6789	0.0085	99.5%	1477.3722	1476.6726	1	6.109	90.9%	3	R.FLEQQNQVLQTK.W	2 2
	PARC_hx3_02_itms.12970.12970.1	3.1233	0.0314	98.4%	1477.57	1476.6726	3	4.663	54.5%	2	R.FLEQQNQVLQTK.W	1 1
*	PARC_hx3_02_itms.15932.15932.2	4.2917	0.3901	100.0%	1477.7722	1476.6293	1	6.819	86.4%	3	K.WELLQQVDTSTR.T	2
*	PARC_hx3_04_itms.19190.19190.2	3.4266	0.2409	98.2%	1383.7922	1384.4875	1	5.711	65.0%	5	R.THNLEPYFESF.I	2
*	PARC_hx3_02_itms.13748.13748.2	3.426	0.3521	100.0%	1300.7122	1301.4316	1	6.921	83.3%	1	K.NMQDMVEDYR.N	2
	PARC_hx3_02_itms.10350.10350.2	2.9258	0.1487	99.5%	1153.4122	1153.234	79	4.201	75.0%	3	R.NKYEDEINK.R	2 2 2
*	PARC_hx3_04_itms.14710.14710.2	3.985	0.0502	99.3%	1422.4722	1422.5809	2	4.353	77.3%	5	K.RTNAENEFVTIK.K	2
*	PARC_hx3_02_itms.13319.13319.2	3.5664	0.3898	100.0%	1265.6921	1266.3934	1	6.659	85.0%	3	R.TNAENEFVTIK.K	2
*	PARC_hx3_03_itms.01074.01074.2	2.6016	0.316	95.6%	1796.7122	1797.0148	7	5.206	42.9%	1	K.LDNLQQEIDFLTALY.Q	2
*	PARC_hx3_02_itms.11061.11061.1	2.4904	0.2924	100.0%	1125.58	1126.2084	1	5.966	66.7%	1	K.AEAESLYQSK.Y	1
*	PARC_hx3_02_itms.11044.11044.2	3.8514	0.3012	100.0%	1126.1522	1126.2084	1	6.737	83.3%	1	K.AEAESLYQSK.Y	2
*	PARC_hx3_02_itms.13018.13018.2	3.9256	0.2116	100.0%	1180.1921	1180.303	1	6.372	94.4%	4	K.YEELQITAGR.H	2
*	PARC_hx3_02_itms.13041.13041.1	2.7238	0.1598	100.0%	1181.59	1180.303	12	4.18	66.7%	3	K.YEELQITAGR.H	1
	PARC_hx3_02_itms.12932.12932.2	3.0598	0.1587	99.6%	973.7922	974.102	7	4.317	92.9%	2	K.IEISELNR.V	2 2
	PARC_hx3_02_itms.12880.12880.1	2.3985	0.0732	98.4%	975.72	974.102	6	3.25	71.4%	1	K.IEISELNR.V	1 1
*	PARC_hx3_02_itms.13548.13548.1	1.8717	0.4061	100.0%	1716.82	1717.8333	1	7.121	50.0%	1	K.QISNLQQSISDAEQR.G	1
*	PARC_hx3_02_itms.13527.13527.2	4.7428	0.4602	100.0%	1718.6122	1717.8333	1	8.301	71.4%	3	K.QISNLQQSISDAEQR.G	2
*	PARC_hx3_02_itms.14600.14600.2	5.0913	0.267	100.0%	1358.2922	1358.4912	1	6.42	86.4%	3	K.LNDLEDALQQAK.E	2
*	PARC_hx3_02_itms.14574.14574.1	3.265	0.27	100.0%	1359.63	1358.4912	1	5.897	68.2%	3	K.LNDLEDALQQAK.E	1
*	PARC_hx3_02_itms.12816.12816.1	2.9384	0.2355	100.0%	1141.49	1142.2689	2	5.302	75.0%	1	R.DYQELMNTK.L	1
*	PARC_hx3_02_itms.12813.12813.2	3.113	0.231	100.0%	1141.9521	1142.2689	2	5.843	81.2%	1	R.DYQELMNTK.L	2
*	PARC_hx3_02_itms.11640.11640.1	2.4446	0.2453	100.0%	1033.65	1034.1112	1	5.423	56.2%	1	R.TLLEGEESR.M	1
*	PARC_hx3_02_itms.11637.11637.2	2.4915	0.1683	98.7%	1034.1522	1034.1112	6	4.088	75.0%	2	R.TLLEGEESR.M	2
*	PARC_hx3_03_itms.10511.10511.2	5.9243	0.3093	100.0%	2387.872	2385.298	1	10.927	40.0%	2	R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G	2

Similarities: contaminant_KERATIN21(1:27)
contaminant_KERATIN22(4:24)
contaminant_KERATIN17(1:27)

YOR106W

32.9%

283

32498

7.0

VAM3 SGDID:S000005632, Chr XV from 519121-519972, Verified ORF, "Syntaxin-related protein required for vacuolar assembly; functions with Vam7p in vacuolar protein trafficking; member of the syntaxin family of proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.11024.11024.2	4.0468	0.2399	100.0%	1594.2722	1593.65	1	5.213	61.5%	4	K.GNSQQEPQFSTNQK.T	2
*	PARC_hx3_02_itms.18398.18398.1	2.8973	0.1725	100.0%	1636.82	1637.7869	18	5.31	46.2%	2	K.ELSNLIETFAEQSR.V	1
*	PARC_hx3_02_itms.18413.18413.3	3.8333	0.2453	100.0%	1637.2144	1637.7869	1	6.593	48.1%	1	K.ELSNLIETFAEQSR.V	3
*	PARC_hx3_03_itms.17503.17503.2	5.38	0.3128	100.0%	1640.5922	1637.7869	1	7.006	76.9%	14	K.ELSNLIETFAEQSR.V	2
*	PARC_hx3_02_itms.13977.13977.1	2.4039	0.1395	97.9%	1531.92	1532.7002	8	4.429	54.2%	1	K.IETELIPNCTSVR.D	1
*	PARC_hx3_02_itms.13955.13955.2	4.3629	0.3703	100.0%	1533.4321	1532.7002	1	6.174	87.5%	1	K.IETELIPNCTSVR.D	2
*	PARC_hx3_04_itms.14414.14414.2	3.9674	0.305	100.0%	1366.8121	1366.5602	1	6.049	86.4%	3	K.IESNILIHQNGK.L	2
*	PARC_hx3_03_itms.10964.10964.2	3.5207	0.3606	100.0%	1415.4122	1415.5051	1	6.47	85.0%	3	K.YQSLQQSYNQR.K	2
*	PARC_hx3_03_itms.10213.10213.2	2.3248	0.1193	97.6%	888.59216	888.0086	84	3.561	62.5%	3	K.TPISPGTSK.E	2
*	PARC_hx3_02_itms.13155.13155.1	1.8031	0.157	98.4%	1266.58	1267.3782	13	3.836	55.0%	1	R.QDPESSYISIK.V	1
*	PARC_hx3_02_itms.13142.13142.2	2.5615	0.2142	99.5%	1267.3121	1267.3782	1	5.041	65.0%	2	R.QDPESSYISIK.V	2
*	PARC_hx3_02_itms.11339.11339.1	2.2367	0.3087	100.0%	1010.43	1011.1228	10	5.676	68.8%	1	R.IHTAVQEVN.A	1

contaminant_KERATIN17

32.7%

590

62461

8.1

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.10751.10751.2	1.8435	0.1667	96.5%	884.6722	884.9646	42	3.908	71.4%	1	R.TSFTSVSR.S	2
*	PARC_hx3_03_itms.10400.10400.2	2.628	0.3324	97.7%	1397.6522	1396.4623	2	5.416	53.3%	1	F.TSVSRSGGGGGGGFGR.V	2
*	PARC_hx3_03_itms.12290.12290.2	4.5482	0.551	100.0%	1410.7922	1411.5236	1	9.039	82.1%	2	R.VSLAGACGVGGYGSR.S	2
*	PARC_hx3_04_itms.20684.20684.2	3.801	0.3429	100.0%	1936.4321	1937.2468	1	6.683	46.9%	2	N.QSLLTPLNLQIDPSIQR.V	2
	PARC_hx3_03_itms.13844.13844.2	3.4355	0.1146	99.5%	1204.2922	1204.3684	1	5.719	83.3%	1	K.WTLLQEQGTK.T	2 2
	PARC_hx3_03_itms.18807.18807.2	4.5507	0.4077	100.0%	1890.9122	1892.1216	1	7.887	75.0%	11	R.QNLEPLFEQYINNLR.R	2 2 2
*	PARC_hx3_02_itms.16229.16229.2	3.366	0.1385	99.6%	1239.8922	1239.3856	3	6.483	83.3%	1	R.NMQDLVEDFK.N	2
	PARC_hx3_02_itms.10350.10350.2	2.9258	0.1487	99.5%	1153.4122	1153.234	79	4.201	75.0%	3	K.NKYEDEINK.R	2 2 2
*	PARC_hx3_02_itms.17912.17912.2	3.0773	0.2918	100.0%	1427.7722	1426.6858	1	6.156	81.8%	1	K.VDALMDEINFMK.M	2
	PARC_hx3_02_itms.18788.18788.1	3.3328	0.274	100.0%	1329.66	1330.5211	1	5.554	72.7%	2	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx3_03_itms.17829.17829.2	4.8473	0.1856	100.0%	1332.6921	1330.5211	1	5.71	81.8%	7	R.NLDLDSIIAEVK.A	2 2 2 2
*	PARC_hx3_02_itms.11170.11170.2	3.3001	0.329	100.0%	1093.9922	1094.1692	1	6.15	93.8%	1	K.AQYEEIANR.S	2
*	PARC_hx3_04_itms.13769.13769.2	2.6916	0.2069	99.5%	1485.3121	1486.5809	5	4.573	54.5%	1	R.SRTEAESWYQTK.Y	2
*	PARC_hx3_02_itms.12399.12399.1	2.2048	0.2938	100.0%	1242.47	1243.3153	1	6.12	55.6%	1	R.TEAESWYQTK.Y	1
*	PARC_hx3_02_itms.13943.13943.2	3.897	0.3979	100.0%	1702.2922	1702.7875	1	7.134	75.0%	1	K.QCANLQNAIADAEQR.G	2
*	PARC_hx3_02_itms.11571.11571.2	2.8892	0.239	95.7%	1228.5521	1229.3353	1	5.048	80.0%	1	N.LQNAIADAEQR.G	2
*	PARC_hx3_02_itms.13984.13984.1	2.274	0.1663	97.8%	1143.51	1144.3104	11	4.235	61.1%	1	K.LAELEEALQK.A	1
*	PARC_hx3_02_itms.13976.13976.2	4.0584	0.2556	100.0%	1144.3322	1144.3104	1	5.223	88.9%	1	K.LAELEEALQK.A	2
*	PARC_hx3_02_itms.12212.12212.2	2.9213	0.1879	99.6%	1156.3722	1156.2959	7	4.949	75.0%	1	R.EYQELMNTK.L	2
	PARC_hx3_02_itms.16499.16499.2	2.4911	0.2679	99.6%	1264.6122	1264.4644	1	5.244	80.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2
	PARC_hx3_02_itms.10497.10497.2	2.5921	0.1503	99.2%	1006.0522	1006.0667	2	4.792	92.9%	2	K.LLEGEECR.L	2 2 2 2 2

Similarities: contaminant_KERATIN21(6:15)
contaminant_KERATIN22(4:17)
contaminant_KERATIN13(1:20)
contaminant_KERATIN18(6:15)
contaminant_KERATIN15(1:20)
contaminant_KERATIN14(2:19)

YMR197C

32.3%

217

24668

6.6

VTI1 SGDID:S000004810, Chr XIII from 659197-658544, reverse complement, Verified ORF, "Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.12341.12341.1	2.5581	0.2011	100.0%	1454.67	1455.6108	2	5.073	50.0%	1	K.ASLAEAPSQPLSQR.N	1
*	PARC_hx3_03_itms.11599.11599.2	4.2123	0.4929	100.0%	1454.8722	1455.6108	1	7.97	65.4%	2	K.ASLAEAPSQPLSQR.N	2
*	PARC_hx3_04_itms.14622.14622.2	2.367	0.1135	97.0%	1343.4122	1343.4825	1	4.588	68.2%	2	K.RPLQSLVDSGDR.D	2
*	PARC_hx3_02_itms.14765.14765.1	3.2344	0.3698	100.0%	1692.85	1693.7673	1	6.683	50.0%	2	R.LFGDLNASNIDDDQR.Q	1
*	PARC_hx3_02_itms.14798.14798.2	5.5284	0.429	100.0%	1692.9722	1693.7673	1	8.449	82.1%	6	R.LFGDLNASNIDDDQR.Q	2
*	PARC_hx3_02_itms.17655.17655.2	5.1344	0.4738	100.0%	1879.4321	1879.1536	1	8.466	68.8%	3	R.IANETEGIGSQIMMDLR.S	2
*	PARC_hx3_02_itms.14266.14266.1	2.5643	0.2959	100.0%	1414.65	1415.5425	1	5.437	63.6%	1	R.QTLFQADSYVDK.S	1
*	PARC_hx3_02_itms.14313.14313.2	4.0151	0.3	100.0%	1416.4321	1415.5425	1	6.102	90.9%	3	R.QTLFQADSYVDK.S	2

contaminant_KERATIN18

31.3%

562

59822

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.12167.12167.2	3.4288	0.4143	100.0%	1027.1322	1027.1222	1	7.323	88.9%	1	R.SGFSSISVSR.S	2
*	PARC_hx3_04_itms.13613.13613.2	3.2116	0.3874	100.0%	1669.0521	1668.7324	1	6.72	47.2%	1	R.SRGSGGLGGACGGAGFGSR.S	2
*	PARC_hx3_04_itms.13606.13606.2	3.4881	0.3777	100.0%	1426.0122	1425.4668	4	7.091	46.9%	1	R.GSGGLGGACGGAGFGSR.S	2
*	PARC_hx3_03_itms.12647.12647.2	4.4443	0.479	100.0%	1600.9722	1599.7069	1	8.694	65.6%	3	R.ISIGGGSCAISGGYGSR.A	2
	PARC_hx3_03_itms.13844.13844.2	3.4355	0.1146	99.5%	1204.2922	1204.3684	1	5.719	83.3%	1	K.WTLLQEQGTK.T	2 2
	PARC_hx3_03_itms.18807.18807.2	4.5507	0.4077	100.0%	1890.9122	1892.1216	1	7.887	75.0%	11	R.QNLEPLFEQYINNLR.R	2 2 2
	PARC_hx3_02_itms.13608.13608.2	3.2896	0.2692	100.0%	1223.9321	1223.3684	2	5.985	75.0%	1	R.TAAENEFVTLK.K	2 2
	PARC_hx3_03_itms.16526.16526.2	3.5628	0.2608	100.0%	1408.4122	1408.551	1	5.175	77.3%	5	K.ADTLTDEINFLR.A	2 2
	PARC_hx3_02_itms.18788.18788.1	3.3328	0.274	100.0%	1329.66	1330.5211	1	5.554	72.7%	2	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_hx3_03_itms.17829.17829.2	4.8473	0.1856	100.0%	1332.6921	1330.5211	1	5.71	81.8%	7	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_hx3_02_itms.11271.11271.1	1.9795	0.195	97.7%	1107.64	1108.196	3	5.035	68.8%	1	K.AQYEEIAQR.S	1 1 1 1
	PARC_hx3_02_itms.11249.11249.2	3.1946	0.337	100.0%	1108.3121	1108.196	1	5.625	87.5%	2	K.AQYEEIAQR.S	2 2 2 2
	PARC_hx3_02_itms.14396.14396.2	3.322	0.3485	100.0%	1662.0922	1659.7625	1	5.997	71.4%	2	K.QCANLQAAIADAEQR.G	2 2
	PARC_hx3_02_itms.13982.13982.2	3.9036	0.3498	100.0%	1116.2522	1116.2566	1	5.915	88.9%	1	K.LEGLEDALQK.A	2 2
	PARC_hx3_02_itms.16499.16499.2	2.4911	0.2679	99.6%	1264.6122	1264.4644	1	5.244	80.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2
	PARC_hx3_02_itms.10497.10497.2	2.5921	0.1503	99.2%	1006.0522	1006.0667	2	4.792	92.9%	2	K.LLEGEECR.L	2 2 2 2 2
*	PARC_hx3_03_itms.11172.11172.2	4.0702	0.4196	100.0%	1436.3322	1436.562	1	7.207	71.9%	1	R.ATGGGLSSVGGGSSTIK.Y	2

Similarities: contaminant_KERATIN21(11:6)
contaminant_KERATIN22(6:11)
contaminant_KERATIN17(6:11)
contaminant_KERATIN15(1:16)
contaminant_KERATIN14(2:15)
contaminant_KERATIN16(2:15)

contaminant_KERATIN05

27.6%

471

51531

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.11342.11342.2	3.9413	0.4015	100.0%	1108.6921	1107.2181	1	7.319	95.0%	1	R.ISSVLAGGSCR.A	2
	PARC_hx3_02_itms.11624.11624.2	2.8329	0.2513	100.0%	1091.0322	1091.2273	2	5.405	87.5%	1	K.VTMQNLNDR.L	2 2 2
	PARC_hx3_02_itms.11920.11920.2	2.2138	0.1811	98.7%	809.6922	809.93774	5	4.194	83.3%	1	R.LASYLDK.V	2 2 2 2 2 2
	PARC_hx3_02_itms.11912.11912.1	2.2716	0.0967	98.1%	810.55	809.93774	51	4.288	75.0%	2	R.LASYLDK.V	1 1 1 1 1 1
	PARC_hx3_02_itms.12040.12040.2	2.5325	0.1886	99.5%	807.65216	807.8815	1	4.578	91.7%	1	R.LAADDFR.T	2 2 2 2 2
	PARC_hx3_02_itms.14591.14591.1	2.0106	0.0977	97.1%	1029.66	1030.2096	37	4.69	62.5%	1	R.VLDELTLAR.A	1 1 1 1
	PARC_hx3_02_itms.14588.14588.2	3.6549	0.2643	100.0%	1030.2122	1030.2096	1	5.792	93.8%	1	R.VLDELTLAR.A	2 2 2 2
*	PARC_hx3_02_itms.15622.15622.2	3.4858	0.336	100.0%	1276.6721	1277.4755	1	6.509	85.0%	1	R.ADLEMQIESLK.E	2
*	PARC_hx3_02_itms.16784.16784.2	3.5172	0.3277	100.0%	1173.0922	1173.2671	1	6.634	81.2%	1	K.DAEEWFFTK.T	2
*	PARC_hx3_02_itms.16781.16781.1	2.527	0.1017	98.1%	1173.38	1173.2671	2	4.963	68.8%	1	K.DAEEWFFTK.T	1
	PARC_hx3_02_itms.11213.11213.2	4.1371	0.3674	100.0%	1362.4122	1362.4796	1	7.543	75.0%	1	R.EVATNSELVQSGK.S	2 2
	PARC_hx3_02_itms.12275.12275.1	2.0908	0.1627	98.1%	1220.57	1221.3068	14	4.198	55.0%	1	K.ASLENSLEETK.G	1 1 1
	PARC_hx3_02_itms.12284.12284.2	3.2081	0.2446	100.0%	1221.3121	1221.3068	1	6.102	75.0%	1	K.ASLENSLEETK.G	2 2 2
	PARC_hx3_02_itms.15365.15365.2	4.2594	0.2833	100.0%	1343.6721	1343.523	1	6.772	86.4%	1	M.IGSVEEQLAQLR.C	2 2 2
	PARC_hx3_02_itms.12060.12060.1	2.634	0.1928	100.0%	1122.5	1123.2511	1	5.357	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1
	PARC_hx3_02_itms.12054.12054.2	3.732	0.2079	100.0%	1122.6322	1123.2511	1	5.886	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2
*	PARC_hx3_04_itms.14874.14874.2	5.3463	0.5603	100.0%	2309.412	2310.396	1	9.045	42.9%	1	R.LLEGEDAHLSSSQFSSGSQSSR.D	2
*	PARC_hx3_04_itms.14852.14852.3	4.9297	0.4647	100.0%	2310.0244	2310.396	1	8.359	41.7%	1	R.LLEGEDAHLSSSQFSSGSQSSR.D	3

Similarities: contaminant_KERATIN03(4:14)
contaminant_KERATIN02(2:16)
contaminant_KERATIN12(9:9)
contaminant_KERATIN08(11:7)
contaminant_KERATIN07(9:9)
contaminant_KERATIN04(2:16)

YLL024C

26.9%

639

69470

5.1

SSA2 SGDID:S000003947, Chr XII from 97484-95565, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.14879.14879.2	2.7669	0.4059	100.0%	1457.8722	1458.5676	1	8.042	79.2%	1	R.TTPSFVGFTDTER.L	2
	PARC_hx3_03_itms.16975.16975.2	3.0486	0.2299	99.6%	1551.4922	1551.798	1	5.552	61.5%	3	K.NFTPEQISSMVLGK.M	2 2
	PARC_hx3_02_itms.15519.15519.2	3.6795	0.3942	100.0%	1896.5322	1896.0667	1	6.236	56.2%	1	K.VNDAVVTVPAYFNDSQR.Q	2 2
	PARC_hx3_03_itms.15251.15251.2	5.2271	0.4618	100.0%	1660.0721	1660.9078	1	8.916	83.3%	2	R.IINEPTAAAIAYGLDK.K	2 2
	PARC_hx3_02_itms.11898.11898.2	4.4486	0.3801	100.0%	1676.3121	1676.6964	1	8.02	76.7%	1	K.ATAGDTHLGGEDFDNR.L	2 2
	PARC_hx3_02_itms.16780.16780.2	3.5823	0.3472	100.0%	1299.8121	1300.4198	1	6.093	88.9%	2	R.FEELCADLFR.S	2 2
	PARC_hx3_03_itms.13908.13908.2	4.2525	0.1364	99.8%	1460.4521	1460.6273	1	7.095	80.8%	3	K.SQVDEIVLVGGSTR.I	2 2
	PARC_hx3_02_itms.19203.19203.2	5.7638	0.5185	100.0%	2581.4722	2578.7925	1	9.465	52.0%	1	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_hx3_02_itms.18322.18322.2	4.3002	0.507	100.0%	2126.2922	2124.3147	1	8.325	61.1%	1	F.STYADNQPGVLIQVFEGER.A	2 2
	PARC_hx3_03_itms.16996.16996.2	3.9281	0.3423	100.0%	1772.1522	1772.9554	1	7.344	63.3%	2	Y.ADNQPGVLIQVFEGER.A	2 2
	PARC_hx3_04_itms.17140.17140.2	3.4154	0.3484	100.0%	1184.4922	1184.3806	1	6.952	90.0%	9	K.FELSGIPPAPR.G	2 2
*	PARC_hx3_04_itms.17452.17452.2	2.6107	0.1775	98.5%	1751.2522	1751.8877	30	4.489	40.0%	1	K.AEETIAWLDSNTTATK.E	2

Similarities: YAL005C(10:2)

YDR382W

26.4%

110

11050

4.1

RPP2B SGDID:S000002790, Chr IV from 1239482-1239814, Verified ORF, "Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.14021.14021.2	5.2932	0.4058	100.0%	1638.4922	1638.9047	1	7.721	71.9%	1	Y.LLLVQGGNAAPSAADIK.A	2
*	PARC_hx3_02_itms.15094.15094.2	2.6104	0.1977	99.2%	1273.4722	1274.4136	2	5.523	72.7%	1	K.GSLEEIIAEGQK.K	2

YAL005C

24.3%

642

69768

5.1

SSA1 SGDID:S000000004, Chr I from 141433-139505, reverse complement, Verified ORF, "ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.15380.15380.2	3.3374	0.4751	100.0%	1472.2322	1472.5945	1	7.288	79.2%	1	R.TTPSFVAFTDTER.L	2
	PARC_hx3_03_itms.16975.16975.2	3.0486	0.2299	99.6%	1551.4922	1551.798	1	5.552	61.5%	3	K.NFTPEQISSMVLGK.M	2 2
	PARC_hx3_02_itms.15519.15519.2	3.6795	0.3942	100.0%	1896.5322	1896.0667	1	6.236	56.2%	1	K.VNDAVVTVPAYFNDSQR.Q	2 2
	PARC_hx3_03_itms.15251.15251.2	5.2271	0.4618	100.0%	1660.0721	1660.9078	1	8.916	83.3%	2	R.IINEPTAAAIAYGLDK.K	2 2
	PARC_hx3_02_itms.11898.11898.2	4.4486	0.3801	100.0%	1676.3121	1676.6964	1	8.02	76.7%	1	K.ATAGDTHLGGEDFDNR.L	2 2
	PARC_hx3_02_itms.16780.16780.2	3.5823	0.3472	100.0%	1299.8121	1300.4198	1	6.093	88.9%	2	R.FEELCADLFR.S	2 2
	PARC_hx3_03_itms.13908.13908.2	4.2525	0.1364	99.8%	1460.4521	1460.6273	1	7.095	80.8%	3	K.SQVDEIVLVGGSTR.I	2 2
	PARC_hx3_02_itms.19203.19203.2	5.7638	0.5185	100.0%	2581.4722	2578.7925	1	9.465	52.0%	1	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_hx3_02_itms.18322.18322.2	4.3002	0.507	100.0%	2126.2922	2124.3147	1	8.325	61.1%	1	F.STYADNQPGVLIQVFEGER.A	2 2
	PARC_hx3_03_itms.16996.16996.2	3.9281	0.3423	100.0%	1772.1522	1772.9554	1	7.344	63.3%	2	Y.ADNQPGVLIQVFEGER.A	2 2
	PARC_hx3_04_itms.17140.17140.2	3.4154	0.3484	100.0%	1184.4922	1184.3806	1	6.952	90.0%	9	K.FELSGIPPAPR.G	2 2

Similarities: YLL024C(10:1)

U	YDR418W	2	2	23.0%	165	17823	9.4	RPL12B SGDID:S000002826, Chr IV from 1301606-1302103, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins"
U	YEL054C	2	2	23.0%	165	17823	9.4	RPL12A SGDID:S000000780, Chr V from 53218-52721, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Bp; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_04_itms.20447.20447.2	3.7566	0.3852	100.0%	1813.0322	1814.1326	1	6.529	58.3%	1	R.QAAASVVPSASSLVITALK.E	2
	PARC_hx3_04_itms.19259.19259.2	2.921	0.1979	99.3%	2075.4521	2075.2395	2	4.304	47.2%	1	K.NPHDIIEGINAGEIEIPEN.-	2

YLR447C

21.4%

345

39791

4.6

VMA6 SGDID:S000004439, Chr XII from 1027889-1026852, reverse complement, Verified ORF, "Subunit D of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found in the endomembrane system; stabilizes VO subunits; required for V1 domain assembly on the vacuolar membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.20435.20435.3	4.0705	0.1585	96.7%	2567.6943	2567.7786	2	4.199	26.2%	1	R.NGLLSNNQYINLTQCDTLEDLK.L	3
*	PARC_hx3_02_itms.22037.22037.2	4.608	0.4669	100.0%	2274.9922	2276.5042	1	8.226	58.3%	1	K.AYLEDFYNFVTEEIPEPAK.E	2
*	PARC_hx3_02_itms.16959.16959.2	4.2804	0.4482	100.0%	2043.4321	2044.2665	1	8.253	66.7%	3	R.SINIALNSLQSSDIDPDLK.S	2
*	PARC_hx3_04_itms.19398.19398.2	5.1316	0.374	100.0%	1717.3322	1717.8883	1	7.065	80.8%	1	R.NITWIAECIAQNQR.E	2

contaminant_KERATIN08

21.3%

469

50499

5.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_02_itms.11624.11624.2	2.8329	0.2513	100.0%	1091.0322	1091.2273	2	5.405	87.5%	1	K.VTMQNLNDR.L	2 2 2
	PARC_hx3_02_itms.11920.11920.2	2.2138	0.1811	98.7%	809.6922	809.93774	5	4.194	83.3%	1	R.LASYLDK.V	2 2 2 2 2 2
	PARC_hx3_02_itms.11912.11912.1	2.2716	0.0967	98.1%	810.55	809.93774	51	4.288	75.0%	2	R.LASYLDK.V	1 1 1 1 1 1
	PARC_hx3_02_itms.12040.12040.2	2.5325	0.1886	99.5%	807.65216	807.8815	1	4.578	91.7%	1	R.LAADDFR.T	2 2 2 2 2
	PARC_hx3_02_itms.14591.14591.1	2.0106	0.0977	97.1%	1029.66	1030.2096	37	4.69	62.5%	1	R.VLDELTLAR.T	1 1 1 1
	PARC_hx3_02_itms.14588.14588.2	3.6549	0.2643	100.0%	1030.2122	1030.2096	1	5.792	93.8%	1	R.VLDELTLAR.T	2 2 2 2
	PARC_hx3_04_itms.15004.15004.2	2.948	0.0144	97.1%	1241.6522	1242.3923	1	5.849	72.2%	2	K.NHEEEMLALR.G	2 2
*	PARC_hx3_02_itms.16138.16138.1	2.1683	0.3151	100.0%	1096.46	1097.2126	2	6.091	68.8%	1	R.DAETWFLSK.T	1
	PARC_hx3_02_itms.12275.12275.1	2.0908	0.1627	98.1%	1220.57	1221.3068	14	4.198	55.0%	1	K.ASLENSLEETK.G	1 1 1
	PARC_hx3_02_itms.12284.12284.2	3.2081	0.2446	100.0%	1221.3121	1221.3068	1	6.102	75.0%	1	K.ASLENSLEETK.G	2 2 2
	PARC_hx3_02_itms.15365.15365.2	4.2594	0.2833	100.0%	1343.6721	1343.523	1	6.772	86.4%	1	L.IGSVEEQLAQLR.C	2 2 2
*	PARC_hx3_02_itms.16569.16569.2	3.7985	0.316	100.0%	2144.0923	2142.3516	1	5.264	59.4%	1	R.CEMEQQSQEYQILLDVK.T	2
	PARC_hx3_02_itms.12060.12060.1	2.634	0.1928	100.0%	1122.5	1123.2511	1	5.357	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1
	PARC_hx3_02_itms.12054.12054.2	3.732	0.2079	100.0%	1122.6322	1123.2511	1	5.886	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2

Similarities: contaminant_KERATIN03(4:10)
contaminant_KERATIN02(2:12)
contaminant_KERATIN12(8:6)
contaminant_KERATIN05(11:3)
contaminant_KERATIN07(10:4)
contaminant_KERATIN04(2:12)

contaminant_gi|7463016|pir||S77957

20.1%

269

27961

6.7

lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.12514.12514.2	3.7839	0.3227	100.0%	1491.2922	1491.5688	1	6.861	85.0%	3	V.VYWNYQNSTCR.A	2
*	PARC_hx3_04_itms.12932.12932.2	3.4277	0.4163	100.0%	1228.9122	1229.2604	1	6.365	100.0%	4	Y.WNYQNSTCR.A	2
*	PARC_hx3_04_itms.21056.21056.2	3.4789	0.3126	100.0%	1165.4321	1165.2963	1	5.694	93.8%	9	Y.NLFWAGWDR.R	2
*	PARC_hx3_04_itms.20229.20229.2	3.3005	0.2823	100.0%	1051.1122	1051.1924	3	5.207	92.9%	11	N.LFWAGWDR.R	2
*	PARC_hx3_04_itms.17552.17552.2	2.6036	0.2314	96.2%	938.0122	938.03296	2	4.184	100.0%	1	L.FWAGWDR.R	2
*	PARC_hx3_02_itms.12494.12494.2	4.7116	0.4513	100.0%	1749.4321	1749.8718	1	8.492	67.6%	2	S.GGVTEPGSSGSPIYSPEK.R	2
*	PARC_hx3_02_itms.12462.12462.1	3.7191	0.3579	100.0%	1750.8	1749.8718	1	6.636	50.0%	2	S.GGVTEPGSSGSPIYSPEK.R	1
*	PARC_hx3_02_itms.12453.12453.2	3.5812	0.3126	100.0%	1692.2522	1692.82	1	5.99	62.5%	1	G.GVTEPGSSGSPIYSPEK.R	2
*	PARC_hx3_02_itms.12246.12246.2	3.8966	0.4425	100.0%	1635.5721	1635.768	1	7.283	66.7%	2	G.VTEPGSSGSPIYSPEK.R	2
*	PARC_hx3_02_itms.12981.12981.1	2.5271	0.319	100.0%	1305.46	1306.4149	1	6.153	62.5%	1	E.PGSSGSPIYSPEK.R	1
*	PARC_hx3_02_itms.11621.11621.2	2.8875	0.2339	95.9%	1152.4922	1152.2462	4	5.497	65.0%	1	G.SSGSPIYSPEK.R	2
*	PARC_hx3_02_itms.11625.11625.1	2.5631	0.3302	100.0%	1064.54	1065.1681	1	5.475	61.1%	1	S.SGSPIYSPEK.R	1
*	PARC_hx3_02_itms.11654.11654.2	2.5116	0.4009	100.0%	1064.6322	1065.1681	1	6.416	77.8%	1	S.SGSPIYSPEK.R	2
*	PARC_hx3_04_itms.13572.13572.2	2.5347	0.2632	95.8%	878.15216	878.0189	3	5.087	75.0%	1	R.VLGQLHGGP.S	2
*	PARC_hx3_04_itms.13388.13388.2	2.7386	0.2689	96.9%	964.8522	965.0971	1	6.658	83.3%	1	R.VLGQLHGGPS.S	2
*	PARC_hx3_04_itms.13376.13376.2	3.3611	0.3358	100.0%	1052.1122	1052.1753	1	6.393	85.0%	4	R.VLGQLHGGPSS.C	2
*	PARC_hx3_04_itms.13311.13311.1	2.4953	0.3887	100.0%	1052.63	1052.1753	1	6.37	65.0%	1	R.VLGQLHGGPSS.C	1
*	PARC_hx3_04_itms.13442.13442.1	3.2542	0.4635	100.0%	1211.65	1212.3141	1	7.636	59.1%	3	R.VLGQLHGGPSSC.S	1
*	PARC_hx3_04_itms.13430.13430.2	4.0328	0.4595	100.0%	1212.7522	1212.3141	1	8.297	95.5%	10	R.VLGQLHGGPSSC.S	2
*	PARC_hx3_04_itms.13355.13355.2	3.0454	0.3313	100.0%	1299.1921	1299.3923	1	6.829	66.7%	1	R.VLGQLHGGPSSCS.A	2
*	PARC_hx3_04_itms.13450.13450.2	3.644	0.3289	100.0%	1370.1122	1370.4711	1	7.122	76.9%	1	R.VLGQLHGGPSSCSA.T	2
*	PARC_hx3_04_itms.13454.13454.2	3.284	0.4598	100.0%	1471.3322	1471.5762	1	8.376	64.3%	1	R.VLGQLHGGPSSCSAT.G	2
*	PARC_hx3_04_itms.13508.13508.2	3.4317	0.2106	95.9%	1529.1122	1528.628	1	6.37	63.3%	1	R.VLGQLHGGPSSCSATG.A	2
*	PARC_hx3_04_itms.13402.13402.1	2.6164	0.3838	100.0%	1113.51	1113.1815	1	6.271	65.0%	1	V.LGQLHGGPSSC.S	1
*	PARC_hx3_04_itms.13395.13395.1	2.3143	0.4213	100.0%	999.35	1000.0221	1	7.061	61.1%	1	L.GQLHGGPSSC.S	1

YDR481C

17.0%

566

63004

5.6

PHO8 SGDID:S000002889, Chr IV from 1420240-1418540, reverse complement, Verified ORF, "Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.16384.16384.2	4.1286	0.3567	100.0%	2043.7122	2044.189	1	7.11	50.0%	1	R.SSDSLVTDSAAGATAFACALK.S	2
*	PARC_hx3_03_itms.12587.12587.2	3.1836	0.2218	98.3%	960.1322	960.16187	1	5.631	87.5%	1	Y.LTGLVVTTR.I	2
*	PARC_hx3_04_itms.14960.14960.2	2.6925	0.0895	97.0%	1766.8322	1767.8926	1	4.033	53.3%	1	R.ITDATPASFSSHVDYR.W	2
*	PARC_hx3_03_itms.14174.14174.2	3.4288	0.4177	100.0%	1018.21216	1017.2316	1	6.858	94.4%	1	R.VVDLLMGGGR.S	2
*	PARC_hx3_02_itms.16263.16263.2	4.2458	0.4228	100.0%	1966.2522	1967.0587	1	8.192	59.4%	1	R.DLIDEAQSNGWQYVGDR.K	2
*	PARC_hx3_03_itms.11859.11859.1	1.9948	0.075	97.2%	800.39	800.97375	11	3.927	64.3%	1	K.VALGALEK.A	1
*	PARC_hx3_04_itms.11828.11828.2	4.3603	0.467	100.0%	1646.2322	1645.7317	1	8.39	71.4%	2	R.IDHAGHQNDPASQVR.E	2

contaminant_KERATIN07

15.2%

473

50915

5.5

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_02_itms.11920.11920.2	2.2138	0.1811	98.7%	809.6922	809.93774	5	4.194	83.3%	1	R.LASYLDK.V	2 2 2 2 2 2
	PARC_hx3_02_itms.11912.11912.1	2.2716	0.0967	98.1%	810.55	809.93774	51	4.288	75.0%	2	R.LASYLDK.V	1 1 1 1 1 1
*	PARC_hx3_02_itms.16692.16692.2	5.6473	0.4179	100.0%	2065.9521	2065.3774	1	7.441	61.1%	5	K.IIAATIENAQPILQIDNAR.L	2
	PARC_hx3_02_itms.12040.12040.2	2.5325	0.1886	99.5%	807.65216	807.8815	1	4.578	91.7%	1	R.LAADDFR.T	2 2 2 2 2
	PARC_hx3_02_itms.14591.14591.1	2.0106	0.0977	97.1%	1029.66	1030.2096	37	4.69	62.5%	1	R.VLDELTLAR.T	1 1 1 1
	PARC_hx3_02_itms.14588.14588.2	3.6549	0.2643	100.0%	1030.2122	1030.2096	1	5.792	93.8%	1	R.VLDELTLAR.T	2 2 2 2
	PARC_hx3_04_itms.15004.15004.2	2.948	0.0144	97.1%	1241.6522	1242.3923	1	5.849	72.2%	2	K.NHEEEMLALR.G	2 2
	PARC_hx3_02_itms.12275.12275.1	2.0908	0.1627	98.1%	1220.57	1221.3068	14	4.198	55.0%	1	K.ASLENSLEETK.G	1 1 1
	PARC_hx3_02_itms.12284.12284.2	3.2081	0.2446	100.0%	1221.3121	1221.3068	1	6.102	75.0%	1	K.ASLENSLEETK.G	2 2 2
	PARC_hx3_02_itms.12060.12060.1	2.634	0.1928	100.0%	1122.5	1123.2511	1	5.357	75.0%	1	R.LEQEIATYR.R	1 1 1 1 1
	PARC_hx3_02_itms.12054.12054.2	3.732	0.2079	100.0%	1122.6322	1123.2511	1	5.886	93.8%	1	R.LEQEIATYR.R	2 2 2 2 2

YBR080C

13.6%

758

84056

8.0

SEC18 SGDID:S000000284, Chr II from 400884-398608, reverse complement, Verified ORF, "ATPase required for the release of Sec17p during the 'priming' step in homotypic vacuole fusion and for ER to Golgi transport; homolog of the mammalian NSF"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.14877.14877.2	3.5702	0.2887	100.0%	1590.4321	1590.7355	1	6.209	69.2%	1	R.TWGGWSLNQDVQAK.A	2
*	PARC_hx3_02_itms.16846.16846.2	5.3024	0.556	100.0%	2343.4722	2343.5933	1	8.718	54.5%	1	R.NVQAIDLGDIEPTSAVATGIETK.G	2
*	PARC_hx3_02_itms.16336.16336.2	2.8464	0.2093	99.5%	1657.0922	1657.821	4	4.637	50.0%	1	R.GDGTGVGDNVVNQLLAK.M	2
*	PARC_hx3_02_itms.19115.19115.2	2.1169	0.1794	96.9%	2007.1721	2004.327	2	3.676	35.3%	1	K.MDGVDQLNNILVIGMTNR.K	2
*	PARC_hx3_03_itms.15239.15239.2	3.1688	0.2092	100.0%	1106.1921	1106.3073	1	5.07	87.5%	1	R.LQIFDIQTK.K	2
*	PARC_hx3_04_itms.23265.23265.2	3.9213	0.4317	100.0%	2437.9922	2438.6501	1	8.091	52.4%	2	R.EDFLNALNDVTPAFGISEEDLK.T	2

U	YJL034W	7	17	13.3%	682	74468	4.9	KAR2 SGDID:S000003571, Chr X from 381243-383291, Verified ORF, "ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding in the ER and may play a role in ER export of soluble proteins; regulates the unfolded protein response via interaction with Ire1p"
U	contaminant_GR78_YEAST	7	17	13.3%	682	74468	4.9	owl\|P16474\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx3_02_itms.14381.14381.2	3.7283	0.4882	100.0%	1514.5922	1514.6317	1	8.088	75.0%	1	R.ITPSYVAFTDDER.L	2
PARC_hx3_02_itms.15326.15326.2	4.7973	0.2661	100.0%	1673.4521	1673.8662	1	6.814	82.1%	4	K.NQVAANPQNTIFDIK.R	2
PARC_hx3_04_itms.22242.22242.2	3.187	0.2763	100.0%	1520.6122	1521.812	1	6.799	69.2%	2	K.VFTPEEISGMILGK.M	2
PARC_hx3_02_itms.15584.15584.2	5.146	0.4852	100.0%	1647.2922	1646.881	1	9.121	83.3%	1	R.IVNEPTAAAIAYGLDK.S	2
PARC_hx3_03_itms.17512.17512.2	3.2757	0.1792	99.8%	1268.0922	1268.4521	3	4.125	77.8%	1	K.FEELNLDLFK.K	2
PARC_hx3_02_itms.16170.16170.2	3.6861	0.2595	100.0%	1427.2322	1427.5969	1	5.189	72.7%	1	K.VQQLLESYFDGK.K	2
PARC_hx3_04_itms.17414.17414.2	3.0053	0.3148	100.0%	1197.9922	1198.4075	1	5.818	85.0%	7	K.FELTGIPPAPR.G	2

YBR221C

12.3%

366

40054

5.3

PDB1 SGDID:S000000425, Chr II from 666248-665148, reverse complement, Verified ORF, "E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved multi-protein complex found in mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.20856.20856.2	3.1129	0.1213	98.6%	2149.0122	2147.3025	1	4.296	50.0%	1	R.DDDVFLIGEEVAQYNGAYK.V	2
*	PARC_hx3_03_itms.14153.14153.2	3.125	0.2851	100.0%	1221.3722	1221.3989	1	5.954	80.0%	2	K.YGVSAEVINLR.S	2
*	PARC_hx3_02_itms.17500.17500.2	3.8388	0.2647	100.0%	1724.4722	1722.9324	1	6.607	60.7%	1	K.ELEDFAFPDTPTIVK.A	2

YKL196C

12.0%

200

22707

5.7

YKT6 SGDID:S000001679, Chr XI from 75539-74937, reverse complement, Verified ORF, "Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.17822.17822.2	3.0734	0.1423	99.5%	1245.6322	1246.3647	1	5.251	77.8%	1	K.DLSQFGFFER.S	2
*	PARC_hx3_02_itms.14202.14202.2	3.1207	0.4113	100.0%	1620.9521	1621.6978	1	6.533	65.4%	1	K.EEWADVTETNDALK.M	2

YLR058C

11.7%

469

52219

7.4

SHM2 SGDID:S000004048, Chr XII from 259402-257993, reverse complement, Verified ORF, "Cytosolic serine hydroxymethyltransferase, involved in one-carbon metabolism"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.20237.20237.2	4.2875	0.436	100.0%	1670.2922	1667.8584	1	8.635	73.1%	4	K.ISAVSTYFESFPYR.V	2
*	PARC_hx3_02_itms.15288.15288.2	4.6299	0.4966	100.0%	1708.3722	1707.8749	1	8.546	82.1%	1	R.VNPETGIIDYDTLEK.N	2
*	PARC_hx3_03_itms.14227.14227.2	4.4052	0.2783	100.0%	1573.4321	1573.7893	2	5.502	65.4%	2	K.AVEFAQQVQQSLPK.D	2
*	PARC_hx3_02_itms.14426.14426.2	4.0083	0.463	100.0%	1363.1322	1363.4668	1	8.015	86.4%	1	K.VDEGSDVLNTWK.K	2

YDR229W

11.7%

453

49976

5.0

IVY1 SGDID:S000002637, Chr IV from 924779-926140, Verified ORF, "Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.16574.16574.2	5.9558	0.4562	100.0%	2051.8323	2052.2866	1	9.301	68.4%	4	R.ASSITSGTSTINDLQTLITK.R	2
*	PARC_hx3_02_itms.15290.15290.2	3.2635	0.3405	100.0%	1263.4722	1261.4178	1	5.428	75.0%	1	K.ETQEALSTLLR.N	2
*	PARC_hx3_03_itms.00787.00787.2	4.4272	0.3146	100.0%	2633.2522	2631.8523	1	5.948	52.4%	3	K.YFNDLLGDNLIDDIDEFELQTK.I	2

U	YGR192C	3	5	11.7%	332	35747	7.0	TDH3 SGDID:S000003424, Chr VII from 883815-882817, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "
U	YJR009C	3	5	11.7%	332	35847	7.0	TDH2 SGDID:S000003769, Chr X from 454595-453597, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx3_03_itms.11314.11314.2	3.1687	0.1682	99.3%	1374.7522	1375.5217	9	4.419	57.1%	1	R.TASGNIIPSSTGAAK.A	2
PARC_hx3_02_itms.16676.16676.2	3.5158	0.439	100.0%	1470.7322	1471.7344	1	8.451	73.1%	3	R.VPTVDVSVVDLTVK.L	2
PARC_hx3_04_itms.14717.14717.2	2.9859	0.2917	100.0%	1109.2522	1109.3109	1	5.491	88.9%	1	R.VVDLVEHVAK.A	2

YOR270C

11.5%

840

95529

5.5

VPH1 SGDID:S000005796, Chr XV from 830571-828049, reverse complement, Verified ORF, "Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.17093.17093.2	4.3085	0.3884	100.0%	1669.6122	1668.89	1	7.565	75.0%	2	R.DSAYTLGQLGLVQFR.D	2
*	PARC_hx3_02_itms.17508.17508.2	3.2952	0.2218	99.6%	2401.4922	2402.6196	1	5.003	33.3%	1	K.YLDGSGELYVPPSGSVIDDYVR.N	2
*	PARC_hx3_04_itms.20980.20980.2	3.417	0.285	100.0%	1229.2522	1229.4648	1	5.802	83.3%	2	K.VATLEQILWR.V	2
*	PARC_hx3_02_itms.14679.14679.2	6.1734	0.5774	100.0%	2068.3523	2069.146	1	10.596	69.4%	3	K.IAESLDANLYDVDSSNEGR.S	2
*	PARC_hx3_03_itms.16157.16157.2	3.1466	0.1006	99.2%	1166.2722	1166.3599	1	4.89	88.9%	1	K.NLSDLYTVLK.T	2
*	PARC_hx3_02_itms.17258.17258.2	2.7149	0.0807	97.6%	1396.4521	1396.4991	1	3.317	70.0%	1	K.ELDSWFQDVTR.E	2
*	PARC_hx3_04_itms.20056.20056.2	3.4345	0.3243	100.0%	1167.9122	1168.4246	1	6.6	94.4%	1	K.ILIAEGWIPR.D	2

YNL058C

11.4%

316

35046

7.2

YNL058C SGDID:S000005003, Chr XIV from 516714-515764, reverse complement, Uncharacterized ORF, "Protein of unknown function, localizes to the vacuole; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.19268.19268.2	4.6636	0.362	100.0%	1741.5122	1740.994	1	7.208	71.4%	2	R.SLFISPTLQVSQYEK.S	2
*	PARC_hx3_03_itms.14203.14203.2	5.1681	0.4755	100.0%	2059.4521	2060.2688	1	7.894	67.5%	1	R.NQSSLGLIPVASATSNTSSPK.K	2

U	YGL076C	2	2	11.1%	244	27638	10.1	RPL7A SGDID:S000003044, Chr VII from 365999-365989,365529-365436,364967-364338, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Bp and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"
U	YPL198W	2	2	11.1%	244	27696	10.1	RPL7B SGDID:S000006119, Chr XVI from 173151-173161,173571-173664,174072-174701, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Ap and has similarity to E. coli L30 and rat L7 ribosomal proteins; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_04_itms.17472.17472.2	2.9546	0.254	99.6%	1554.1921	1554.7838	1	5.336	57.1%	1	R.VPLSDNAIIEANLGK.Y	2
	PARC_hx3_04_itms.15108.15108.2	2.7977	0.2793	100.0%	1227.2122	1227.3652	6	5.372	63.6%	1	K.LSNPSGGWGVPR.K	2

YAL038W

10.6%

500

54545

7.7

CDC19 SGDID:S000000036, Chr I from 71787-73289, Verified ORF, "Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.13973.13973.2	3.0385	0.2875	100.0%	1228.6122	1228.391	1	5.064	80.0%	1	K.TNNPETLVALR.K	2
*	PARC_hx3_02_itms.17813.17813.2	3.7348	0.3099	100.0%	1752.6522	1750.0453	1	5.613	50.0%	1	R.GDLGIEIPAPEVLAVQK.K	2
*	PARC_hx3_02_itms.18815.18815.2	2.465	0.1005	95.8%	2526.2322	2523.7378	5	3.314	29.2%	1	R.AEVSDVGNAILDGADCVMLSGETAK.G	2

YDR119W

10.4%

768

85683

8.3

YDR119W SGDID:S000002526, Chr IV from 688222-690528, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.11388.11388.2	2.5337	0.0695	96.3%	1161.4922	1161.2572	2	4.58	70.0%	1	R.TSNQIALGNDK.I	2
*	PARC_hx3_02_itms.14274.14274.2	4.893	0.348	100.0%	1741.4521	1741.9359	1	7.959	73.3%	1	K.IEEINENSPLLSAPSK.Q	2
*	PARC_hx3_04_itms.15987.15987.2	4.4231	0.3593	100.0%	1821.4922	1820.0093	1	6.64	62.5%	1	K.AVDIDTIDAQPLHEGPK.I	2
*	PARC_hx3_03_itms.15643.15643.2	4.4936	0.439	100.0%	2199.152	2198.4346	1	8.794	52.5%	2	K.SLHIVAPSPEVPVSGDEITSY.G	2
*	PARC_hx3_04_itms.13509.13509.2	5.0208	0.5551	100.0%	1681.4321	1681.7588	1	9.979	71.4%	1	K.HATESSDWVHESAPK.F	2

YML123C

10.1%

587

64382

6.4

PHO84 SGDID:S000004592, Chr XIII from 25801-24038, reverse complement, Verified ORF, "High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.16500.16500.2	5.2197	0.3744	100.0%	1935.3322	1936.1284	1	7.115	68.8%	4	R.LALESIDDEGFGWQQVK.T	2
*	PARC_hx3_02_itms.12322.12322.2	4.6432	0.4851	100.0%	1473.5922	1473.5798	1	8.362	88.5%	3	K.LELAAAAQEQDGEK.K	2
*	PARC_hx3_04_itms.10522.10522.2	2.7882	0.3681	100.0%	1087.1921	1087.1777	2	6.322	72.7%	4	R.STAHGISAASGK.V	2
*	PARC_hx3_02_itms.11968.11968.2	5.0511	0.407	100.0%	1756.1921	1756.7802	1	7.728	73.3%	1	K.NNDIESSSPSQLQHEA.-	2

YNL071W

9.8%

482

51818

7.8

LAT1 SGDID:S000005015, Chr XIV from 491524-492972, Verified ORF, "Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex, which catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.16762.16762.2	2.3569	0.1904	98.1%	1700.2922	1700.9725	81	3.888	46.4%	1	K.DIPVNKPIAVYVEDK.A	2
*	PARC_hx3_04_itms.17331.17331.2	4.4995	0.4854	100.0%	1723.9722	1721.9915	1	7.958	66.7%	2	R.LLQSTQGIPSYIVSSK.I	2
*	PARC_hx3_02_itms.16552.16552.2	3.1138	0.3232	100.0%	1870.0322	1872.0905	1	5.865	43.3%	1	R.VPDANAYWLPNENVIR.K	2

contaminant_KERATIN04

9.6%

458

49644

4.9

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.14626.14626.2	3.2141	0.2285	99.6%	2148.5122	2148.2195	19	5.167	34.1%	1	R.LQSSSASYGGGFGGGSCQLGGGR.G	2
	PARC_hx3_04_itms.14098.14098.2	2.8218	0.2574	95.8%	1357.0521	1358.4972	1	5.275	68.2%	1	L.RQSVEADINGLR.R	2 2
	PARC_hx3_02_itms.13180.13180.1	1.4056	0.224	98.3%	1201.61	1202.3097	26	4.205	55.0%	1	R.QSVEADINGLR.R	1 1
	PARC_hx3_02_itms.13168.13168.2	2.9528	0.301	100.0%	1202.1721	1202.3097	1	5.498	80.0%	1	R.QSVEADINGLR.R	2 2
	PARC_hx3_02_itms.12060.12060.1	2.634	0.1928	100.0%	1122.5	1123.2511	1	5.357	75.0%	1	R.LEQEIATYR.S	1 1 1 1 1
	PARC_hx3_02_itms.12054.12054.2	3.732	0.2079	100.0%	1122.6322	1123.2511	1	5.886	93.8%	1	R.LEQEIATYR.S	2 2 2 2 2

U	YBR031W	2	2	9.4%	362	39092	10.6	RPL4A SGDID:S000000235, Chr II from 300166-301254, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins"
U	YDR012W	2	2	9.4%	362	39062	10.6	RPL4B SGDID:S000002419, Chr IV from 471850-472938, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_02_itms.19533.19533.2	2.8909	0.3374	100.0%	1674.2322	1672.9188	2	6.222	46.9%	1	H.SLTGEATANALPLPAVF.S	2
	PARC_hx3_02_itms.19302.19302.2	2.7494	0.1268	97.9%	1884.0322	1882.2047	1	4.068	50.0%	1	K.IPEIPLVVSTDLESIQK.T	2

YDR089W

9.3%

869

98712

5.5

YDR089W SGDID:S000002496, Chr IV from 622107-624716, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.16678.16678.2	3.8689	0.3546	100.0%	1437.5922	1438.661	1	7.255	75.0%	2	R.ILSVESSIIDFSK.G	2
*	PARC_hx3_02_itms.18050.18050.2	4.9685	0.4841	100.0%	2623.7922	2624.864	1	9.087	50.0%	1	K.LLNEFPQDSENPLTASEYVTSIR.N	2
*	PARC_hx3_02_itms.16593.16593.2	3.3856	0.1143	99.3%	1351.1721	1351.5396	1	4.201	81.8%	1	R.FLLSSEDIEGLK.F	2
*	PARC_hx3_03_itms.17234.17234.2	4.5462	0.3319	100.0%	1669.4521	1669.9158	1	7.249	70.0%	4	K.NISALINSLDPSPISK.I	2
*	PARC_hx3_03_itms.17081.17081.2	3.9667	0.3572	100.0%	1912.3922	1913.0477	1	5.87	59.4%	2	K.LNSDDSLSPDEFFQLGK.D	2

YLR342W

9.0%

1876

214849

7.2

FKS1 SGDID:S000004334, Chr XII from 809997-815627, Verified ORF, "Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic subunit Gsc2p; binds to regulatory subunit Rho1p; involved in cell wall synthesis and maintenance; localizes to sites of cell wall remodeling"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_02_itms.13396.13396.2	2.9785	0.2677	96.2%	1436.9122	1437.5059	1	4.925	66.7%	1	K.IEGDNSLEAADFR.W	2
	PARC_hx3_03_itms.13877.13877.2	3.5884	0.1715	96.2%	1346.3722	1346.4949	1	5.409	80.0%	1	Y.LLCWGEANQVR.F	2
*	PARC_hx3_02_itms.15890.15890.2	3.4519	0.3102	100.0%	1738.8922	1739.8549	1	6.418	69.2%	1	K.CALDYLDSPLCQQR.Q	2
*	PARC_hx3_03_itms.18605.18605.2	2.7604	0.3062	100.0%	1440.4922	1440.6384	1	5.873	77.3%	1	R.LGDVVWDDVFFK.T	2
	PARC_hx3_03_itms.18168.18168.2	4.7126	0.4218	100.0%	2409.9722	2409.5732	1	8.168	60.5%	3	R.APTFFVSQDDNNFETEFFPR.D	2
*	PARC_hx3_02_itms.17843.17843.2	5.3676	0.4753	100.0%	2646.172	2646.867	1	8.725	54.5%	1	R.AYPDLQIAYLDEEPPLTEGEEPR.I	2
	PARC_hx3_02_itms.13979.13979.2	3.3706	0.4049	100.0%	1298.4321	1298.4819	1	6.841	75.0%	1	R.VQLSGNPILGDGK.S	2
	PARC_hx3_02_itms.17776.17776.2	3.847	0.3821	100.0%	2429.7122	2429.6086	1	6.441	44.7%	2	R.GEYIQLIDANQDNYLEECLK.I	2
*	PARC_hx3_04_itms.13828.13828.2	4.3603	0.418	100.0%	1785.4521	1785.9542	1	8.025	63.3%	1	R.YEEQTTNHPVAIVGAR.E	2
	PARC_hx3_03_itms.15670.15670.2	4.1117	0.1619	100.0%	1857.0122	1857.027	2	6.875	55.9%	2	R.EYIFSENSGVLGDVAAGK.E	2
	PARC_hx3_04_itms.16534.16534.2	2.3518	0.2274	99.5%	995.0522	995.1258	41	4.385	71.4%	1	R.NSWIGYVR.M	2

YCL043C

9.0%

522

58227

4.5

PDI1 SGDID:S000000548, Chr III from 50221-48653, reverse complement, Verified ORF, "Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen, essential for the formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.15892.15892.2	4.051	0.1875	100.0%	1524.4122	1522.8058	2	3.873	70.8%	1	L.FTELAKKNRGLMN.F	2
*	PARC_hx3_02_itms.18692.18692.2	3.9573	0.3279	100.0%	1942.7522	1942.0863	1	6.653	59.4%	1	K.YGLPQLSEEAFDELSDK.I	2
*	PARC_hx3_03_itms.16663.16663.2	2.5506	0.1991	98.6%	1764.9321	1763.0868	1	5.124	50.0%	1	R.GVVIEGYPTIVLYPGGK.K	2

contaminant_SPA1_STAAU

9.0%

524

57320

5.7

owl|P02976| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_04_itms.18221.18221.2	2.676	0.3405	100.0%	1562.9722	1563.6665	1	6.176	66.7%	1	Q.HDEAQQNAFYQVL.N	2
*	PARC_hx3_03_itms.17986.17986.3	3.7787	0.205	100.0%	2383.9443	2382.6099	61	4.574	30.3%	1	K.DQQSAFYEILNMPNLNEAQR.N	3
*	PARC_hx3_02_itms.15160.15160.2	3.4146	0.3106	100.0%	1542.3722	1542.7502	1	5.806	79.2%	2	Y.EILNMPNLNEAQR.N	2
	PARC_hx3_02_itms.11884.11884.2	3.6427	0.3892	100.0%	1461.4521	1461.5254	1	6.409	76.9%	1	K.DDPSQSTNVLGEAK.K	2

YGR193C

9.0%

410

45362

5.7

PDX1 SGDID:S000003425, Chr VII from 885746-884514, reverse complement, Verified ORF, "Dihydrolipoamide dehydrogenase (E3)-binding protein (E3BP) of the mitochondrial pyruvate dehydrogenase (PDH) complex, plays a structural role in the complex by binding and positioning E3 to the dihydrolipoamide acetyltransferase (E2) core"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.20017.20017.2	3.1983	0.3583	100.0%	2347.2522	2348.566	2	6.037	33.3%	1	K.DVDVGEPIAYIADVDDDLATIK.L	2
*	PARC_hx3_03_itms.20963.20963.2	2.8701	0.3358	100.0%	1814.0922	1813.0599	1	6.042	64.3%	1	K.YFDPIFEDLVTLSPR.E	2

YNL217W

8.9%

326

37151

8.3

YNL217W SGDID:S000005161, Chr XIV from 240332-241312, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.21394.21394.2	2.6892	0.281	99.6%	1566.4922	1566.9219	1	5.323	53.6%	1	R.LSPPVSLLPTISTLK.K	2
*	PARC_hx3_04_itms.16754.16754.2	3.4652	0.2863	100.0%	1731.0922	1731.8658	3	5.31	53.8%	1	K.KGQYDYELIQVQCS.-	2

YDR452W

8.5%

674

78344

6.9

PPN1 SGDID:S000002860, Chr IV from 1362868-1364892, Verified ORF, "Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.13708.13708.2	2.0615	0.3559	95.6%	957.4122	957.11786	5	5.968	75.0%	1	F.ALGPTLQTR.E	2
*	PARC_hx3_03_itms.15596.15596.2	3.7396	0.4314	100.0%	1249.2322	1249.4497	1	6.811	72.7%	1	R.SASFLTEVIPGK.L	2
*	PARC_hx3_04_itms.20931.20931.2	3.6222	0.3219	100.0%	1852.1921	1853.1277	1	5.765	56.7%	1	K.YELGPAYVPQLFTPTR.F	2
*	PARC_hx3_04_itms.18070.18070.2	3.2868	0.3025	100.0%	1260.1721	1260.432	1	5.522	88.9%	2	R.FVQFYADLEK.I	2
*	PARC_hx3_04_itms.13768.13768.2	2.7246	0.073	97.8%	1278.5721	1278.4503	1	3.443	83.3%	1	R.LYENKPAWEK.Y	2

U	YDL229W	3	5	8.2%	613	66602	5.4	SSB1 SGDID:S000002388, Chr IV from 44066-45907, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; interacts with the phosphatase subunit Reg1p"
U	YNL209W	3	5	8.2%	613	66595	5.5	SSB2 SGDID:S000005153, Chr XIV from 252060-253901, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; homolog of SSB1"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx3_02_itms.15362.15362.2	3.5405	0.2457	100.0%	1186.2922	1186.3536	1	5.065	90.9%	1	K.DAGAISGLNVLR.I	2
PARC_hx3_04_itms.18957.18957.2	4.6113	0.4599	100.0%	1731.4922	1731.0018	1	8.928	64.7%	1	R.IINEPTAAAIAYGLGAGK.S	2
PARC_hx3_02_itms.18244.18244.2	5.0841	0.541	100.0%	2166.1921	2167.418	1	10.292	63.2%	3	R.LESYVASIEQTVTDPVLSSK.L	2

YIL117C

7.9%

318

34651

7.1

PRM5 SGDID:S000001379, Chr IX from 141566-140610, reverse complement, Verified ORF, "Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrity signaling"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.17115.17115.2	3.2501	0.3328	100.0%	1221.3722	1221.3556	1	6.029	80.0%	1	R.PLFSLASESNR.N	2
*	PARC_hx3_04_itms.19638.19638.2	3.8391	0.2936	100.0%	1568.3922	1568.81	1	5.265	80.8%	2	R.NSLFISPTGDILYK.T	2

YLR197W

7.7%

504

56864

8.9

SIK1 SGDID:S000004187, Chr XII from 546099-547613, Verified ORF, "Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.20067.20067.2	2.2231	0.2133	98.1%	2217.7722	2218.3794	1	4.741	35.7%	1	K.GAAEALENANDISEGLVSESLK.A	2
*	PARC_hx3_02_itms.16683.16683.2	3.3326	0.2575	100.0%	1900.5521	1899.0642	1	5.698	50.0%	1	R.IDNYSEEPSNVFGSVLK.K	2

contaminant_INT-STD1

7.4%

607

69271

6.1

BSA

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.17225.17225.2	2.9296	0.2497	99.6%	1956.0322	1957.1443	1	5.341	64.7%	1	K.DAIPENLPPLTADFAEDK.D	2
*	PARC_hx3_03_itms.15813.15813.2	4.3361	0.4297	100.0%	1480.4122	1480.7068	1	8.274	75.0%	2	K.LGEYGFQNALIVR.Y	2
*	PARC_hx3_04_itms.16320.16320.2	2.7795	0.2552	97.6%	1017.9322	1018.204	4	5.005	81.2%	1	Y.GFQNALIVR.Y	2
*	PARC_hx3_03_itms.13663.13663.2	2.8212	0.3485	100.0%	1512.4321	1512.7465	1	5.514	61.5%	1	K.VPQVSTPTLVEVSR.S	2

YLL029W

7.3%

749

84924

6.9

YLL029W SGDID:S000003952, Chr XII from 81460-83709, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.16421.16421.2	3.0113	0.0503	97.4%	1500.6522	1500.5645	7	4.373	58.3%	1	R.DLLNFNDDHPDGK.S	2
*	PARC_hx3_02_itms.16671.16671.2	2.8399	0.1815	99.2%	1860.4122	1861.9745	1	5.199	53.8%	1	R.QNEDPITWQEWCVR.E	2
*	PARC_hx3_04_itms.20045.20045.2	3.6657	0.2876	100.0%	1347.5122	1347.5596	1	6.59	85.0%	1	Y.FAWLEQQLVGR.E	2
*	PARC_hx3_04_itms.21212.21212.2	4.1313	0.4177	100.0%	1887.3722	1889.1613	1	6.87	65.6%	4	R.LIFPENTPGFNIDAIAR.Q	2

YDL077C

7.2%

1049

122881

7.1

VAM6 SGDID:S000002235, Chr IV from 320120-316971, reverse complement, Verified ORF, "Vacuolar protein that plays a critical role in the tethering steps of vacuolar membrane fusion by facilitating guanine nucleotide exchange on small guanosine triphosphatase Ypt7p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.14663.14663.2	3.1123	0.2802	100.0%	1619.2722	1618.7814	3	4.72	57.1%	1	K.SSDITAILPTEQSQK.L	2
*	PARC_hx3_04_itms.19992.19992.2	3.7805	0.2492	100.0%	1551.0122	1549.81	1	5.139	79.2%	2	K.LFQVYPDLLQNAK.N	2
*	PARC_hx3_02_itms.17403.17403.2	3.495	0.2621	100.0%	1739.2122	1736.9213	1	6.425	65.4%	2	K.FVDYENGFTFLQQK.I	2
*	PARC_hx3_02_itms.14432.14432.2	2.4147	0.2822	99.6%	1398.0521	1395.5522	1	4.95	63.6%	1	K.SLLETTSVYEPR.T	2
*	PARC_hx3_02_itms.16942.16942.2	6.4163	0.5046	100.0%	2417.652	2417.6782	1	8.584	61.9%	1	K.LLNDAIESGSDQLPTNQLNFVK.Y	2

contaminant_KERATIN15

7.2%

629

64511

6.5

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_02_itms.12962.12962.2	4.6907	0.1167	100.0%	1479.6122	1477.7007	1	5.544	90.9%	4	R.FLEQQNKVLETK.W	2 2 2
*	PARC_hx3_02_itms.18794.18794.1	3.0084	0.243	100.0%	1303.59	1303.4521	12	5.793	54.2%	1	R.SLDLDSIIAEVGA.Q	1
*	PARC_hx3_04_itms.21502.21502.2	5.3556	0.3228	100.0%	1306.4122	1303.4521	1	6.55	79.2%	7	R.SLDLDSIIAEVGA.Q	2
	PARC_hx3_02_itms.13863.13863.1	2.9816	0.2629	100.0%	1139.48	1140.2965	1	5.927	75.0%	1	R.DYQELMNVK.L	1 1 1
	PARC_hx3_02_itms.13858.13858.2	3.1432	0.292	100.0%	1140.2722	1140.2965	2	6.005	87.5%	1	R.DYQELMNVK.L	2 2 2
	PARC_hx3_02_itms.16499.16499.2	2.4911	0.2679	99.6%	1264.6122	1264.4644	1	5.244	80.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2

contaminant_TRYPSIN

7.0%

229

23993

7.9

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.18046.18046.2	4.3625	0.4446	100.0%	1685.2922	1686.8309	1	7.525	66.7%	1	F.CGGSLINSQWVVSAAH.C	2
*	PARC_hx3_04_itms.17955.17955.2	3.7411	0.2621	100.0%	1526.4122	1526.6921	1	6.477	64.3%	2	C.GGSLINSQWVVSAAH.C	2
*	PARC_hx3_04_itms.18051.18051.2	4.8906	0.455	100.0%	1468.7722	1469.6401	1	7.799	73.1%	4	G.GSLINSQWVVSAAH.C	2
*	PARC_hx3_04_itms.18099.18099.2	3.7182	0.3854	100.0%	1412.6322	1412.5883	1	7.39	70.8%	1	G.SLINSQWVVSAAH.C	2
*	PARC_hx3_04_itms.16784.16784.2	4.075	0.3765	100.0%	1324.7722	1325.51	1	6.987	86.4%	3	S.LINSQWVVSAAH.C	2
*	PARC_hx3_03_itms.12906.12906.2	4.1411	0.3461	100.0%	1212.2922	1212.3506	1	6.772	90.0%	1	L.INSQWVVSAAH.C	2
*	PARC_hx3_03_itms.11955.11955.2	2.8024	0.3383	100.0%	984.77216	985.08734	1	6.407	93.8%	1	N.SQWVVSAAH.C	2

YHR028C

6.5%

818

93404

5.5

DAP2 SGDID:S000001070, Chr VIII from 167427-164971, reverse complement, Verified ORF, "Dipeptidyl aminopeptidase, synthesized as a glycosylated precursor; localizes to the vacuolar membrane; similar to Ste13p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.15116.15116.2	3.4324	0.3539	100.0%	1689.6122	1689.8163	1	5.851	64.3%	1	K.SVYDDSYNSVLLEGK.T	2
*	PARC_hx3_04_itms.16844.16844.2	2.3134	0.1162	98.1%	900.09216	900.06537	1	4.244	91.7%	1	R.LYFISTR.K	2
*	PARC_hx3_03_itms.17336.17336.2	2.4297	0.0811	95.0%	2040.7722	2041.2653	1	3.881	47.2%	1	R.DQISAASLYGSLTFVDPQK.I	2
*	PARC_hx3_03_itms.14879.14879.2	2.8808	0.2761	100.0%	1382.3322	1382.5768	1	5.686	72.7%	1	K.YGMSVAPVTDWR.F	2

YLR220W

6.5%

322

34250

5.1

CCC1 SGDID:S000004210, Chr XII from 576827-577795, Verified ORF, "Putative vacuolar Fe2+/Mn2+ transporter; suppresses respiratory deficit of yfh1 mutants, which lack the ortholog of mammalian frataxin, by preventing mitochondrial iron accumulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.12867.12867.2	2.6857	0.1041	98.5%	986.0122	986.19977	2	6.196	87.5%	1	K.NAVVTLIQK.A	2
*	PARC_hx3_04_itms.18660.18660.2	3.1807	0.3535	100.0%	1351.1122	1351.5046	1	5.712	77.3%	2	K.ANLGFFQSVDPR.V	2

YHR174W

6.4%

437

46914

6.0

ENO2 SGDID:S000001217, Chr VIII from 451327-452640, Verified ORF, "Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_04_itms.13540.13540.2	3.3977	0.2866	100.0%	1160.3121	1160.3152	3	5.417	77.8%	1	R.IGSEVYHNLK.S	2
*	PARC_hx3_03_itms.15659.15659.2	4.0936	0.4598	100.0%	1853.5122	1856.0862	1	8.384	64.7%	5	K.TAGIQIVADDLTVTNPAR.I	2

contaminant_KERATIN14

6.3%

638

65871

8.1

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx3_02_itms.12962.12962.2	4.6907	0.1167	100.0%	1479.6122	1477.7007	1	5.544	90.9%	4	R.FLEQQNKVLETK.W	2 2 2
PARC_hx3_02_itms.13863.13863.1	2.9816	0.2629	100.0%	1139.48	1140.2965	1	5.927	75.0%	1	R.DYQELMNVK.L	1 1 1
PARC_hx3_02_itms.13858.13858.2	3.1432	0.292	100.0%	1140.2722	1140.2965	2	6.005	87.5%	1	R.DYQELMNVK.L	2 2 2
PARC_hx3_02_itms.16499.16499.2	2.4911	0.2679	99.6%	1264.6122	1264.4644	1	5.244	80.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2
PARC_hx3_02_itms.10497.10497.2	2.5921	0.1503	99.2%	1006.0522	1006.0667	2	4.792	92.9%	2	K.LLEGEECR.M	2 2 2 2 2

YLR396C

5.5%

691

79271

5.3

VPS33 SGDID:S000004388, Chr XII from 912310-910235, reverse complement, Verified ORF, "ATP-binding protein that is a subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; essential for membrane docking and fusion at both the Golgi-to-endosome and endosome-to-vacuole stages of protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.16537.16537.2	4.2592	0.3414	100.0%	1708.2522	1706.9365	1	7.587	64.3%	1	N.SLLTFQDLTQSTPVR.K	2
*	PARC_hx3_02_itms.14744.14744.2	2.5874	0.1434	98.5%	1379.3121	1379.5126	12	3.901	68.2%	1	K.EFVDSLGSLQQR.Q	2
*	PARC_hx3_04_itms.13754.13754.2	2.3268	0.1254	97.3%	1215.3522	1215.3489	12	4.245	60.0%	1	K.NHTTLSSDVLK.V	2

YJL172W

5.4%

576

64597

5.5

CPS1 SGDID:S000003708, Chr X from 97731-99461, Verified ORF, "Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.22803.22803.2	5.2685	0.3749	100.0%	2319.0322	2319.4988	1	7.818	62.5%	1	R.YGDDGIYSIIDEGEGIMEVDK.D	2
*	PARC_hx3_04_itms.17261.17261.2	2.5789	0.2043	99.5%	1131.6322	1132.3141	1	4.161	83.3%	1	K.TILGAPFCPR.R	2

YLR148W

5.3%

918

107398

7.0

PEP3 SGDID:S000004138, Chr XII from 434642-437398, Verified ORF, "Vacuolar peripheral membrane protein that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis, forms complex with Pep5p that mediates protein transport to the vacuole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.17285.17285.2	3.4629	0.2197	100.0%	1706.1322	1706.8926	1	5.266	61.5%	1	K.FPLVLPDESEQFER.L	2
*	PARC_hx3_04_itms.18760.18760.2	3.0154	0.2211	100.0%	951.27216	951.15393	1	4.445	92.9%	1	K.TSIFLLTR.L	2
*	PARC_hx3_02_itms.16004.16004.2	3.1637	0.3079	100.0%	1473.8522	1474.6946	1	6.015	66.7%	1	R.TILNDSNEILTIK.D	2
*	PARC_hx3_02_itms.14625.14625.2	3.0889	0.1367	98.7%	1571.4722	1572.7527	1	4.639	61.5%	1	K.IDQPISIDETELAK.W	2

YOR291W

5.1%

1472

166749

6.1

YOR291W SGDID:S000005817, Chr XV from 861172-865590, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.11243.11243.2	2.5079	0.3308	100.0%	953.5722	954.07086	1	5.952	87.5%	1	R.IYGTGLSSR.R	2
*	PARC_hx3_04_itms.17673.17673.2	3.7187	0.4873	100.0%	1399.0721	1398.7069	1	7.858	76.9%	1	R.IAPGQTAALAMVVR.T	2
*	PARC_hx3_02_itms.17342.17342.2	2.5703	0.3398	100.0%	1488.4922	1490.6531	1	6.068	57.7%	1	R.SVDGNLLGDPLDFK.M	2
*	PARC_hx3_04_itms.18048.18048.2	3.0098	0.1682	99.2%	1975.1522	1976.1124	5	4.704	43.8%	1	R.ENTFTDNDPHNFLGVVR.S	2
*	PARC_hx3_03_itms.16911.16911.2	3.6914	0.2155	100.0%	1127.7122	1128.27	1	5.856	87.5%	1	R.SFEFLSELR.R	2
*	PARC_hx3_02_itms.16976.16976.2	2.2463	0.2613	99.2%	1378.1921	1377.537	1	5.184	68.2%	1	K.STLPADFEEVLR.C	2

YDR135C

4.8%

1515

171120

8.4

YCF1 SGDID:S000002542, Chr IV from 727546-722999, reverse complement, Verified ORF, "Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.18110.18110.2	2.8972	0.1966	99.6%	1108.3121	1108.3231	3	5.636	72.2%	1	K.SALTALIYQK.S	2
*	PARC_hx3_03_itms.17378.17378.2	4.3517	0.3207	100.0%	2071.3523	2072.2817	1	6.928	62.5%	2	R.LFTFFTNEELQPDSVQR.L	2
*	PARC_hx3_03_itms.16116.16116.2	3.8635	0.4818	100.0%	1468.1322	1468.7106	1	8.209	70.8%	2	R.APMTFFETTPIGR.I	2
*	PARC_hx3_04_itms.18922.18922.2	3.4685	0.3762	100.0%	1789.5922	1790.0262	1	6.288	60.0%	2	K.LSIIPQDSQVFEGTVR.E	2
*	PARC_hx3_02_itms.16990.16990.2	4.3507	0.4094	100.0%	1977.5922	1978.1252	1	8.089	66.7%	1	R.ENIDPINQYTDEAIWR.A	2

U	YBR118W	2	3	4.1%	458	50033	9.0	TEF2 SGDID:S000000322, Chr II from 477665-479041, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"
U	YPR080W	2	3	4.1%	458	50033	9.0	TEF1 SGDID:S000006284, Chr XVI from 700592-701968, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx3_03_itms.13004.13004.2	2.7932	0.1948	99.6%	976.5722	976.1607	1	4.366	92.9%	1	R.LPLQDVYK.I	2
	PARC_hx3_04_itms.14847.14847.2	3.3216	0.2381	100.0%	1025.6921	1026.2241	1	5.503	90.0%	2	K.IGGIGTVPVGR.V	2

contaminant_KERATIN16

3.9%

534

57265

6.6

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx3_02_itms.12962.12962.2	4.6907	0.1167	100.0%	1479.6122	1477.7007	1	5.544	90.9%	4	Q.FLEQQNKVLETK.W	2 2 2
PARC_hx3_02_itms.11271.11271.1	1.9795	0.195	97.7%	1107.64	1108.196	3	5.035	68.8%	1	R.AQYEEIAQR.S	1 1 1 1
PARC_hx3_02_itms.11249.11249.2	3.1946	0.337	100.0%	1108.3121	1108.196	1	5.625	87.5%	2	R.AQYEEIAQR.S	2 2 2 2

YNL268W

3.8%

611

68090

7.0

LYP1 SGDID:S000005212, Chr XIV from 138551-140386, Verified ORF, "Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of cationic amino acids"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.11960.11960.2	2.0171	0.1435	96.7%	1023.2322	1024.1619	1	3.376	87.5%	1	R.FSNIITSNK.W	2
	PARC_hx3_04_itms.16497.16497.2	3.219	0.4482	100.0%	1400.0721	1399.5461	1	7.84	69.2%	1	R.NPGAWGPGIISSDK.S	2

YNR013C

3.6%

894

99490

8.0

PHO91 SGDID:S000005296, Chr XIV from 651714-649030, reverse complement, Verified ORF, "Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.13296.13296.2	2.9603	0.1298	99.2%	1133.2522	1133.3329	1	4.297	88.9%	1	K.FVAALNQELK.K	2
*	PARC_hx3_04_itms.20477.20477.2	2.5265	0.0607	95.6%	1410.7722	1408.6781	3	3.156	72.7%	1	R.LISIYTQLSELK.D	2
*	PARC_hx3_04_itms.18506.18506.2	2.8137	0.4122	100.0%	1170.3522	1171.3818	1	6.266	94.4%	1	R.YLTVGTFITR.G	2

YMR246W

3.6%

694

77267

6.6

FAA4 SGDID:S000004860, Chr XIII from 759806-761890, Verified ORF, "Long chain fatty acyl-CoA synthetase, regulates protein modification during growth in the presence of ethanol, functions to incorporate palmitic acid into phospholipids and neutral lipids"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.14854.14854.2	2.7715	0.2697	99.6%	1512.6921	1511.6744	1	4.795	75.0%	1	K.FVIHNEPIDPSDK.R	2
*	PARC_hx3_04_itms.16318.16318.2	3.3554	0.3088	100.0%	1325.4722	1326.5358	1	6.022	72.7%	1	R.DILAAVKPDVER.V	2

YDR080W

3.5%

992

113412

4.9

VPS41 SGDID:S000002487, Chr IV from 604004-606982, Verified ORF, "Vacuolar membrane protein that is a subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; essential for membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.19271.19271.2	3.0737	0.2352	100.0%	1272.4321	1272.4899	1	4.969	80.0%	1	R.SQLLNIPFPSR.I	2
*	PARC_hx3_02_itms.19406.19406.2	3.9272	0.398	100.0%	1746.6721	1743.8645	1	7.113	69.2%	2	K.LFSVEDFEEELETR.I	2
*	PARC_hx3_03_itms.14928.14928.2	3.0067	0.2724	100.0%	1145.2722	1145.344	1	5.047	83.3%	1	K.NPQLAIDFVK.N	2

YPL045W

3.5%

798

92741

7.1

VPS16 SGDID:S000005966, Chr XVI from 467257-469653, Verified ORF, "Subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; part of the Class C Vps complex essential for membrane docking and fusion at both the Golgi-to-endosome and endosome-to-vacuole stages of protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.13836.13836.1	1.8731	0.0897	97.2%	1052.05	1051.1033	3	4.087	64.3%	1	K.NPSFDWER.L	1
*	PARC_hx3_03_itms.12220.12220.2	2.3731	0.242	99.5%	1190.1322	1190.3445	56	5.564	61.1%	1	R.VQPQTSNIFR.I	2
*	PARC_hx3_03_itms.15201.15201.2	3.2835	0.3144	100.0%	1237.3722	1237.441	3	5.617	88.9%	1	K.LWIYQESLGK.R	2

YER001W

3.5%

762

88529

7.2

MNN1 SGDID:S000000803, Chr V from 153519-155807, Verified ORF, "Alpha-1,3-mannosyltransferase, integral membrane glycoprotein of the Golgi complex, required for addition of alpha1,3-mannose linkages to N-linked and O-linked oligosaccharides, one of five S. cerevisiae proteins of the MNN1 family"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.15522.15522.2	4.2889	0.331	100.0%	1536.5721	1536.771	1	7.732	79.2%	1	R.FEGNTLPIQVVYR.G	2
*	PARC_hx3_04_itms.15112.15112.2	4.9388	0.3496	100.0%	1642.4722	1642.7631	1	8.298	84.6%	1	R.TTHGELITLDEEQR.L	2

contaminant_NRL_1MCOH

3.5%

428

46852

8.9

owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H...

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.12304.12304.1	2.0477	0.0813	97.1%	835.53	835.994	25	3.397	75.0%	1	K.DTLMISR.T	1
*	PARC_hx3_03_itms.11446.11446.1	1.8124	0.1268	97.0%	838.51	839.02264	1	4.653	78.6%	1	K.ALPAPIEK.T	1

YMR231W

3.0%

1029

117477

5.8

PEP5 SGDID:S000004844, Chr XIII from 733544-736633, Verified ORF, "Peripheral vacuolar membrane protein required for protein trafficking and vacuole biogenesis; forms complex with Pep3p that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, also interacts with Pep7p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.13991.13991.2	3.1451	0.2096	99.8%	1373.8922	1374.5364	1	4.781	80.0%	1	R.EQLYHSQVELK.N	2
*	PARC_hx3_04_itms.17842.17842.2	3.2828	0.294	100.0%	1035.0122	1035.2314	1	4.667	93.8%	1	R.ILLFNTTGR.N	2
*	PARC_hx3_04_itms.14022.14022.2	3.7588	0.312	100.0%	1328.7322	1329.4955	1	6.144	80.0%	1	K.LFEAQHEVVEK.N	2

YPL019C

2.9%

835

96553

7.4

VTC3 SGDID:S000005940, Chr XVI from 517016-514509, reverse complement, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.17242.17242.2	3.6267	0.3671	100.0%	1610.7122	1611.7484	1	5.987	66.7%	1	R.DFDNIQNFIVEEK.L	2
*	PARC_hx3_03_itms.13013.13013.2	2.1927	0.144	97.1%	1203.4122	1203.3378	122	3.968	55.0%	1	K.ISVPDGKTTER.Q	2

YLR241W

2.8%

782

89344

8.1

YLR241W SGDID:S000004231, Chr XII from 620475-622823, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.14844.14844.2	3.2267	0.3059	100.0%	998.1122	998.21075	2	5.462	93.8%	1	R.LSGIPIELR.D	2
*	PARC_hx3_04_itms.21720.21720.2	2.6524	0.1112	97.6%	1579.5922	1578.7594	2	3.383	58.3%	2	K.EVDAIEYLEQQLK.F	2

YJL198W

2.7%

881

97689

7.1

PHO90 SGDID:S000003734, Chr X from 60843-63488, Verified ORF, "Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.15965.15965.2	3.4213	0.1087	99.5%	1371.4122	1371.5298	1	4.383	80.0%	1	R.TELIESEQFFK.D	2
*	PARC_hx3_03_itms.14218.14218.2	3.3288	0.3889	100.0%	1234.3121	1234.4355	1	6.564	79.2%	1	K.AVSSSGLLSTIAK.A	2

YGL006W

2.0%

1173

130861

7.4

PMC1 SGDID:S000002974, Chr VII from 485925-489446, Verified ORF, "Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_03_itms.14913.14913.2	3.463	0.2831	100.0%	1434.1921	1434.5919	1	5.533	79.2%	1	K.NAGISLPEISNYR.K	2
*	PARC_hx3_03_itms.13070.13070.2	2.6789	0.1929	99.3%	1262.9321	1263.4362	3	4.341	65.0%	1	K.VVQTIPFESSR.K	2

YBL017C

1.9%

1579

177777

4.9

PEP1 SGDID:S000000113, Chr II from 191586-186847, reverse complement, Verified ORF, "Type I transmembrane sorting receptor for multiple vacuolar hydrolases; cycles between the late-Golgi and prevacuolar endosome-like compartments"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.15544.15544.2	3.0161	0.1722	99.2%	1959.3722	1957.9679	1	4.067	60.0%	1	K.TCEENDFEDWNLAEGK.C	2
*	PARC_hx3_02_itms.17477.17477.2	4.1637	0.4085	100.0%	1716.4122	1715.8634	1	6.945	80.8%	1	K.VFEDLQLFETACDK.C	2

YLL048C

1.8%

1661

189161

8.1

YBT1 SGDID:S000003971, Chr XII from 46264-41279, reverse complement, Verified ORF, "Transporter of the ATP-binding cassette (ABC) family involved in bile acid transport; similar to mammalian bile transporters"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.19032.19032.2	4.3683	0.2842	100.0%	1536.3121	1536.6873	2	5.828	70.8%	2	K.NNILFNSPFNEAR.Y	2
*	PARC_hx3_03_itms.17171.17171.2	3.1352	0.2312	99.6%	1832.6122	1832.1473	1	4.916	59.4%	2	R.SITIIPQDPTLFSGTIK.T	2

YKL064W

1.5%

969

109736

7.5

MNR2 SGDID:S000001547, Chr XI from 317408-320317, Verified ORF, "Putative magnesium transporter; has similarity to Alr1p and Alr2p, which mediate influx of Mg2+ and other divalent cations"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_04_itms.18208.18208.2	3.5082	0.0079	97.0%	1657.4321	1656.8826	71	3.044	53.6%	1	K.SRIQSGLQDNLLVGR.N	2
*	PARC_hx3_02_itms.14680.14680.2	3.5354	0.3279	100.0%	1414.2122	1413.617	1	6.397	75.0%	1	R.IQSGLQDNLLVGR.N	2

Reverse_YPL084W

1.3%

844

97276

5.4

BRO1 SGDID:S000006005, Chr XVI from 394035-396569, Verified ORF, "Cytoplasmic class E vacuolar protein sorting (VPS) factor that coordinates deubiquitination in the multivesicular body (MVB) pathway by recruiting Doa4p to endosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx3_02_itms.15976.15976.2	3.3261	0.1638	99.6%	1205.9722	1205.2236	1	4.325	83.3%	2	K.TIDDNNIEDR.L	2
*	PARC_hx3_04_itms.21533.21533.2	3.0841	0.2279	95.5%	1317.5721	1318.383	2	4.468	75.0%	1	K.TIDDNNIEDRL.E	2

	Proteins	Peptide IDs	Spectra
Unfiltered	10674	56775	61162
Filtered	81	480	902
Forward matches	80	478	899
Decoy matches	1	2	3
Forward FP rate	1.25%	0.42%	0.33%

/data/6/jamest/xu/aug07/hx3/parc