D bob1

DTASelect v1.9
/data/2/shabadu/october2005/kellogg/bob1
/scratch/yates/yrcdb/cerv4932.FASTAC
SEQUEST 2.7 in SQT format.

Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
1.8	Minimum +1 XCorr
2.5	Minimum +2 XCorr
3.5	Minimum +3 XCorr
4.5	Minimum +4 XCorr
0.08	Minimum DeltCN
1	Minimum charge state
4	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

HS26_YEAST

66.7%

213

23748

5.5

(P15992) Heat shock protein 26 (26 kDa heat shock protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.03922.03922.2	5.2459	0.4671	2221.47	2222.378	1	2754.4	73.5%	1	S.PFFDFFDNINNEVDAFNR.L	2
*	bob1-02.01164.01164.2	3.0293	0.212	1142.43	1140.241	2	1248.1	77.8%	1	N.NYAGALYDPR.D	2
*	bob1-03.03591.03591.2	4.727	0.494	2689.55	2691.869	1	851.9	47.7%	15	R.DETLDDWFDNDLSLFPSGFGFPR.S	2
*	bob1-04.01842.01842.2	5.158	0.3086	2045.09	2042.253	1	1407.2	67.6%	11	R.SVAVPVDILDHDNNYELK.V	2
*	bob1-04.01784.01784.2	3.6678	0.3714	1855.81	1856.042	1	784.7	60.0%	2	V.AVPVDILDHDNNYELK.V	2
*	bob1-04.01786.01786.2	4.905	0.3701	1685.49	1685.831	1	2385.1	84.6%	2	V.PVDILDHDNNYELK.V	2
*	bob1-03.00991.00991.2	3.5942	0.2319	1275.47	1275.36	1	1259.3	83.3%	1	K.DIDIEYHQNK.N	2
*	bob1-02.01510.01510.2	5.5469	0.4349	1959.35	1959.161	1	1485.9	79.4%	1	K.NQILVSGEIPSTLNEESK.D	2
*	bob1-04.01314.01314.2	4.5812	0.4236	2201.27	2202.423	1	629.2	52.6%	2	K.NQILVSGEIPSTLNEESKDK.V	2
*	bob1-03.01368.01368.1	2.6587	0.1215	1247.5	1248.332	2	552.7	60.0%	1	I.PSTLNEESKDK.V	1
*	bob1-04.01451.01451.2	2.9317	0.2326	1886.75	1887.143	1	628.2	56.2%	1	K.RVITLPDYPGVDADNIK.A	2
*	bob1-02.01822.01822.2	3.9206	0.4097	1729.87	1730.956	1	838.7	76.7%	3	R.VITLPDYPGVDADNIK.A	2
*	bob1-02.01800.01800.1	3.0564	0.3732	1304.45	1304.399	1	453.6	59.1%	1	L.PDYPGVDADNIK.A	1
*	bob1-02.01775.01775.2	5.0767	0.4044	1462.15	1462.686	1	1800.6	76.9%	4	K.ADYANGVLTLTVPK.L	2
*	bob1-04.00974.00974.2	4.1356	0.4639	1364.23	1364.455	1	1556.5	77.3%	3	K.KIEVSSQESWGN.-	2

HS71_YEAST

165

64.0%

641

69526

5.1

(P10591) Heat shock protein SSA1 (Heat shock protein YG100)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01027.01027.2	4.5143	0.3757	1214.69	1215.308	1	1283.3	90.0%	1	R.VDIIANDQGNR.T	2 2
*	bob1-02.01546.01546.2	3.7475	0.4186	1472.47	1472.594	1	694.9	70.8%	2	R.TTPSFVAFTDTER.L	2
*	bob1-06.02763.02763.2	3.9059	0.465	2140.71	2141.386	1	914.1	52.6%	2	R.TTPSFVAFTDTERLIGDAAK.N	2
*	bob1-02.01575.01575.1	2.1416	0.2027	1269.68	1270.384	70	140.9	45.0%	1	T.PSFVAFTDTER.L	1
*	bob1-02.01554.01554.2	3.7289	0.4271	1269.93	1270.384	1	1305.1	85.0%	1	T.PSFVAFTDTER.L	2
*	bob1-04.01234.01234.2	5.0426	0.4723	2278.63	2277.557	1	1264.6	52.4%	1	R.LIGDAAKNQAAMNPSNTVFDAK.R	2
*	bob1-02.01186.01186.2	4.8918	0.4914	1608.19	1608.766	1	1420.5	78.6%	1	K.NQAAMNPSNTVFDAK.R	2
*	bob1-03.01095.01095.2	4.262	0.5209	1764.79	1764.954	1	928.3	70.0%	1	K.NQAAMNPSNTVFDAKR.L	2
*	bob1-02.01119.01119.2	4.266	0.176	1408.21	1408.526	1	1184.7	81.8%	1	R.NFNDPEVQADMK.H	2
*	bob1-06.01908.01908.2	3.8926	0.4704	2064.29	2065.31	1	861.7	59.4%	2	R.NFNDPEVQADMKHFPFK.L	2
	bob1-03.01904.01904.2	4.1982	0.4752	1601.89	1601.84	1	1433.5	69.2%	1	K.LIDVDGKPQIQVEF.K	2 2
	bob1-05.01390.01390.2	4.432	0.3873	1729.35	1730.014	1	1284.9	82.1%	6	K.LIDVDGKPQIQVEFK.G	2 2
	bob1-06.01700.01700.2	3.9372	0.4347	2145.25	2145.461	1	542.5	55.6%	3	K.LIDVDGKPQIQVEFKGETK.N	2 2
	bob1-06.01631.01631.3	4.7498	0.2905	2145.38	2145.461	1	1057.3	45.8%	3	K.LIDVDGKPQIQVEFKGETK.N	3 3
	bob1-02.02518.02518.2	3.453	0.0988	1550.89	1551.798	1	865.4	73.1%	11	K.NFTPEQISSMVLGK.M	2 2
	bob1-03.02304.02304.1	2.7114	0.2767	1190.38	1189.412	1	834.1	65.0%	2	T.PEQISSMVLGK.M	1 1
	bob1-03.01014.01014.2	4.0975	0.3133	1328.39	1328.523	1	1463.7	86.4%	3	K.MKETAESYLGAK.V	2 2
	bob1-02.01064.01064.1	1.8585	0.0976	1068.44	1069.156	4	182.3	61.1%	1	K.ETAESYLGAK.V	1 1
	bob1-02.01602.01602.2	4.2871	0.5125	1895.13	1896.067	1	460.7	56.2%	4	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
	bob1-02.01506.01506.1	2.2569	0.2771	1097.43	1098.16	2	280.7	68.8%	2	V.PAYFNDSQR.Q	1 1 1 1 1
	bob1-04.01307.01307.2	3.5831	0.3801	1628.55	1628.869	1	683.8	60.0%	1	R.QATKDAGTIAGLNVLR.I	2 2 2 2
	bob1-02.01666.01666.2	4.1582	0.2449	1200.05	1200.381	1	1645.6	95.5%	2	K.DAGTIAGLNVLR.I	2 2 2 2
	bob1-02.01806.01806.2	4.8926	0.4655	1660.77	1660.908	1	1636.8	83.3%	3	R.IINEPTAAAIAYGLDK.K	2 2 2 2
	bob1-04.01486.01486.2	5.1759	0.4332	1789.35	1789.082	1	1144.6	71.9%	5	R.IINEPTAAAIAYGLDKK.G	2 2 2 2
	bob1-04.01459.01459.2	4.3006	0.5121	1562.17	1562.763	1	1090.4	78.6%	1	I.NEPTAAAIAYGLDKK.G	2 2 2 2
	bob1-04.01487.01487.2	3.4446	0.4021	1319.09	1319.544	1	1243.9	70.8%	1	E.PTAAAIAYGLDKK.G	2 2 2 2
	bob1-05.01274.01274.2	3.7824	0.338	1275.11	1275.493	1	1241.7	83.3%	6	R.LVNHFIQEFK.R	2 2
	bob1-04.01278.01278.1	2.4409	0.1306	1275.63	1275.493	3	597.9	61.1%	2	R.LVNHFIQEFK.R	1 1
	bob1-04.01372.01372.2	5.3204	0.5009	1816.19	1817.049	1	2917.6	78.1%	4	K.LDKSQVDEIVLVGGSTR.I	2 2
	bob1-04.01376.01376.3	3.987	0.2961	1817.72	1817.049	1	1040.4	39.1%	1	K.LDKSQVDEIVLVGGSTR.I	3 3
	bob1-02.01296.01296.1	2.3191	0.2441	1056.81	1057.191	1	358.1	68.8%	1	K.LVTDYFNGK.E	1 1
	bob1-03.01242.01242.2	2.9894	0.2274	1555.27	1553.715	1	1356.7	75.0%	1	K.LVTDYFNGKEPNR.S	2 2
	bob1-04.02850.02850.2	6.7615	0.5995	2577.71	2578.792	1	2233.3	54.0%	13	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	bob1-05.02827.02827.3	4.184	0.4196	2580.65	2578.792	1	1164.2	31.0%	2	R.SINPDEAVAYGAAVQAAILTGDESSK.T	3 3
	bob1-07.03907.03907.2	5.6006	0.3896	2556.41	2557.018	1	729.6	50.0%	23	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2
	bob1-03.03434.03434.3	3.6844	0.3933	2557.37	2557.018	1	914.3	30.2%	1	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	3 3
	bob1-06.04062.04062.1	2.4759	0.3169	1473.48	1474.756	2	893.9	57.1%	1	A.PLSLGIETAGGVMTK.L	1 1
*	bob1-06.03035.03035.2	3.6169	0.3557	2257.49	2257.548	1	660.7	50.0%	1	K.KSEIFSTYADNQPGVLIQVF.E	2
*	bob1-06.03035.03035.3	4.1733	0.3743	3385.73	3386.743	1	560.1	25.9%	1	K.KSEIFSTYADNQPGVLIQVFEGERAKTKDN.N	2
*	bob1-06.03398.03398.2	5.4668	0.4838	2599.79	2600.844	1	810.4	47.7%	14	K.SEIFSTYADNQPGVLIQVFEGER.A	2
*	bob1-03.03035.03035.3	4.5367	0.4657	2600.96	2600.844	1	1807.8	38.6%	2	K.SEIFSTYADNQPGVLIQVFEGER.A	3
	bob1-06.02566.02566.2	3.8432	0.4486	1938.95	1939.222	1	1007.9	55.9%	4	K.DNNLLGKFELSGIPPAPR.G	2 2 2 2
	bob1-03.01394.01394.2	3.342	0.4899	1184.05	1184.381	1	1206.4	90.0%	3	K.FELSGIPPAPR.G	2 2 2 2
	bob1-07.02970.02970.2	5.1029	0.4864	2530.67	2531.822	1	1868.3	54.3%	6	R.GVPQIEVTFDVDSNGILNVSAVEK.G	2 2
	bob1-03.00562.00562.3	5.5115	0.2763	2184.17	2184.383	1	2770.6	61.8%	1	K.MVAEAEKFKEEDEKESQR.I	3 3
	bob1-02.00674.00674.2	4.0761	0.1968	1424.93	1425.495	1	1559.4	85.0%	1	K.FKEEDEKESQR.I	2 2
	bob1-05.01443.01443.2	3.2672	0.4348	1665.29	1665.927	1	1331.1	64.3%	1	R.IASKNQLESIAYSLK.N	2 2
	bob1-02.01624.01624.2	2.9621	0.2182	1265.47	1266.437	2	966.8	75.0%	1	K.NQLESIAYSLK.N	2 2
*	bob1-03.01119.01119.2	5.7449	0.4554	2164.39	2164.331	1	1681.6	63.2%	1	K.NTISEAGDKLEQADKDTVTK.K	2
*	bob1-03.01122.01122.3	3.9423	0.2094	2164.52	2164.331	1	766.0	39.5%	1	K.NTISEAGDKLEQADKDTVTK.K	3
*	bob1-03.01302.01302.2	5.0975	0.5746	1881.39	1882.034	1	1274.9	68.8%	1	K.KAEETISWLDSNTTASK.E	2
*	bob1-06.01874.01874.3	5.4135	0.5019	2887.13	2887.127	1	831.1	30.2%	4	K.KAEETISWLDSNTTASKEEFDDKLK.E	3
*	bob1-02.01482.01482.2	4.8939	0.5877	1753.35	1753.86	1	1401.4	76.7%	1	K.AEETISWLDSNTTASK.E	2
*	bob1-05.01386.01386.2	5.0114	0.1029	1599.99	1600.914	1	2131.3	76.9%	2	K.LKELQDIANPIMSK.L	2
*	bob1-02.01404.01404.1	2.3195	0.1387	1358.59	1359.581	1	254.4	54.5%	1	K.ELQDIANPIMSK.L	1
*	bob1-02.01402.01402.2	3.5832	0.1332	1359.27	1359.581	1	953.1	81.8%	2	K.ELQDIANPIMSK.L	2

Similarities: HS72_YEAST(35:21)
HS77_YEAST(1:55)
HS74_YEAST(9:47)
GR78_YEAST(2:54)
HS73_YEAST(8:48)

HS76_YEAST

180

63.2%

612

66463

5.5

(P40150) Heat shock protein SSB2

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-03.01047.01047.2	4.8299	0.3778	1552.55	1552.774	1	1785.8	78.6%	1	R.LIGDAAKNQAALNPR.N	2 2
	bob1-02.00800.00800.2	2.6179	0.223	1124.03	1124.195	7	583.5	62.5%	1	R.RFDDESVQK.D	2 2
	bob1-03.00559.00559.2	3.653	0.3213	1499.39	1498.651	1	818.6	63.6%	1	R.RFDDESVQKDMK.T	2 2
	bob1-03.02370.02370.2	5.9039	0.5496	2160.49	2161.414	1	1842.0	75.0%	27	K.VIDVDGNPVIEVQYLEETK.T	2 2
	bob1-03.02340.02340.3	5.3246	0.4118	2160.95	2161.414	1	2276.5	50.0%	3	K.VIDVDGNPVIEVQYLEETK.T	3 3
	bob1-03.02275.02275.2	3.9564	0.3641	1551.15	1552.826	1	1429.4	73.1%	23	K.TFSPQEISAMVLTK.M	2 2
	bob1-03.02303.02303.1	2.4882	0.2989	1303.51	1304.544	1	528.7	54.5%	1	F.SPQEISAMVLTK.M	1 1
	bob1-03.02302.02302.2	3.1187	0.2347	1216.99	1217.466	1	828.0	75.0%	1	S.PQEISAMVLTK.M	2 2
	bob1-02.01702.01702.2	3.2856	0.4669	1565.93	1565.769	2	242.1	53.8%	3	K.AVITVPAYFNDAQR.Q	2 2
	bob1-02.01719.01719.1	2.6825	0.2987	1081.44	1082.161	1	402.7	75.0%	3	V.PAYFNDAQR.Q	1 1 1 1
	bob1-02.01550.01550.2	3.9033	0.2742	1185.71	1186.354	1	1580.2	86.4%	1	K.DAGAISGLNVLR.I	2 2
	bob1-02.02038.02038.2	5.9852	0.5102	1731.51	1731.002	1	2207.7	82.4%	12	R.IINEPTAAAIAYGLGAGK.S	2 2
	bob1-06.02074.02074.3	4.7638	0.4094	2418.44	2419.569	1	1330.5	39.3%	3	K.STSGNTHLGGQDFDTNLLEHFK.A	3 3
	bob1-06.02116.02116.2	5.1228	0.4546	2418.59	2419.569	1	1006.3	50.0%	3	K.STSGNTHLGGQDFDTNLLEHFK.A	2 2
	bob1-07.03342.03342.2	4.5672	0.5061	2964.15	2965.151	1	869.1	40.4%	7	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	2 2
	bob1-06.01936.01936.2	3.7937	0.2414	1395.11	1395.601	2	1094.0	77.3%	2	R.ARFEDLNAALFK.S	2 2
	bob1-02.01844.01844.1	2.6729	0.3036	1167.58	1168.335	1	938.2	72.2%	2	R.FEDLNAALFK.S	1 1
	bob1-02.01834.01834.2	3.6667	0.3211	1168.09	1168.335	1	900.2	88.9%	2	R.FEDLNAALFK.S	2 2
2	bob1-02.01422.01422.1	2.1822	0.1128	1242.59	1243.443	61	269.2	45.0%	1	K.STLEPVEQVLK.D	1 1 1
2	bob1-02.01418.01418.2	3.0769	0.2697	1242.81	1243.443	2	545.9	80.0%	1	K.STLEPVEQVLK.D	2 2 2
	bob1-03.01539.01539.2	3.0562	0.2348	1558.23	1557.784	1	681.8	73.1%	1	K.STLEPVEQVLKDAK.I	2 2
	bob1-04.01303.01303.2	4.765	0.5	1788.93	1789.039	1	2410.3	71.9%	2	K.ISKSQIDEVVLVGGSTR.I	2 2
	bob1-06.01828.01828.2	3.4359	0.2551	2126.87	2127.489	1	1188.2	50.0%	1	K.ISKSQIDEVVLVGGSTRIPK.V	2 2
	bob1-03.01330.01330.2	5.1552	0.1492	1460.21	1460.627	1	1725.3	80.8%	5	K.SQIDEVVLVGGSTR.I	2 2
	bob1-05.01391.01391.2	3.923	0.2845	1798.41	1799.078	1	1332.1	62.5%	2	K.SQIDEVVLVGGSTRIPK.V	2 2
	bob1-02.01930.01930.1	2.7605	0.3188	1041.48	1042.177	1	782.9	75.0%	3	K.LLSDFFDGK.Q	1 1
	bob1-02.01926.01926.2	3.0645	0.1859	1042.07	1042.177	1	570.4	87.5%	2	K.LLSDFFDGK.Q	2 2
	bob1-05.01734.01734.2	4.0885	0.4096	1540.35	1540.756	1	1237.9	70.8%	5	K.LLSDFFDGKQLEK.S	2 2
	bob1-04.02335.02335.3	3.9749	0.3942	2894.03	2895.106	1	731.0	24.1%	2	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
*	bob1-02.01668.01668.2	5.2754	0.4598	2418.87	2419.61	1	1695.4	57.5%	3	R.TFTTVSDNQTTVQFPVYQGER.V	2
	bob1-02.02171.02171.2	3.2597	0.3085	1278.81	1279.433	1	729.8	85.0%	6	K.ENTLLGEFDLK.N	2 2
	bob1-06.04238.04238.2	5.3203	0.4839	2668.49	2670.154	1	660.9	50.0%	6	K.NIPMMPAGEPVLEAIFEVDANGILK.V	2 2
	bob1-07.04095.04095.2	4.3104	0.4168	2442.75	2442.891	1	1222.9	56.8%	1	I.PMMPAGEPVLEAIFEVDANGILK.V	2 2
	bob1-02.01094.01094.1	2.2907	0.255	1218.58	1219.34	1	281.0	63.6%	1	K.SSNITISNAVGR.L	1 1
	bob1-02.01098.01098.2	3.6785	0.2684	1218.75	1219.34	1	1866.5	90.9%	1	K.SSNITISNAVGR.L	2 2
	bob1-02.01015.01015.1	2.055	0.1359	1095.49	1096.243	12	515.8	62.5%	1	K.MVNQAEEFK.A	1 1
	bob1-02.01014.01014.2	3.3871	0.2442	1095.73	1096.243	1	763.3	87.5%	1	K.MVNQAEEFK.A	2 2
	bob1-03.01322.01322.2	4.3302	0.4015	1899.39	1900.113	1	1330.4	62.5%	1	K.MVNQAEEFKAADEAFAK.K	2 2
	bob1-06.02040.02040.3	3.6413	0.0932	3326.63	3324.677	44	391.8	19.6%	1	N.QAEEFKAADEAFAKKHEARQRLESYVASI.E	3 3
	bob1-07.02183.02183.2	3.3932	0.3979	1840.17	1839.997	1	1214.2	56.7%	1	R.QRLESYVASIEQTVTD.P	2 2
	bob1-02.02739.02739.2	6.2512	0.5282	2169.57	2167.418	1	1620.6	63.2%	16	R.LESYVASIEQTVTDPVLSSK.L	2 2
	bob1-02.01450.01450.2	4.5585	0.5428	1674.47	1674.889	1	1660.0	70.0%	1	Y.VASIEQTVTDPVLSSK.L	2 2
	bob1-06.03206.03206.2	3.5365	0.1745	1373.11	1373.59	1	1488.9	69.2%	1	K.SKIEAALSDALAAL.Q	2 2
	bob1-03.03038.03038.2	6.107	0.4796	2411.59	2412.656	1	2357.6	59.1%	8	K.IEAALSDALAALQIEDPSADELR.K	2 2
	bob1-07.02910.02910.2	4.5089	0.3701	2539.63	2540.83	2	464.6	41.3%	3	K.IEAALSDALAALQIEDPSADELRK.A	2 2
	bob1-07.02871.02871.3	5.1998	0.446	2540.72	2540.83	1	989.8	35.9%	3	K.IEAALSDALAALQIEDPSADELRK.A	3 3
	bob1-07.02892.02892.2	3.2123	0.1968	2298.67	2298.555	2	406.0	38.1%	1	E.AALSDALAALQIEDPSADELRK.A	2 2
	bob1-07.02888.02888.2	2.6685	0.2204	2043.27	2043.238	2	311.3	38.9%	1	L.SDALAALQIEDPSADELRK.A	2 2
	bob1-04.00711.00711.1	1.8018	0.0967	900.59	901.097	12	330.1	57.1%	1	R.KAEVGLKR.V	1 1
	bob1-04.00714.00714.2	2.7395	0.0822	900.97	901.097	1	1238.2	100.0%	1	R.KAEVGLKR.V	2 2

Similarities: HS75_YEAST(49:1)
GR78_YEAST(1:49)
HS73_YEAST(2:48)
HS7E_YEAST(1:49)

RGA2_YEAST

255

63.1%

1009

113291

7.9

(Q06407) Rho-type GTPase-activating protein 2

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01214.01214.2	4.2193	0.5319	1440.87	1441.578	1	1744.1	79.2%	1	K.SIASSQVYELESK.K	2
*	bob1-03.01111.01111.2	3.8218	0.4286	1569.39	1569.752	1	1037.4	65.4%	1	K.SIASSQVYELESKK.W	2
*	bob1-06.01375.01375.2	3.2373	0.2178	1343.27	1343.61	1	1531.0	80.0%	2	R.KKQLLLENQTK.N	2
*	bob1-02.01108.01108.1	2.2416	0.1263	1086.68	1087.261	42	83.0	62.5%	1	K.QLLLENQTK.N	1
*	bob1-04.01264.01264.3	4.3462	0.3787	1660.46	1660.867	1	1004.8	53.8%	3	K.NSSKEDFPIKLPER.S	3
*	bob1-04.01295.01295.2	4.3606	0.3682	1661.35	1660.867	1	1267.7	73.1%	7	K.NSSKEDFPIKLPER.S	2
*	bob1-03.01419.01419.2	2.8609	0.2696	1244.37	1244.433	1	768.5	88.9%	1	K.EDFPIKLPER.S	2
*	bob1-02.01610.01610.2	5.5303	0.3822	2385.27	2385.593	1	969.3	55.0%	2	K.NLVSSNEDQQLTPQVLVSQER.D	2
*	bob1-02.01619.01619.3	6.0175	0.4845	2385.29	2385.593	1	1818.5	42.5%	1	K.NLVSSNEDQQLTPQVLVSQER.D	3
*	bob1-03.01523.01523.3	3.7996	0.3614	4047.77	4048.15	1	588.9	24.3%	1	K.NLVSSNEDQQLTPQVLVSQERDESSLNDNNDNDNSK.D	3
*	bob1-07.03126.03126.3	4.822	0.4026	3750.83	3751.948	1	679.9	22.7%	1	R.TVSIDDILNSTLEHDSNSIEEQSLVDNEDYINK.M	3
*	bob1-06.03004.03004.3	4.8304	0.322	3550.85	3551.71	1	755.2	24.2%	1	V.SIDDILNSTLEHDSNSIEEQSLVDNEDYINK.M	3
*	bob1-02.00978.00978.1	2.0332	0.2324	970.4	971.073	1	527.5	78.6%	1	K.MGEDVTYR.L	1
*	bob1-02.00980.00980.2	3.0854	0.2902	973.93	971.073	1	908.9	85.7%	2	K.MGEDVTYR.L	2
*	bob1-05.01388.01388.2	3.0467	0.1949	1987.39	1988.167	1	706.6	50.0%	1	R.IPNSNSNANRFFSIYDK.E	2
*	bob1-02.01432.01432.1	2.117	0.1773	919.42	920.053	2	902.2	83.3%	2	R.FFSIYDK.E	1
*	bob1-06.01842.01842.3	7.1436	0.5031	3376.31	3377.599	1	1700.7	32.4%	7	R.FFSIYDKEETDKDDTDNKENEIIVNTPR.N	3
*	bob1-06.02687.02687.3	4.199	0.3678	3220.7	3221.625	1	361.9	24.1%	1	R.NSTDKITSPLNSPMAVQMNEEVEPPHGLAL.T	3
*	bob1-04.00934.00934.2	2.778	0.326	1142.23	1142.318	2	571.4	72.2%	1	K.SMNHVSPITR.T	2
*	bob1-04.01150.01150.3	3.683	0.3066	2197.76	2198.4	1	817.9	32.9%	1	R.LSDNGSFSRPQTADNLLPHK.K	3
*	bob1-06.01756.01756.2	2.8513	0.1373	2325.71	2326.574	1	277.9	35.0%	1	R.LSDNGSFSRPQTADNLLPHKK.V	2
*	bob1-06.01778.01778.3	4.3927	0.2984	2325.95	2326.574	1	946.6	33.8%	14	R.LSDNGSFSRPQTADNLLPHKK.V	3
*	bob1-06.01394.01394.2	3.0875	0.2914	1086.89	1087.267	1	802.7	81.2%	4	K.SKNFVHNLK.S	2
*	bob1-02.01479.01479.2	3.3806	0.337	1880.45	1879.98	1	481.6	46.9%	1	R.GQSDSTIYNTLPQHGNF.T	2
*	bob1-06.02022.02022.3	3.9476	0.3403	2832.23	2833.046	1	631.7	28.1%	2	R.GQSDSTIYNTLPQHGNFTVPEFNHK.K	3
*	bob1-06.02010.02010.2	4.1698	0.4829	2832.37	2833.046	1	443.3	37.5%	3	R.GQSDSTIYNTLPQHGNFTVPEFNHK.K	2
*	bob1-03.00903.00903.1	2.728	0.1849	1105.59	1106.264	1	544.8	65.0%	1	K.KAQSSLGSISK.K	1
*	bob1-03.00911.00911.2	2.9741	0.3203	1105.99	1106.264	1	647.0	65.0%	1	K.KAQSSLGSISK.K	2
*	bob1-04.01043.01043.2	3.1941	0.4395	1633.51	1633.776	1	476.9	46.7%	1	R.INGSFTSSSSGHHIAM.F	2
*	bob1-06.01726.01726.2	3.6668	0.422	1780.33	1780.952	1	994.3	59.4%	2	R.INGSFTSSSSGHHIAMF.R	2
*	bob1-06.01678.01678.2	3.8627	0.4141	1936.61	1937.14	1	908.3	52.9%	4	R.INGSFTSSSSGHHIAMFR.T	2
*	bob1-06.01898.01898.2	4.0531	0.3613	1489.53	1489.757	1	3090.9	91.7%	1	M.FRTPPLESGPLFK.R	2
*	bob1-05.01275.01275.2	3.4793	0.3108	1343.41	1342.581	1	1006.1	72.7%	3	F.RTPPLESGPLFK.R	2
*	bob1-02.01531.01531.1	2.6692	0.3156	1186.0	1186.393	1	668.6	70.0%	4	R.TPPLESGPLFK.R	1
*	bob1-03.01450.01450.2	3.4461	0.3819	1187.99	1186.393	1	903.5	85.0%	6	R.TPPLESGPLFK.R	2
*	bob1-03.01464.01464.2	2.7237	0.2677	1085.89	1085.288	1	941.7	72.2%	1	T.PPLESGPLFK.R	2
*	bob1-03.01452.01452.1	2.1221	0.414	987.28	988.172	1	923.3	81.2%	1	P.PLESGPLFK.R	1
*	bob1-07.00510.00510.2	4.342	0.5445	1364.47	1364.464	1	1210.0	81.8%	6	K.RPSLSSESAHHR.S	2
*	bob1-06.01264.01264.3	3.9778	0.3727	1365.2	1364.464	1	1123.5	47.7%	2	K.RPSLSSESAHHR.S	3
*	bob1-03.01179.01179.2	5.0451	0.5276	2643.87	2641.756	1	1448.8	47.9%	2	R.STNALLEDDSTKVDATDESATSLEK.D	2
*	bob1-02.00966.00966.2	4.9253	0.3505	1366.15	1366.422	1	2193.1	87.5%	1	K.VDATDESATSLEK.D	2
*	bob1-06.03130.03130.2	5.1259	0.4619	2651.99	2652.871	1	1164.4	52.3%	3	K.VDATDESATSLEKDFYFTELTLR.K	2
*	bob1-06.03096.03096.3	4.8634	0.3657	2652.26	2652.871	1	2430.3	43.2%	3	K.VDATDESATSLEKDFYFTELTLR.K	3
*	bob1-06.03108.03108.2	3.2795	0.341	2367.83	2367.571	1	427.3	34.2%	1	A.TDESATSLEKDFYFTELTLR.K	2
*	bob1-06.03003.03003.2	4.1548	0.2841	2266.57	2266.466	1	1061.9	50.0%	2	T.DESATSLEKDFYFTELTLR.K	2
*	bob1-03.02411.02411.1	2.2917	0.1734	1304.7	1305.473	5	189.0	55.6%	2	K.DFYFTELTLR.K	1
*	bob1-06.02682.02682.2	3.8923	0.2917	1305.25	1305.473	1	1278.4	83.3%	10	K.DFYFTELTLR.K	2
*	bob1-06.02254.02254.2	3.0566	0.365	1434.07	1433.647	1	1357.5	85.0%	1	K.DFYFTELTLRK.L	2
*	bob1-03.01223.01223.2	3.3906	0.2333	1228.13	1228.434	1	1157.8	83.3%	1	K.KLLQDVENLR.L	2
*	bob1-02.01250.01250.2	3.2646	0.2066	1099.85	1100.26	1	1183.4	93.8%	1	K.LLQDVENLR.L	2
*	bob1-02.01255.01255.1	2.3313	0.1294	1101.67	1100.26	3	375.5	68.8%	2	K.LLQDVENLR.L	1
*	bob1-04.01334.01334.2	3.855	0.29	1412.61	1412.673	1	1406.8	77.3%	1	K.LLQDVENLRLAK.E	2
*	bob1-03.01258.01258.2	3.6535	0.2939	1459.81	1458.615	1	1276.1	81.8%	1	K.ERLLNDVDNLTR.E	2
*	bob1-02.01230.01230.2	3.7139	0.2807	1172.95	1173.312	1	1058.3	94.4%	1	R.LLNDVDNLTR.E	2
*	bob1-02.01235.01235.1	2.067	0.1959	946.52	946.993	3	338.4	78.6%	1	L.NDVDNLTR.E	1
*	bob1-03.01158.01158.2	4.1904	0.5014	1790.83	1791.009	1	1787.0	70.0%	4	R.ESLEQKENIATSITVK.S	2
*	bob1-06.01260.01260.3	3.9937	0.4032	2072.69	2073.23	1	1113.3	36.8%	1	K.SPSSNSDRKGSISNASPKPR.F	3
*	bob1-06.01222.01222.1	2.0479	0.1292	1241.68	1242.421	1	271.0	59.1%	1	R.KGSISNASPKPR.F	1
*	bob1-06.01230.01230.2	4.0745	0.3496	1242.45	1242.421	1	1656.2	81.8%	2	R.KGSISNASPKPR.F	2
*	bob1-03.00770.00770.2	2.7031	0.2614	1114.13	1114.247	1	857.3	70.0%	1	K.GSISNASPKPR.F	2
*	bob1-03.01042.01042.2	4.9179	0.3743	2047.61	2046.204	1	1218.8	61.8%	1	K.IFSSAKDHQVGDLESQQR.S	2
*	bob1-02.00926.00926.2	3.5172	0.3966	1412.15	1412.459	1	1856.8	86.4%	1	K.DHQVGDLESQQR.S	2
*	bob1-03.00954.00954.3	4.0286	0.3713	2091.05	2091.24	1	845.9	36.2%	1	R.SPNSSSGGTTNIAQKEISSPK.L	3
*	bob1-03.00955.00955.2	5.6699	0.4662	2092.81	2091.24	1	1950.8	60.0%	1	R.SPNSSSGGTTNIAQKEISSPK.L	2
*	bob1-03.00932.00932.2	2.8301	0.2672	1079.35	1079.198	1	916.0	83.3%	1	R.VHDELPSPGK.V	2
*	bob1-05.01198.01198.2	5.11	0.5333	1884.57	1885.17	1	969.0	67.6%	12	R.VHDELPSPGKVPLSPSPK.R	2
*	bob1-05.01246.01246.3	4.4852	0.4376	1884.71	1885.17	1	852.0	41.2%	5	R.VHDELPSPGKVPLSPSPK.R	3
*	bob1-04.01214.01214.2	4.6745	0.4351	2136.41	2137.316	1	922.5	66.7%	11	K.RLDYTPDGSHLYGSSLQAR.C	2
*	bob1-04.01142.01142.3	4.169	0.4109	2137.01	2137.316	1	1415.1	44.4%	9	K.RLDYTPDGSHLYGSSLQAR.C	3
*	bob1-03.01226.01226.2	4.0434	0.5285	1981.41	1981.129	1	867.0	58.8%	1	R.LDYTPDGSHLYGSSLQAR.C	2
*	bob1-04.01496.01496.3	4.3226	0.1709	1766.6	1767.007	2	1211.5	44.6%	2	R.IEKDDIGLNMEGLYR.K	3
*	bob1-04.01490.01490.2	4.4487	0.3959	1767.39	1767.007	1	1206.0	71.4%	6	R.IEKDDIGLNMEGLYR.K	2
*	bob1-02.01776.01776.2	4.0487	0.4039	1395.87	1396.558	1	1209.9	77.3%	3	K.DDIGLNMEGLYR.K	2
*	bob1-06.03019.03019.2	3.2707	0.2805	2137.03	2138.252	1	680.5	41.7%	1	R.KSGSQTLVEEIENEFAQNN.S	2
*	bob1-07.02931.02931.3	4.7353	0.3591	3076.64	3076.257	1	731.5	26.9%	6	K.SGSQTLVEEIENEFAQNNSLHSDTLSPK.L	3
*	bob1-07.02687.02687.3	4.1719	0.1789	1820.48	1820.142	2	664.4	39.1%	1	K.LNALLNQDIHAVASVLK.R	3
*	bob1-07.02679.02679.2	5.4735	0.5004	1820.51	1820.142	1	1369.8	68.8%	8	K.LNALLNQDIHAVASVLK.R	2
*	bob1-03.01858.01858.2	2.9672	0.2774	1015.73	1016.225	1	881.6	87.5%	1	R.KLPDPVLSF.S	2
*	bob1-07.04307.04307.2	3.2064	0.3558	2145.81	2147.519	1	381.2	36.1%	1	K.LPDPVLSFSIYDALIDLVR.N	2
*	bob1-06.03586.03586.2	4.3976	0.4665	1277.49	1278.491	1	1685.4	85.0%	26	F.SIYDALIDLVR.N	2
*	bob1-04.01260.01260.2	4.4542	0.3488	1682.85	1681.889	1	1121.1	69.2%	1	R.NNQLIERLPLNNDK.F	2
*	bob1-03.01236.01236.2	4.0424	0.402	1629.27	1629.853	1	1130.0	73.1%	1	R.LPLNNDKFLDSPQK.V	2
*	bob1-03.01884.01884.2	2.9611	0.2249	1095.79	1096.37	1	720.7	87.5%	2	K.VTIYEMVLK.S	2
*	bob1-03.01883.01883.1	2.201	0.1715	1096.38	1096.37	11	524.3	75.0%	1	K.VTIYEMVLK.S	1
*	bob1-03.01892.01892.1	2.3191	0.11	896.45	896.133	5	779.4	83.3%	1	T.IYEMVLK.S	1
*	bob1-03.01896.01896.1	1.864	0.1704	782.45	782.973	4	612.6	80.0%	1	I.YEMVLK.S	1
*2	bob1-03.01978.01978.2	2.5628	0.1	849.99	850.046	3	415.5	91.7%	1	K.SLLEIFK.I	2
*	bob1-03.01114.01114.1	2.3363	0.1374	1304.54	1305.56	20	516.7	60.0%	1	K.ILPVEHQEVLK.V	1
*	bob1-03.01110.01110.2	2.7815	0.2764	1305.25	1305.56	1	403.1	80.0%	1	K.ILPVEHQEVLK.V	2
*	bob1-03.01116.01116.2	3.2307	0.3224	1079.05	1079.241	1	985.7	87.5%	1	L.PVEHQEVLK.V	2
*	bob1-04.00879.00879.2	2.7951	0.2286	808.95	808.999	1	638.3	92.9%	2	K.VLAAHIGK.V	2
*	bob1-03.02018.02018.2	2.6029	0.1379	1168.39	1169.384	217	455.0	61.1%	1	R.NLMNLHNLSL.V	2
*	bob1-01.02606.02606.1	1.8455	0.085	784.17	784.887	8	568.4	80.0%	1	R.NYIVEF.I	1
*	bob1-07.03246.03246.2	4.4114	0.4883	1501.23	1501.725	1	1868.3	86.4%	3	R.NYIVEFILGNYR.D	2
*	bob1-06.01814.01814.2	3.1377	0.1422	1239.15	1239.46	6	759.2	72.2%	1	F.ILGNYRDIFK.Q	2

HS75_YEAST

181

61.9%

612

66470

5.4

(P11484) Heat shock protein SSB1 (Cold-inducible protein YG101)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01678.01678.2	3.724	0.2879	1480.05	1480.66	1	1399.5	83.3%	3	R.VTPSFVAFTPEER.L	2
*	bob1-02.01675.01675.2	4.0699	0.3401	1279.73	1280.423	1	1910.3	90.0%	1	T.PSFVAFTPEER.L	2
	bob1-03.01047.01047.2	4.8299	0.3778	1552.55	1552.774	1	1785.8	78.6%	1	R.LIGDAAKNQAALNPR.N	2 2
	bob1-02.00800.00800.2	2.6179	0.223	1124.03	1124.195	7	583.5	62.5%	1	R.RFDDESVQK.D	2 2
	bob1-03.00559.00559.2	3.653	0.3213	1499.39	1498.651	1	818.6	63.6%	1	R.RFDDESVQKDMK.T	2 2
	bob1-03.02370.02370.2	5.9039	0.5496	2160.49	2161.414	1	1842.0	75.0%	27	K.VIDVDGNPVIEVQYLEETK.T	2 2
	bob1-03.02340.02340.3	5.3246	0.4118	2160.95	2161.414	1	2276.5	50.0%	3	K.VIDVDGNPVIEVQYLEETK.T	3 3
	bob1-03.02275.02275.2	3.9564	0.3641	1551.15	1552.826	1	1429.4	73.1%	23	K.TFSPQEISAMVLTK.M	2 2
	bob1-03.02303.02303.1	2.4882	0.2989	1303.51	1304.544	1	528.7	54.5%	1	F.SPQEISAMVLTK.M	1 1
	bob1-03.02302.02302.2	3.1187	0.2347	1216.99	1217.466	1	828.0	75.0%	1	S.PQEISAMVLTK.M	2 2
	bob1-02.01702.01702.2	3.2856	0.4669	1565.93	1565.769	2	242.1	53.8%	3	K.AVITVPAYFNDAQR.Q	2 2
	bob1-02.01719.01719.1	2.6825	0.2987	1081.44	1082.161	1	402.7	75.0%	3	V.PAYFNDAQR.Q	1 1 1 1
	bob1-02.01550.01550.2	3.9033	0.2742	1185.71	1186.354	1	1580.2	86.4%	1	K.DAGAISGLNVLR.I	2 2
	bob1-02.02038.02038.2	5.9852	0.5102	1731.51	1731.002	1	2207.7	82.4%	12	R.IINEPTAAAIAYGLGAGK.S	2 2
	bob1-06.02074.02074.3	4.7638	0.4094	2418.44	2419.569	1	1330.5	39.3%	3	K.STSGNTHLGGQDFDTNLLEHFK.A	3 3
	bob1-06.02116.02116.2	5.1228	0.4546	2418.59	2419.569	1	1006.3	50.0%	3	K.STSGNTHLGGQDFDTNLLEHFK.A	2 2
	bob1-07.03342.03342.2	4.5672	0.5061	2964.15	2965.151	1	869.1	40.4%	7	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	2 2
	bob1-06.01936.01936.2	3.7937	0.2414	1395.11	1395.601	2	1094.0	77.3%	2	R.ARFEDLNAALFK.S	2 2
	bob1-02.01844.01844.1	2.6729	0.3036	1167.58	1168.335	1	938.2	72.2%	2	R.FEDLNAALFK.S	1 1
	bob1-02.01834.01834.2	3.6667	0.3211	1168.09	1168.335	1	900.2	88.9%	2	R.FEDLNAALFK.S	2 2
2	bob1-02.01422.01422.1	2.1822	0.1128	1242.59	1243.443	61	269.2	45.0%	1	K.STLEPVEQVLK.D	1 1 1
2	bob1-02.01418.01418.2	3.0769	0.2697	1242.81	1243.443	2	545.9	80.0%	1	K.STLEPVEQVLK.D	2 2 2
	bob1-03.01539.01539.2	3.0562	0.2348	1558.23	1557.784	1	681.8	73.1%	1	K.STLEPVEQVLKDAK.I	2 2
	bob1-04.01303.01303.2	4.765	0.5	1788.93	1789.039	1	2410.3	71.9%	2	K.ISKSQIDEVVLVGGSTR.I	2 2
	bob1-06.01828.01828.2	3.4359	0.2551	2126.87	2127.489	1	1188.2	50.0%	1	K.ISKSQIDEVVLVGGSTRIPK.V	2 2
	bob1-03.01330.01330.2	5.1552	0.1492	1460.21	1460.627	1	1725.3	80.8%	5	K.SQIDEVVLVGGSTR.I	2 2
	bob1-05.01391.01391.2	3.923	0.2845	1798.41	1799.078	1	1332.1	62.5%	2	K.SQIDEVVLVGGSTRIPK.V	2 2
	bob1-02.01930.01930.1	2.7605	0.3188	1041.48	1042.177	1	782.9	75.0%	3	K.LLSDFFDGK.Q	1 1
	bob1-02.01926.01926.2	3.0645	0.1859	1042.07	1042.177	1	570.4	87.5%	2	K.LLSDFFDGK.Q	2 2
	bob1-05.01734.01734.2	4.0885	0.4096	1540.35	1540.756	1	1237.9	70.8%	5	K.LLSDFFDGKQLEK.S	2 2
	bob1-04.02335.02335.3	3.9749	0.3942	2894.03	2895.106	1	731.0	24.1%	2	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
	bob1-02.02171.02171.2	3.2597	0.3085	1278.81	1279.433	1	729.8	85.0%	6	K.ENTLLGEFDLK.N	2 2
	bob1-06.04238.04238.2	5.3203	0.4839	2668.49	2670.154	1	660.9	50.0%	6	K.NIPMMPAGEPVLEAIFEVDANGILK.V	2 2
	bob1-07.04095.04095.2	4.3104	0.4168	2442.75	2442.891	1	1222.9	56.8%	1	I.PMMPAGEPVLEAIFEVDANGILK.V	2 2
	bob1-02.01094.01094.1	2.2907	0.255	1218.58	1219.34	1	281.0	63.6%	1	K.SSNITISNAVGR.L	1 1
	bob1-02.01098.01098.2	3.6785	0.2684	1218.75	1219.34	1	1866.5	90.9%	1	K.SSNITISNAVGR.L	2 2
	bob1-02.01015.01015.1	2.055	0.1359	1095.49	1096.243	12	515.8	62.5%	1	K.MVNQAEEFK.A	1 1
	bob1-02.01014.01014.2	3.3871	0.2442	1095.73	1096.243	1	763.3	87.5%	1	K.MVNQAEEFK.A	2 2
	bob1-03.01322.01322.2	4.3302	0.4015	1899.39	1900.113	1	1330.4	62.5%	1	K.MVNQAEEFKAADEAFAK.K	2 2
	bob1-06.02040.02040.3	3.6413	0.0932	3326.63	3324.677	44	391.8	19.6%	1	N.QAEEFKAADEAFAKKHEARQRLESYVASI.E	3 3
	bob1-07.02183.02183.2	3.3932	0.3979	1840.17	1839.997	1	1214.2	56.7%	1	R.QRLESYVASIEQTVTD.P	2 2
	bob1-02.02739.02739.2	6.2512	0.5282	2169.57	2167.418	1	1620.6	63.2%	16	R.LESYVASIEQTVTDPVLSSK.L	2 2
	bob1-02.01450.01450.2	4.5585	0.5428	1674.47	1674.889	1	1660.0	70.0%	1	Y.VASIEQTVTDPVLSSK.L	2 2
	bob1-06.03206.03206.2	3.5365	0.1745	1373.11	1373.59	1	1488.9	69.2%	1	K.SKIEAALSDALAAL.Q	2 2
	bob1-03.03038.03038.2	6.107	0.4796	2411.59	2412.656	1	2357.6	59.1%	8	K.IEAALSDALAALQIEDPSADELR.K	2 2
	bob1-07.02910.02910.2	4.5089	0.3701	2539.63	2540.83	2	464.6	41.3%	3	K.IEAALSDALAALQIEDPSADELRK.A	2 2
	bob1-07.02871.02871.3	5.1998	0.446	2540.72	2540.83	1	989.8	35.9%	3	K.IEAALSDALAALQIEDPSADELRK.A	3 3
	bob1-07.02892.02892.2	3.2123	0.1968	2298.67	2298.555	2	406.0	38.1%	1	E.AALSDALAALQIEDPSADELRK.A	2 2
	bob1-07.02888.02888.2	2.6685	0.2204	2043.27	2043.238	2	311.3	38.9%	1	L.SDALAALQIEDPSADELRK.A	2 2
	bob1-04.00711.00711.1	1.8018	0.0967	900.59	901.097	12	330.1	57.1%	1	R.KAEVGLKR.V	1 1
	bob1-04.00714.00714.2	2.7395	0.0822	900.97	901.097	1	1238.2	100.0%	1	R.KAEVGLKR.V	2 2

Similarities: HS76_YEAST(49:2)
GR78_YEAST(1:50)
HS73_YEAST(2:49)
HS7E_YEAST(1:50)

MPT4_YEAST

61.5%

273

29995

9.7

(P39015) Suppressor protein MPT4 (STM1 protein) (GU4 nucleic-binding protein 2) (G4p2 protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.03188.03188.3	4.3949	0.2656	2623.37	2623.018	1	632.4	28.3%	2	N.PFDLLGNDVEDADVVVLPPKEIVK.S	3
*	bob1-03.03203.03203.2	3.7659	0.3874	2148.53	2150.477	1	584.6	44.7%	1	L.LGNDVEDADVVVLPPKEIVK.S	2
*	bob1-03.03222.03222.2	3.5599	0.1759	2036.81	2037.318	1	536.3	52.8%	4	L.GNDVEDADVVVLPPKEIVK.S	2
*	bob1-02.00826.00826.2	3.2616	0.3684	1309.01	1309.462	1	797.9	75.0%	1	K.KADVPPPSADPSK.A	2
*	bob1-06.01234.01234.2	2.6553	0.1844	1424.25	1424.562	52	221.5	45.8%	1	K.NRPRPSGNEGAIR.D	2
*	bob1-06.01223.01223.3	3.6095	0.3359	1424.6	1424.562	1	892.9	45.8%	1	K.NRPRPSGNEGAIR.D	3
*	bob1-03.00564.00564.2	3.083	0.274	1280.85	1281.406	1	1262.6	72.7%	1	R.SKDVTDSATTKK.S	2
*	bob1-05.00579.00579.3	5.0376	0.2913	3029.3	3030.183	1	1446.9	28.4%	1	K.ELSAEKEAQADAAAEIAEDAAEAEDAGKPK.T	3
*	bob1-03.01554.01554.2	6.0354	0.5024	2371.39	2372.461	1	1772.2	58.7%	4	K.EAQADAAAEIAEDAAEAEDAGKPK.T	2
*	bob1-02.02323.02323.2	5.1868	0.4756	2097.27	2097.249	1	1637.6	58.8%	1	K.TAQLSLQDYLNQQANNQF.N	2
*	bob1-02.01982.01982.3	4.9469	0.2903	2338.94	2339.527	1	927.5	36.8%	1	K.TAQLSLQDYLNQQANNQFNK.V	3
*	bob1-02.01998.01998.2	6.3996	0.3863	2338.99	2339.527	1	2296.7	65.8%	4	K.TAQLSLQDYLNQQANNQFNK.V	2
*	bob1-06.02227.02227.3	4.0371	0.2537	2864.15	2864.144	1	1081.9	31.2%	3	K.TAQLSLQDYLNQQANNQFNKVPEAK.K	3
*	bob1-06.02152.02152.2	3.6132	0.2238	2865.49	2864.144	1	963.3	41.7%	2	K.TAQLSLQDYLNQQANNQFNKVPEAK.K	2
*	bob1-06.02151.02151.2	2.5364	0.0949	2563.87	2563.83	9	310.9	26.2%	1	Q.LSLQDYLNQQANNQFNKVPEAK.K	2
*	bob1-06.02148.02148.2	3.2428	0.2664	2451.19	2450.67	1	623.1	40.0%	1	L.SLQDYLNQQANNQFNKVPEAK.K	2
*	bob1-05.01132.01132.3	3.8369	0.3385	2491.94	2491.801	1	856.4	29.8%	1	K.KVELDAERIETAEKEAYVPATK.V	3
*	bob1-07.01910.01910.2	4.1032	0.4713	2050.29	2051.217	1	1343.3	62.5%	1	K.TKEYLEFDATFVESNTR.K	2
*	bob1-07.02092.02092.2	4.9517	0.5719	1821.53	1821.938	1	1691.4	71.4%	4	K.EYLEFDATFVESNTR.K	2
*	bob1-07.01928.01928.2	3.4961	0.4844	1948.77	1950.112	1	934.8	53.3%	1	K.EYLEFDATFVESNTRK.N	2
*	bob1-01.02823.02823.1	1.857	0.2126	1142.49	1143.282	9	330.3	55.0%	1	R.NIDVSNLPSLA.-	1

U	R19A_YEAST	11	48	60.1%	143	15786	9.6	(P07280) 40S ribosomal protein S19-A (S16A) (YS16) (RP55) (YP45)
U	R19B_YEAST	11	48	60.1%	143	15760	9.6	(P07281) 40S ribosomal protein S19-B (S16B) (YS16) (RP55)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-06.03611.03611.2	5.6957	0.6067	1929.35	1930.127	1	2376.6	75.0%	24	R.DVAAQDFINAYASFLQR.Q	2
bob1-03.03170.03170.3	5.5873	0.5201	1929.56	1930.127	1	2845.9	54.7%	4	R.DVAAQDFINAYASFLQR.Q	3
bob1-04.01418.01418.2	3.2333	0.2364	1546.89	1545.819	1	470.9	61.5%	2	R.QGKLEVPGYVDIVK.T	2
bob1-02.01792.01792.1	2.0781	0.0966	1231.5	1232.462	44	396.9	55.0%	1	K.LEVPGYVDIVK.T	1
bob1-02.01850.01850.2	3.0938	0.4589	1232.15	1232.462	1	764.3	85.0%	3	K.LEVPGYVDIVK.T	2
bob1-02.01662.01662.2	4.3528	0.4797	2044.35	2045.187	1	672.2	67.6%	4	K.TSSGNEMPPQDAEGWFYK.R	2
bob1-03.00912.00912.2	3.0934	0.3306	1198.19	1198.324	1	990.0	80.0%	1	K.HIDASGSINRK.V	2
bob1-07.02188.02188.2	4.7453	0.471	1737.51	1738.121	1	2094.8	76.7%	1	K.VLQALEKIGIVEISPK.G	2
bob1-02.01275.01275.1	2.0041	0.1784	955.53	956.17	6	462.7	68.8%	1	K.IGIVEISPK.G	1
bob1-02.01279.01279.2	3.1744	0.2355	955.93	956.17	1	1236.1	93.8%	1	K.IGIVEISPK.G	2
bob1-01.02264.02264.1	2.5899	0.2928	1120.32	1119.171	2	484.4	55.6%	6	R.IAAQTLEEDE.-	1

IMD3_YEAST

124

55.6%

523

56585

7.4

(P50095) Probable inosine-5'-monophosphate dehydrogenase IMD3 (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02375.02375.3	4.1122	0.2995	1888.13	1889.174	3	968.1	35.9%	1	K.SLPRLDGLSVQELMDSK.T	3
*	bob1-02.01984.01984.2	4.4979	0.3047	1438.37	1435.632	1	1070.0	79.2%	6	R.LDGLSVQELMDSK.T	2
*	bob1-06.03991.03991.2	3.3004	0.3542	2896.75	2898.282	1	407.8	34.6%	2	R.GGLTYNDFLVLPGLVDFPSSEVSLQTK.L	2
*	bob1-05.03283.03283.2	3.1862	0.375	1818.45	1818.077	1	733.5	53.1%	1	V.LPGLVDFPSSEVSLQTK.L	2
	bob1-06.02071.02071.2	4.1738	0.3418	2708.17	2707.056	1	1023.6	41.7%	1	R.VKNYENGFINNPIVISPTTTVGEAK.S	2 2 2
	bob1-02.02146.02146.2	5.2567	0.5352	2478.95	2479.749	1	1056.3	52.3%	7	K.NYENGFINNPIVISPTTTVGEAK.S	2 2 2
	bob1-02.01884.01884.2	3.0116	0.324	1388.27	1388.519	1	1008.0	70.8%	1	R.FGFSGFPVTEDGK.R	2 2
*	bob1-04.01530.01530.2	4.1208	0.5012	1544.39	1544.707	1	599.1	69.2%	4	R.FGFSGFPVTEDGKR.N	2
*	bob1-03.01147.01147.1	2.0182	0.2513	876.5	877.09	71	126.3	57.1%	1	K.LMGIVTSR.D	1
*	bob1-03.01156.01156.2	2.7608	0.2055	877.15	877.09	2	658.2	85.7%	1	K.LMGIVTSR.D	2
	bob1-04.02702.02702.2	5.7511	0.545	2094.49	2095.372	1	2141.4	73.5%	17	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
	bob1-02.01690.01690.2	6.121	0.6116	1941.23	1942.177	1	1820.6	66.7%	4	K.NPVTGAQGITLSEGNEILK.K	2 2 2
	bob1-04.01338.01338.2	5.7855	0.515	2069.73	2070.351	1	1943.3	65.8%	4	K.NPVTGAQGITLSEGNEILKK.I	2 2 2
	bob1-04.01339.01339.3	3.8369	0.4015	2070.53	2070.351	1	520.7	35.5%	2	K.NPVTGAQGITLSEGNEILKK.I	3 3 3
	bob1-04.01348.01348.2	3.7904	0.4716	1760.13	1759.998	1	845.9	59.4%	1	V.TGAQGITLSEGNEILKK.I	2 2 2
	bob1-03.02590.02590.2	5.8423	0.5346	1759.37	1760.059	1	2566.9	83.3%	36	K.LLIVDDNGNLVSMLSR.T	2 2
*	bob1-03.01315.01315.2	2.7391	0.2725	1833.85	1832.03	1	303.4	46.9%	1	K.QLLCGAAIGTIDADKER.L	2
	bob1-02.02654.02654.2	5.0193	0.1503	1747.05	1746.958	1	1750.2	73.3%	8	K.ETFPDLEIIAGNVATR.E	2 2
	bob1-02.01468.01468.2	4.2827	0.5119	1473.23	1470.626	1	1173.5	75.0%	2	R.EQAANLIAAGADGLR.I	2 2 2 2
2	bob1-06.03158.03158.2	2.8015	0.2103	3170.35	3171.579	1	313.2	23.3%	1	K.ALALGSSTVMMGGMLAGTTESPGEYFYQDGK.R	2 2 2
	bob1-02.01074.01074.1	1.9003	0.1849	1037.4	1038.222	3	451.9	61.1%	1	R.GMGSIDAMQK.T	1 1 1 1
	bob1-02.01076.01076.2	2.7273	0.131	1038.03	1038.222	1	1132.3	88.9%	1	R.GMGSIDAMQK.T	2 2 2 2
	bob1-04.01740.01740.3	4.8883	0.4156	2157.77	2158.37	1	2503.9	43.8%	1	R.YFSESDSVLVAQGVSGAVVDK.G	3 3 3 3
	bob1-04.01727.01727.2	5.8564	0.5861	2158.55	2158.37	1	2315.8	72.5%	10	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2 2
	bob1-06.02112.02112.2	4.0463	0.4391	2542.67	2543.833	1	704.8	43.8%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	2 2 2 2
	bob1-06.02106.02106.3	4.3979	0.4127	2545.01	2543.833	1	563.0	35.4%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	3 3 3 3
	bob1-06.01932.01932.2	5.0965	0.4666	2670.85	2672.007	1	1147.5	50.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	2 2 2 2
	bob1-06.01928.01928.3	4.2737	0.4126	2671.43	2672.007	1	641.2	32.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	3 3 3 3
	bob1-03.01146.01146.2	3.6725	0.3105	1417.45	1417.646	1	1105.3	70.8%	1	K.SLTLLKENVQSGK.V	2 2
	bob1-04.01086.01086.2	4.7136	0.4679	1941.65	1942.095	1	1024.3	52.9%	5	R.TASAQLEGGVHNLHSYEK.R	2 2 2

Similarities: IMD4_YEAST(14:16)
IMD2_YEAST(18:12)
O42831(9:21)
IMD1_YEAST(8:22)

HS72_YEAST

132

54.4%

638

69339

5.1

(P10592) Heat shock protein SSA2

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01027.01027.2	4.5143	0.3757	1214.69	1215.308	1	1283.3	90.0%	1	R.VDIIANDQGNR.T	2 2
*	bob1-02.01284.01284.2	3.9945	0.3304	1592.03	1592.767	1	1475.5	75.0%	2	K.NQAAMNPANTVFDAK.R	2
	bob1-03.01904.01904.2	4.1982	0.4752	1601.89	1601.84	1	1433.5	69.2%	1	K.LIDVDGKPQIQVEF.K	2 2
	bob1-05.01390.01390.2	4.432	0.3873	1729.35	1730.014	1	1284.9	82.1%	6	K.LIDVDGKPQIQVEFK.G	2 2
	bob1-06.01700.01700.2	3.9372	0.4347	2145.25	2145.461	1	542.5	55.6%	3	K.LIDVDGKPQIQVEFKGETK.N	2 2
	bob1-06.01631.01631.3	4.7498	0.2905	2145.38	2145.461	1	1057.3	45.8%	3	K.LIDVDGKPQIQVEFKGETK.N	3 3
	bob1-02.02518.02518.2	3.453	0.0988	1550.89	1551.798	1	865.4	73.1%	11	K.NFTPEQISSMVLGK.M	2 2
	bob1-03.02304.02304.1	2.7114	0.2767	1190.38	1189.412	1	834.1	65.0%	2	T.PEQISSMVLGK.M	1 1
	bob1-03.01014.01014.2	4.0975	0.3133	1328.39	1328.523	1	1463.7	86.4%	3	K.MKETAESYLGAK.V	2 2
	bob1-02.01064.01064.1	1.8585	0.0976	1068.44	1069.156	4	182.3	61.1%	1	K.ETAESYLGAK.V	1 1
	bob1-02.01602.01602.2	4.2871	0.5125	1895.13	1896.067	1	460.7	56.2%	4	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
	bob1-02.01506.01506.1	2.2569	0.2771	1097.43	1098.16	2	280.7	68.8%	2	V.PAYFNDSQR.Q	1 1 1 1 1
	bob1-04.01307.01307.2	3.5831	0.3801	1628.55	1628.869	1	683.8	60.0%	1	R.QATKDAGTIAGLNVLR.I	2 2 2 2
	bob1-02.01666.01666.2	4.1582	0.2449	1200.05	1200.381	1	1645.6	95.5%	2	K.DAGTIAGLNVLR.I	2 2 2 2
	bob1-02.01806.01806.2	4.8926	0.4655	1660.77	1660.908	1	1636.8	83.3%	3	R.IINEPTAAAIAYGLDK.K	2 2 2 2
	bob1-04.01486.01486.2	5.1759	0.4332	1789.35	1789.082	1	1144.6	71.9%	5	R.IINEPTAAAIAYGLDKK.G	2 2 2 2
	bob1-04.01459.01459.2	4.3006	0.5121	1562.17	1562.763	1	1090.4	78.6%	1	I.NEPTAAAIAYGLDKK.G	2 2 2 2
	bob1-04.01487.01487.2	3.4446	0.4021	1319.09	1319.544	1	1243.9	70.8%	1	E.PTAAAIAYGLDKK.G	2 2 2 2
	bob1-05.01274.01274.2	3.7824	0.338	1275.11	1275.493	1	1241.7	83.3%	6	R.LVNHFIQEFK.R	2 2
	bob1-04.01278.01278.1	2.4409	0.1306	1275.63	1275.493	3	597.9	61.1%	2	R.LVNHFIQEFK.R	1 1
	bob1-04.01372.01372.2	5.3204	0.5009	1816.19	1817.049	1	2917.6	78.1%	4	K.LDKSQVDEIVLVGGSTR.I	2 2
	bob1-04.01376.01376.3	3.987	0.2961	1817.72	1817.049	1	1040.4	39.1%	1	K.LDKSQVDEIVLVGGSTR.I	3 3
	bob1-02.01296.01296.1	2.3191	0.2441	1056.81	1057.191	1	358.1	68.8%	1	K.LVTDYFNGK.E	1 1
	bob1-03.01242.01242.2	2.9894	0.2274	1555.27	1553.715	1	1356.7	75.0%	1	K.LVTDYFNGKEPNR.S	2 2
	bob1-04.02850.02850.2	6.7615	0.5995	2577.71	2578.792	1	2233.3	54.0%	13	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	bob1-05.02827.02827.3	4.184	0.4196	2580.65	2578.792	1	1164.2	31.0%	2	R.SINPDEAVAYGAAVQAAILTGDESSK.T	3 3
	bob1-07.03907.03907.2	5.6006	0.3896	2556.41	2557.018	1	729.6	50.0%	23	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2
	bob1-03.03434.03434.3	3.6844	0.3933	2557.37	2557.018	1	914.3	30.2%	1	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	3 3
	bob1-06.04062.04062.1	2.4759	0.3169	1473.48	1474.756	2	893.9	57.1%	1	A.PLSLGIETAGGVMTK.L	1 1
	bob1-03.02964.02964.2	4.888	0.2286	2586.05	2586.817	1	802.6	47.7%	5	K.SEVFSTYADNQPGVLIQVFEGER.A	2 2
	bob1-03.02976.02976.3	3.8741	0.2868	2586.08	2586.817	1	1077.7	30.7%	1	K.SEVFSTYADNQPGVLIQVFEGER.A	3 3
	bob1-06.02566.02566.2	3.8432	0.4486	1938.95	1939.222	1	1007.9	55.9%	4	K.DNNLLGKFELSGIPPAPR.G	2 2 2 2
	bob1-03.01394.01394.2	3.342	0.4899	1184.05	1184.381	1	1206.4	90.0%	3	K.FELSGIPPAPR.G	2 2 2 2
	bob1-07.02970.02970.2	5.1029	0.4864	2530.67	2531.822	1	1868.3	54.3%	6	R.GVPQIEVTFDVDSNGILNVSAVEK.G	2 2
	bob1-03.00562.00562.3	5.5115	0.2763	2184.17	2184.383	1	2770.6	61.8%	1	K.MVAEAEKFKEEDEKESQR.I	3 3
	bob1-02.00674.00674.2	4.0761	0.1968	1424.93	1425.495	1	1559.4	85.0%	1	K.FKEEDEKESQR.I	2 2
	bob1-05.01443.01443.2	3.2672	0.4348	1665.29	1665.927	1	1331.1	64.3%	1	R.IASKNQLESIAYSLK.N	2 2
	bob1-02.01624.01624.2	2.9621	0.2182	1265.47	1266.437	2	966.8	75.0%	1	K.NQLESIAYSLK.N	2 2
*	bob1-03.01159.01159.2	4.7444	0.3586	2133.87	2134.305	1	1643.7	57.9%	1	K.NTISEAGDKLEQADKDAVTK.K	2
*	bob1-03.01376.01376.2	4.9517	0.529	1879.79	1880.062	1	1355.6	65.6%	1	K.KAEETIAWLDSNTTATK.E	2

Similarities: HS71_YEAST(35:5)
HS77_YEAST(1:39)
HS74_YEAST(11:29)
GR78_YEAST(2:38)
HS73_YEAST(8:32)

GBLP_YEAST

50.5%

319

34805

6.2

(P38011) Guanine nucleotide-binding protein beta subunit-like protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02595.02595.2	2.5971	0.3334	2838.99	2839.137	1	683.9	31.5%	1	R.GTLEGHNGWVTSLATSAGQPNLLLSASR.D	2
*	bob1-03.01231.01231.2	2.9026	0.245	990.75	991.175	4	763.9	92.9%	1	R.DKTLISWK.L	2
*	bob1-02.01331.01331.2	4.2658	0.4304	1439.13	1439.568	1	2011.6	86.4%	2	R.LWDVATGETYQR.F	2
*	bob1-07.02195.02195.2	4.513	0.5452	2054.17	2055.267	1	905.7	61.8%	1	K.GQCLATLLGHNDWVSQVR.V	2
*	bob1-03.01092.01092.2	4.3685	0.4319	2187.53	2188.353	1	655.0	50.0%	1	R.VVPNEKADDDSVTIISAGNDK.M	2
*	bob1-02.01138.01138.2	4.7307	0.4134	1521.11	1521.578	1	2365.7	82.1%	1	K.ADDDSVTIISAGNDK.M	2
*	bob1-02.02471.02471.2	4.4043	0.3774	1360.83	1361.599	1	1459.0	77.3%	6	K.DGEIMLWNLAAK.K	2
*	bob1-07.02850.02850.2	4.7189	0.5203	2247.37	2248.515	1	1780.5	57.9%	6	K.AMYTLSAQDEVFSLAFSPNR.Y	2
*	bob1-04.02256.02256.2	3.8527	0.3845	1882.45	1883.068	1	864.9	50.0%	4	Y.TLSAQDEVFSLAFSPNR.Y	2
*	bob1-03.01567.01567.1	3.3318	0.2965	1265.54	1266.483	1	1067.7	77.3%	1	R.YWLAAATATGIK.V	1
*	bob1-04.01514.01514.2	4.2201	0.3285	1266.09	1266.483	1	1917.5	90.9%	3	R.YWLAAATATGIK.V	2
*	bob1-03.03310.03310.2	3.966	0.4073	2344.83	2345.613	1	1035.8	47.4%	3	K.VFSLDPQYLVDDLRPEFAGY.S	2
*	bob1-06.02799.02799.2	3.78	0.3884	2313.43	2314.557	1	495.1	50.0%	1	F.SLDPQYLVDDLRPEFAGYSK.A	2
*	bob1-06.02800.02800.2	4.461	0.4334	1998.21	1999.23	1	1123.1	56.2%	1	D.PQYLVDDLRPEFAGYSK.A	2
*	bob1-01.02748.02748.1	1.9185	0.3267	948.4	949.113	20	269.8	64.3%	2	R.VWQVMTAN.-	1

RL12_YEAST

49.1%

165

17823

9.4

(P17079) 60S ribosomal protein L12 (L15) (YL23)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.00998.00998.2	4.4585	0.4345	1299.29	1298.482	1	1612.8	78.6%	3	R.AVGGEVGASAALAPK.I	2
*	bob1-03.01240.01240.2	2.8176	0.2836	882.05	882.091	1	560.3	87.5%	1	K.IGPLGLSPK.K	2
*	bob1-02.02515.02515.2	4.7197	0.5335	1814.71	1814.133	1	663.7	63.9%	2	R.QAAASVVPSASSLVITALK.E	2
*	bob1-07.02216.02216.2	4.4814	0.4795	1708.71	1708.912	1	2131.7	82.1%	1	K.HSGNIQLDEIIEIAR.Q	2
*	bob1-07.02472.02472.2	4.0069	0.4471	2563.59	2564.811	1	567.4	40.9%	1	R.VDFKNPHDIIEGINAGEIEIPEN.-	2
*	bob1-03.01984.01984.2	4.8882	0.3969	2074.13	2075.24	1	941.4	66.7%	4	K.NPHDIIEGINAGEIEIPEN.-	2

RS22_YEAST

48.8%

129

14495

9.9

(P04648) 40S ribosomal protein S22 (S24) (YS22) (RP50) (YP58)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02367.02367.2	4.8349	0.395	1887.07	1888.088	1	1966.0	70.6%	3	-.TRSSVLADALNAINNAEK.T	2
*	bob1-03.02667.02667.2	5.6358	0.3975	1631.07	1630.795	1	2484.9	76.7%	9	R.SSVLADALNAINNAEK.T	2
*	bob1-03.02695.02695.3	5.1796	0.2882	1631.09	1630.795	1	2386.6	58.3%	1	R.SSVLADALNAINNAEK.T	3
*	bob1-04.01396.01396.2	2.6701	0.1885	1751.87	1751.852	1	458.4	53.8%	1	K.HGYIGEFEYIDDHR.S	2
*	bob1-07.02384.02384.2	2.9853	0.3542	1698.35	1697.975	2	673.9	57.1%	1	K.IGDIEKWTANLLPAR.Q	2
*	bob1-03.01382.01382.1	2.2841	0.1151	1041.63	1042.226	55	198.6	56.2%	1	K.WTANLLPAR.Q	1
*	bob1-03.01374.01374.2	3.3806	0.2565	1042.05	1042.226	5	960.6	81.2%	1	K.WTANLLPAR.Q	2
*	bob1-05.01175.01175.2	4.7494	0.5042	1743.27	1743.973	1	1413.8	70.0%	4	Y.VILTTSAGIMDHEEAR.R	2

RS28_YEAST

47.8%

7565

10.8

(P02380) 40S ribosomal protein S28 (S33) (YS27)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01811.01811.2	3.2555	0.4628	1794.49	1793.974	1	600.1	50.0%	1	R.GGVTQVRVEFLEDTSR.T	2
*	bob1-02.01202.01202.1	1.9775	0.1399	1095.46	1096.182	1	446.2	75.0%	1	R.VEFLEDTSR.T	1
*	bob1-06.02232.02232.2	4.3433	0.4301	1859.57	1858.12	1	1169.1	66.7%	1	K.GPVRENDILVLMESER.E	2
*	bob1-03.02092.02092.2	4.5714	0.4555	1447.63	1448.631	1	1434.3	81.8%	16	R.ENDILVLMESER.E	2

RIM1_YEAST

47.4%

135

15386

8.3

(P32445) Single-stranded DNA-binding protein RIM1, mitochondrial precursor (ssDNA-binding protein, mitochondrial)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01044.01044.2	4.8887	0.4734	1677.65	1677.728	1	1418.5	64.3%	1	R.IGSEFTEHTSANNNR.Y	2
*	bob1-04.02234.02234.2	2.612	0.2411	2310.37	2310.488	1	346.1	36.1%	1	R.RDGQTNWYNITVFNEPQIN.F	2
*	bob1-06.03212.03212.2	3.2584	0.2817	2456.35	2457.664	1	540.9	42.1%	1	R.RDGQTNWYNITVFNEPQINF.L	2
*	bob1-06.03998.03998.3	3.9873	0.2798	3064.28	3063.353	2	560.4	25.0%	1	R.DGQTNWYNITVFNEPQINFLTEYVR.K	3
*	bob1-06.03410.03410.2	3.6946	0.3195	2198.15	2198.483	1	593.9	52.9%	2	Y.NITVFNEPQINFLTEYVR.K	2
*	bob1-06.02328.02328.2	4.3796	0.2862	2017.29	2016.261	1	1219.4	55.9%	1	R.KGALVYVEADAANYVFER.D	2
*	bob1-05.02303.02303.2	5.7651	0.5148	1890.23	1888.087	1	2729.4	71.9%	9	K.GALVYVEADAANYVFER.D	2
*	bob1-06.02404.02404.2	4.7945	0.4246	2390.87	2390.568	1	1134.3	50.0%	1	K.GALVYVEADAANYVFERDDGSK.G	2

RL31_YEAST

47.3%

112

12822

10.0

(P04649) 60S ribosomal protein L31 (L34) (YL28)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01007.01007.1	2.1323	0.2629	787.4	787.937	1	605.8	83.3%	1	R.LHGVSFK.K	1
*	bob1-02.01716.01716.2	2.6925	0.2289	1282.89	1283.513	7	234.1	65.0%	2	R.LAPELNQAIWK.R	2
*	bob1-04.01322.01322.2	2.7748	0.1919	1439.55	1439.701	1	330.7	68.2%	1	R.LAPELNQAIWKR.G	2
*	bob1-07.02914.02914.2	5.0419	0.4953	2549.53	2550.825	1	915.9	50.0%	3	R.NEEEDAKNPLFSYVEPVLVASAK.G	2
*	bob1-07.02894.02894.3	4.7633	0.308	2550.26	2550.825	1	1146.8	37.5%	1	R.NEEEDAKNPLFSYVEPVLVASAK.G	3
*	bob1-03.02792.02792.2	4.6904	0.5166	1734.37	1735.033	1	1872.9	73.3%	2	K.NPLFSYVEPVLVASAK.G	2
*	bob1-01.02608.02608.1	2.4104	0.2362	1161.58	1160.266	64	295.0	45.0%	5	K.GLQTVVVEEDA.-	1

RS12_YEAST

46.9%

143

15472

4.7

(P48589) 40S ribosomal protein S12

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.00990.00990.2	2.9227	0.2369	1052.93	1053.206	1	1058.7	88.9%	1	R.TALVHDGLAR.G	2
*	bob1-04.01342.01342.2	4.4534	0.2157	1849.07	1850.166	1	1157.2	62.5%	2	K.LVEGLANDPENKVPLIK.V	2
*	bob1-02.01412.01412.1	2.0433	0.1997	1059.58	1059.21	37	82.5	55.6%	1	K.QLGEWAGLGK.I	1
*	bob1-04.00986.00986.2	3.7493	0.3479	1085.61	1085.376	1	1056.8	90.0%	4	R.KVVGASVVVVK.N	2
*	bob1-04.00996.00996.1	2.5729	0.2581	1086.66	1085.376	1	463.7	60.0%	3	R.KVVGASVVVVK.N	1
*	bob1-06.03588.03588.2	6.2187	0.5258	2256.75	2254.451	1	1810.5	66.7%	24	K.NWGAETDELSMIMEHFSQQ.-	2

RS21_YEAST

46.0%

9746

6.1

(P05760) 40S ribosomal protein S21 (S26) (YS25)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.00910.00910.2	3.6756	0.3151	1370.33	1368.489	1	1113.3	75.0%	3	K.ADDHASVQINVAK.V	2
*	bob1-06.02708.02708.2	2.8455	0.4116	1759.01	1759.999	1	533.5	56.7%	2	R.AIPGEYVTYALSGYVR.S	2
*	bob1-02.00666.00666.2	3.2208	0.3241	1236.17	1236.241	1	754.0	75.0%	1	R.SRGESDDSLNR.L	2

HS78_YEAST

45.4%

692

77235

5.2

(P32589) Heat shock protein homolog SSE1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01542.01542.2	4.1891	0.4906	1513.21	1513.694	1	1791.5	75.0%	2	F.GLDLGNNNSVLAVAR.N	2 2
*	bob1-04.01262.01262.2	4.0309	0.45	1585.63	1585.76	1	1165.6	76.9%	1	R.NRGIDIVVNEVSNR.S	2
*	bob1-03.01366.01366.2	3.9714	0.3572	1316.31	1315.469	1	1918.0	81.8%	4	R.GIDIVVNEVSNR.S	2
*	bob1-04.01256.01256.2	4.7203	0.4889	1928.71	1929.096	1	953.3	60.0%	8	R.IIGLDYHHPDFEQESK.H	2
	bob1-02.01050.01050.1	2.2256	0.2438	893.46	893.975	1	505.3	78.6%	1	R.YNIADAAR.I	1 1
*	bob1-03.01798.01798.2	5.2557	0.3527	1655.37	1654.904	1	2578.0	83.3%	5	R.IVNDVTAAGVSYGIFK.T	2
*	bob1-06.02952.02952.2	4.8141	0.4854	1798.01	1798.946	1	1551.8	78.6%	3	R.DFDLAITEHFADEFK.T	2
*	bob1-02.03068.03068.3	4.205	0.3716	2869.49	2868.145	1	814.0	26.0%	2	K.VLSANTNAPFSVESVMNDVDVSSQLSR.E	3
*	bob1-06.02630.02630.2	3.79	0.0969	1597.47	1597.849	1	1707.0	83.3%	2	R.EELEELVKPLLER.V	2
*	bob1-05.02582.02582.2	5.0622	0.4614	1836.47	1837.037	1	2167.7	71.9%	8	K.LSAEEVDFVEIIGGTTR.I	2
*	bob1-05.01636.01636.2	3.4321	0.2598	2448.69	2449.72	1	427.2	40.9%	2	K.QSISEAFGKPLSTTLNQDEAIAK.G	2
	bob1-06.01782.01782.2	3.9127	0.3216	1514.39	1514.734	1	1370.3	69.2%	1	K.GAAFICAIHSPTLR.V	2 2
*	bob1-06.01800.01800.2	2.6754	0.2288	2002.89	2002.19	1	359.3	43.3%	1	F.KFEDIHPYSVSYSWDK.Q	2
*	bob1-06.02162.02162.3	4.7357	0.4116	3291.32	3291.526	1	1036.5	28.6%	2	Y.SVSYSWDKQVEDEDHMEVFPAGSSFPSTK.L	3
*	bob1-03.01420.01420.3	4.4386	0.2119	2338.13	2338.507	1	1067.9	37.5%	1	K.QVEDEDHMEVFPAGSSFPSTK.L	3
*	bob1-03.01428.01428.2	4.4525	0.4899	2341.19	2338.507	1	659.8	47.5%	2	K.QVEDEDHMEVFPAGSSFPSTK.L	2
*	bob1-07.02287.02287.2	4.1474	0.5369	1744.21	1744.985	1	1344.1	60.0%	8	K.KDDLTIVAHTFGLDAK.K	2
*	bob1-06.02692.02692.2	4.0111	0.4441	1617.25	1616.811	1	1608.0	75.0%	1	K.DDLTIVAHTFGLDAK.K	2
*	bob1-03.01406.01406.2	4.6348	0.4231	1917.33	1918.169	1	1852.1	70.0%	1	K.LNELIEKENEMLAQDK.L	2
*	bob1-06.02154.02154.2	4.0588	0.3315	1543.65	1543.76	1	1658.2	81.8%	1	R.KNTLEEYIYTLR.G	2
*	bob1-03.02168.02168.2	4.2622	0.2911	1415.33	1415.586	1	1631.5	85.0%	1	K.NTLEEYIYTLR.G	2
*	bob1-03.01238.01238.2	5.4385	0.4962	1784.37	1784.917	1	1631.2	76.7%	2	R.GKLEEEYAPFASDAEK.T	2
*	bob1-02.02126.02126.2	4.5143	0.422	1704.17	1702.814	1	1431.4	80.8%	3	K.AEEWLYDEGFDSIK.A	2
	bob1-07.02284.02284.2	3.8753	0.4699	1853.73	1854.156	1	1142.4	60.0%	1	K.YIAKYEELASLGNIIR.G	2 2
	bob1-02.02082.02082.2	4.3771	0.4208	1378.05	1378.568	1	1505.7	81.8%	4	K.YEELASLGNIIR.G	2 2
*	bob1-03.00566.00566.2	2.9365	0.2651	1138.11	1138.306	6	871.9	81.2%	1	R.YLAKEEEKK.Q	2

Similarities: HS79_YEAST(5:21)

IMD4_YEAST

45.0%

524

56394

8.2

(P50094) Probable inosine-5'-monophosphate dehydrogenase IMD4 (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01850.01850.2	4.4127	0.4588	1551.89	1552.697	1	1222.5	65.4%	3	K.DGLSVQELMDSTTR.G	2
*	bob1-06.03983.03983.2	3.5616	0.3675	2837.75	2839.261	1	374.3	34.6%	1	R.GGLTYNDFLVLPGLVNFPSSAVSLQTK.L	2
*	bob1-03.02576.02576.2	4.7588	0.4271	2480.43	2481.866	1	844.3	47.7%	8	K.MFENGFINSPIVISPTTTVGEVK.V	2
*	bob1-05.01468.01468.2	3.5812	0.4724	1516.27	1516.693	1	1544.5	73.1%	1	R.KFGFSGFPVTEDGK.C	2
	bob1-02.01884.01884.2	3.0116	0.324	1388.27	1388.519	1	1008.0	70.8%	1	K.FGFSGFPVTEDGK.C	2 2
*	bob1-03.01112.01112.1	2.0194	0.0805	844.58	845.03	2	257.4	71.4%	1	K.LVGLVTSR.D	1
*	bob1-06.03374.03374.2	5.6964	0.5834	2068.39	2069.331	1	2861.2	76.5%	6	R.DIQFLEDDSLVVSEVMTK.N	2
*	bob1-05.02955.02955.3	3.5863	0.3826	2070.11	2069.331	1	777.5	35.3%	1	R.DIQFLEDDSLVVSEVMTK.N	3
	bob1-03.02590.02590.2	5.8423	0.5346	1759.37	1760.059	1	2566.9	83.3%	36	K.LLIVDDNGNLVSMLSR.A	2 2
	bob1-02.02654.02654.2	5.0193	0.1503	1747.05	1746.958	1	1750.2	73.3%	8	K.ETFPDLEIIAGNVATR.E	2 2
	bob1-02.01468.01468.2	4.2827	0.5119	1473.23	1470.626	1	1173.5	75.0%	2	R.EQAANLIAAGADGLR.I	2 2 2 2
*2	bob1-06.03158.03158.2	2.8015	0.2103	3170.35	3171.622	1	313.2	23.3%	1	K.ALALGSSTVMMGGMLAGTTESPGEYFYKDGK.R	2 2 2
	bob1-02.01074.01074.1	1.9003	0.1849	1037.4	1038.222	3	451.9	61.1%	1	R.GMGSIDAMQK.T	1 1 1 1
	bob1-02.01076.01076.2	2.7273	0.131	1038.03	1038.222	1	1132.3	88.9%	1	R.GMGSIDAMQK.T	2 2 2 2
	bob1-04.01740.01740.3	4.8883	0.4156	2157.77	2158.37	1	2503.9	43.8%	1	R.YFSESDSVLVAQGVSGAVVDK.G	3 3 3 3
	bob1-04.01727.01727.2	5.8564	0.5861	2158.55	2158.37	1	2315.8	72.5%	10	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2 2
	bob1-06.02112.02112.2	4.0463	0.4391	2542.67	2543.833	1	704.8	43.8%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	2 2 2 2
	bob1-06.02106.02106.3	4.3979	0.4127	2545.01	2543.833	1	563.0	35.4%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	3 3 3 3
	bob1-06.01932.01932.2	5.0965	0.4666	2670.85	2672.007	1	1147.5	50.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	2 2 2 2
	bob1-06.01928.01928.3	4.2737	0.4126	2671.43	2672.007	1	641.2	32.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	3 3 3 3
	bob1-04.01086.01086.2	4.7136	0.4679	1941.65	1942.095	1	1024.3	52.9%	5	R.TASAQLEGGVHNLHSYEK.R	2 2 2

Similarities: IMD3_YEAST(14:7)
IMD2_YEAST(11:10)
O42831(8:13)
IMD1_YEAST(1:20)

U	RS0A_YEAST	13	33	45.0%	251	27893	4.7	(P32905) 40S ribosomal protein S0-A (Nucleic acid-binding protein NAB1A)
U	RS0B_YEAST	13	33	45.0%	251	27831	4.7	(P46654) 40S ribosomal protein S0-B (Nucleic acid-binding protein NAB1B)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-03.03214.03214.3	6.4167	0.454	2536.49	2536.847	1	1299.1	39.1%	5	L.PATFDLTPEDAQLLLAANTHLGAR.N	3
bob1-03.03218.03218.2	2.7359	0.1584	2265.61	2267.547	3	327.3	35.0%	1	T.FDLTPEDAQLLLAANTHLGAR.N	2
bob1-04.03155.03155.2	3.5475	0.4088	2119.75	2120.37	1	726.7	44.7%	2	F.DLTPEDAQLLLAANTHLGAR.N	2
bob1-04.03159.03159.2	4.119	0.3731	1891.59	1892.122	1	1032.4	55.9%	3	L.TPEDAQLLLAANTHLGAR.N	2
bob1-04.03160.03160.2	4.491	0.3633	1790.43	1791.017	1	2011.7	68.8%	3	T.PEDAQLLLAANTHLGAR.N	2
bob1-06.01859.01859.3	4.5195	0.3715	2820.05	2818.167	1	1348.8	35.4%	4	R.NVQVHQEPYVFNARPDGVHVINVGK.T	3
bob1-06.01607.01607.2	2.7095	0.1885	1722.75	1722.988	2	527.3	46.7%	2	Y.VFNARPDGVHVINVGK.T	2
bob1-03.02186.02186.2	3.5184	0.5485	1765.17	1766.048	1	499.2	62.5%	4	R.IIAAIPNPEDVVAISSR.T	2
bob1-03.02196.02196.1	2.6669	0.2721	1283.7	1284.412	1	539.6	59.1%	1	I.PNPEDVVAISSR.T	1
bob1-04.01015.01015.2	3.311	0.4328	1270.35	1270.434	1	726.0	66.7%	3	K.FAAHTGATPIAGR.F	2
bob1-03.01608.01608.2	2.6847	0.3045	1404.91	1404.565	2	209.8	63.6%	2	R.FTPGSFTNYITR.S	2
bob1-06.02374.02374.1	1.8051	0.2917	988.45	989.162	1	624.9	78.6%	1	K.HSIGLIWY.L	1
bob1-06.03299.03299.2	2.7942	0.3075	1817.17	1818.1	13	302.9	46.2%	2	R.TQPWSIMPDLYFYR.D	2

RL25_YEAST

44.0%

141

15626

10.1

(P04456) 60S ribosomal protein L25 (YL25) (RP61L)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01135.01135.2	4.0706	0.368	1448.09	1447.687	1	784.9	79.2%	1	K.VIEQPITSETAMK.K	2
*	bob1-07.01998.01998.2	3.205	0.3129	1707.47	1708.026	1	711.8	53.6%	1	K.KVEDGNILVFQVSMK.A	2
*	bob1-02.01486.01486.1	2.8589	0.2383	1107.53	1108.277	4	369.2	75.0%	1	K.ELYEVDVLK.V	1
*	bob1-06.01310.01310.2	3.1789	0.2802	1327.27	1327.57	1	600.1	59.1%	1	K.VNTLVRPNGTKK.A	2
*	bob1-02.01458.01458.2	4.7897	0.5166	1450.83	1451.576	1	2592.0	87.5%	1	R.LTADYDALDIANR.I	2

RS24_YEAST

43.3%

134

15198

10.5

(P26782) 40S ribosomal protein S24 (RP50)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01134.01134.2	3.0156	0.1942	1111.21	1111.373	3	800.0	83.3%	2	R.KVISNPLLAR.K	2
*	bob1-03.01296.01296.2	3.0068	0.2776	982.87	983.199	2	652.2	87.5%	1	K.VISNPLLAR.K	2
*	bob1-06.01684.01684.2	4.1079	0.1423	1452.49	1452.699	1	2080.0	86.4%	2	R.KQFVVDVLHPNR.A	2
*	bob1-04.01383.01383.2	3.1676	0.2628	1324.91	1324.525	1	1104.5	80.0%	1	K.QFVVDVLHPNR.A	2
*	bob1-02.00762.00762.2	2.8531	0.3558	1032.49	1032.142	2	1271.6	87.5%	1	R.ANVSKDELR.E	2
*	bob1-03.01511.01511.2	3.1718	0.1775	1326.53	1326.495	1	1128.8	72.7%	1	K.AEKDAVSVFGFR.T	2
*	bob1-02.01840.01840.1	2.3053	0.2658	999.27	998.126	150	167.3	56.2%	2	K.DAVSVFGFR.T	1
*	bob1-04.01744.01744.2	3.7247	0.2232	1540.33	1541.744	1	1114.9	71.4%	2	K.SVGFGLVYNSVAEAK.K	2

SSB1_YEAST

43.2%

294

32990

5.7

(P10080) Single-stranded nucleic acid-binding protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.03075.03075.2	4.8029	0.4512	2080.23	2079.354	1	1265.7	58.8%	2	K.QLFVEEFGDEVSVEIPIK.E	2
*	bob1-06.01832.01832.2	5.0113	0.4588	2088.81	2089.309	1	1581.2	65.6%	1	K.FPTKIDFDNIKENYDTK.V	2
*	bob1-03.01222.01222.2	3.8912	0.3625	1615.33	1615.737	1	1231.0	79.2%	1	K.IDFDNIKENYDTK.V	2
*	bob1-03.00555.00555.2	2.6914	0.2522	1260.15	1259.463	6	350.6	66.7%	1	R.EKIPLDQMER.S	2
*	bob1-04.01318.01318.2	4.5061	0.3892	1539.53	1539.772	1	1432.7	79.2%	2	R.SKDTLYINNVPFK.A	2
*	bob1-06.02596.02596.2	6.1196	0.4938	2414.51	2415.677	1	2410.8	64.3%	5	K.ATKEEVAEFFGTDADSISLPMR.K	2
*	bob1-06.02598.02598.3	3.7834	0.306	2415.32	2415.677	1	1276.3	36.9%	2	K.ATKEEVAEFFGTDADSISLPMR.K	3
*	bob1-03.02544.02544.2	5.4737	0.5422	2116.23	2115.319	1	2031.7	66.7%	5	K.EEVAEFFGTDADSISLPMR.K	2
*	bob1-06.02455.02455.2	3.6893	0.4999	2242.93	2243.493	1	641.1	44.7%	1	K.EEVAEFFGTDADSISLPMRK.M	2
*	bob1-05.01879.01879.2	5.291	0.5625	1816.07	1816.036	1	2009.6	71.9%	3	R.GMAFVTFSGENVDIEAK.A	2
*	bob1-04.01776.01776.3	4.9482	0.3239	3345.74	3346.494	1	1048.4	25.9%	3	R.ELTVDVAVIRPENDEEEIEQETGSEEKQE.-	3

RS7B_YEAST

43.2%

190

21634

9.9

(P48164) 40S ribosomal protein S7-B

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01499.01499.2	2.6692	0.3466	1626.37	1626.891	2	295.6	46.4%	1	K.ILSQAPSELELQVAK.T	2
*	bob1-02.01626.01626.2	4.1025	0.3435	1466.39	1466.628	1	1836.6	79.2%	1	K.TFIDLESSSPELK.A	2
*	bob1-02.03480.03480.2	3.8616	0.453	1460.45	1460.8	1	748.2	61.5%	1	K.ALVLFVPVPALSAY.H	2
	bob1-04.01171.01171.2	3.3295	0.2849	984.89	985.174	1	629.0	92.9%	1	R.HVIFLAER.R	2 2
*	bob1-02.02387.02387.2	4.059	0.3351	1576.67	1577.876	1	713.3	65.4%	3	K.VLEDMVFPTEIVGK.R	2
	bob1-03.02623.02623.1	1.9857	0.1504	890.67	891.055	1	648.9	71.4%	1	V.FPTEIVGK.R	1 1
	bob1-02.00986.00986.1	2.6747	0.1946	1008.43	1009.104	1	775.3	78.6%	1	K.DVQQIDYK.L	1 1
	bob1-02.01210.01210.2	3.3066	0.3324	1198.81	1199.349	1	919.6	83.3%	1	K.LESFQAVYNK.L	2 2

Similarities: RS7A_YEAST(4:4)

RS16_YEAST

43.0%

142

15716

10.3

(P40213) 40S ribosomal protein S16 (RP61R)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.02411.02411.2	3.5713	0.4575	1636.89	1637.917	1	924.3	60.7%	7	K.VNGSPITLVEPEILR.F	2
*	bob1-03.02496.02496.2	4.2182	0.406	1358.65	1359.649	1	1230.1	86.4%	2	K.VYEPLLLVGLDK.F	2
*	bob1-04.01000.01000.2	4.1338	0.5243	1445.23	1444.633	1	970.4	65.4%	1	R.VTGGGHVSQVYAIR.Q	2
*	bob1-03.00546.00546.2	3.6635	0.3566	1481.25	1481.646	1	1303.5	77.3%	1	K.YVDEQSKNELKK.A	2
*	bob1-02.01170.01170.1	1.8251	0.1495	888.49	889.04	2	275.0	71.4%	1	R.TLLIADSR.R	1

RLA2_YEAST

42.5%

106

10746

4.0

(P05319) 60S acidic ribosomal protein P2-alpha (A2) (L44) (L12EIB)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.02379.02379.2	4.7676	0.5453	1980.85	1981.256	1	2161.4	66.7%	7	K.YLAAYLLLNAAGNTPDATK.I	2
*	bob1-02.01176.01176.2	3.3151	0.405	1399.09	1399.587	1	920.8	61.5%	1	Y.LLLNAAGNTPDATK.I	2
*	bob1-03.01764.01764.2	4.3807	0.466	1545.59	1545.727	1	1507.0	76.9%	1	K.AILESVGIEIEDEK.V	2
*	bob1-02.01183.01183.1	3.0652	0.2908	1334.53	1334.423	1	761.9	63.6%	1	K.SVDELITEGNEK.L	1

RS7A_YEAST

42.3%

189

21491

9.8

(P26786) 40S ribosomal protein S7-A (RP30)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.04210.04210.2	4.9873	0.5533	3084.35	3085.478	1	928.4	38.9%	2	K.ILSQAPTELELQVAQAFVELENSSPELK.A	2
*	bob1-04.03519.03519.3	5.3865	0.3985	3085.58	3085.478	1	976.2	30.6%	4	K.ILSQAPTELELQVAQAFVELENSSPELK.A	3
	bob1-04.01171.01171.2	3.3295	0.2849	984.89	985.174	1	629.0	92.9%	1	R.HVIFLAER.R	2 2
*	bob1-02.02799.02799.2	4.6334	0.4466	1572.81	1573.87	1	1109.6	80.8%	13	K.ILEDLVFPTEIVGK.R	2
*	bob1-07.02458.02458.2	3.0428	0.2168	1729.41	1730.057	2	449.1	50.0%	1	K.ILEDLVFPTEIVGKR.V	2
	bob1-03.02623.02623.1	1.9857	0.1504	890.67	891.055	1	648.9	71.4%	1	V.FPTEIVGK.R	1 1
	bob1-02.00986.00986.1	2.6747	0.1946	1008.43	1009.104	1	775.3	78.6%	1	K.DVQQIDYK.L	1 1
	bob1-02.01210.01210.2	3.3066	0.3324	1198.81	1199.349	1	919.6	83.3%	1	K.LESFQAVYNK.L	2 2
*	bob1-02.01674.01674.1	1.8414	0.2119	1299.45	1300.454	31	69.6	45.0%	1	K.QIVFEIPSETH.-	1
*	bob1-02.01655.01655.2	3.0153	0.2966	1299.87	1300.454	2	597.3	70.0%	2	K.QIVFEIPSETH.-	2

Similarities: RS7B_YEAST(4:6)

IF2B_YEAST

42.1%

285

31574

9.5

(P09064) Eukaryotic translation initiation factor 2 beta subunit (eIF-2-beta)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01315.01315.2	3.2522	0.3669	1362.63	1361.494	3	370.1	70.8%	1	K.VIPDDFDAAVNGK.E	2
*	bob1-03.01294.01294.2	3.3877	0.3437	1451.69	1451.576	1	874.8	69.2%	1	K.ENGSGDDLFAGLKK.K	2
*	bob1-06.02914.02914.2	4.5058	0.3789	2688.75	2689.887	1	583.9	40.0%	2	K.SVSADAEAEKEPTDDIAEALGELSLK.K	2
*	bob1-06.02912.02912.3	4.5369	0.3115	2690.42	2689.887	1	1696.3	38.0%	2	K.SVSADAEAEKEPTDDIAEALGELSLK.K	3
*	bob1-06.02730.02730.3	6.7447	0.5134	2818.43	2818.061	1	1466.0	30.8%	5	K.SVSADAEAEKEPTDDIAEALGELSLKK.K	3
*	bob1-06.02931.02931.2	3.6271	0.3841	2503.09	2503.676	3	305.2	32.6%	1	V.SADAEAEKEPTDDIAEALGELSLK.K	2
*	bob1-02.01019.01019.1	1.9524	0.082	997.46	998.034	3	387.8	62.5%	1	K.DSSVDAFEK.E	1
*	bob1-03.01398.01398.2	3.1856	0.225	1439.67	1439.562	1	1014.4	70.8%	1	K.DSSVDAFEKELAK.A	2
*	bob1-06.02495.02495.3	4.7372	0.5091	3664.16	3663.931	1	641.7	22.8%	1	K.AGLDNVDAESKEGTPSANSSIQQEVGLPYSELLSR.F	3
*	bob1-02.02380.02380.2	3.6343	0.2703	2563.99	2563.781	1	420.8	34.8%	1	K.EGTPSANSSIQQEVGLPYSELLSR.F	2
*	bob1-03.01627.01627.1	1.8662	0.0988	810.51	809.987	2	320.0	80.0%	1	R.FFNILR.T	1
*	bob1-02.02000.02000.2	3.5549	0.335	1378.95	1379.553	1	1332.7	81.8%	2	K.TIFSNIQDIAEK.L	2

PABP_YEAST

42.0%

576

64213

6.0

(P04147) Polyadenylate-binding protein, cytoplasmic and nuclear (Poly(A)-binding protein) (PABP) (ARS consensus binding protein ACBP-67) (Polyadenylate tail-binding protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01203.01203.2	5.1989	0.4382	1759.43	1759.867	1	2140.3	82.1%	1	K.TAEQLENLNIQDDQK.Q	2
*	bob1-06.01674.01674.2	4.7206	0.4835	1914.45	1915.029	1	1072.2	62.5%	3	K.TSLGYAYVNFNDHEAGR.K	2
*	bob1-02.01306.01306.2	3.6219	0.315	1290.11	1290.502	1	1436.4	80.0%	1	K.AIEQLNYTPIK.G	2
*	bob1-05.03090.03090.2	5.109	0.5959	1764.43	1763.985	1	1319.2	70.0%	6	K.ALYDTFSVFGDILSSK.I	2
*	bob1-05.01454.01454.2	4.3393	0.3381	1524.75	1525.66	1	1158.5	73.1%	3	K.GFGFVHFEEEGAAK.E	2
*	bob1-03.01039.01039.1	2.0742	0.2034	1108.52	1109.27	2	357.7	62.5%	1	K.AHYTNLYVK.N	1
*	bob1-02.02034.02034.2	6.0132	0.5333	2014.25	2015.141	1	2681.2	75.0%	2	K.NINSETTDEQFQELFAK.F	2
*	bob1-03.01291.01291.2	4.0741	0.377	1635.07	1634.827	1	969.5	66.7%	1	K.FGPIVSASLEKDADGK.L	2
*	bob1-02.01507.01507.2	2.5451	0.2351	1067.53	1068.261	2	562.9	93.8%	1	K.YQGVNLFVK.N	2
*	bob1-05.01998.01998.3	3.7211	0.4145	2787.35	2787.948	1	456.0	31.2%	1	K.NLDDSVDDEKLEEEFAPYGTITSAK.V	3
*	bob1-04.02002.02002.2	4.4726	0.4838	2787.81	2787.948	1	1398.1	50.0%	6	K.NLDDSVDDEKLEEEFAPYGTITSAK.V	2
*	bob1-05.01314.01314.2	4.3872	0.3761	1869.47	1870.205	1	824.1	59.4%	3	K.NQQIVAGKPLYVAIAQR.K	2
*	bob1-05.01316.01316.3	5.4614	0.3975	1870.73	1870.205	1	2362.6	54.7%	2	K.NQQIVAGKPLYVAIAQR.K	3
*	bob1-02.01023.01023.2	4.1053	0.3181	1143.01	1143.288	1	1793.0	88.9%	1	R.SQLAQQIQAR.N	2
*	bob1-05.03034.03034.3	5.1065	0.4571	3203.99	3201.764	1	1145.3	29.2%	4	R.YQQATAAAAAAAAGMPGQFMPPMFYGVMPPR.G	3
*	bob1-03.01607.01607.2	3.7145	0.403	2098.97	2099.448	1	283.5	47.4%	1	R.GVPFNGPNPQQMNPMGGMPK.N	2
*	bob1-03.01243.01243.2	3.1064	0.2737	1542.11	1542.737	1	530.0	60.7%	2	R.NGPVYGVPPQGGFPR.N	2

RLA4_YEAST

41.8%

110

11050

4.1

(P02400) 60S acidic ribosomal protein P2-beta (L45) (YL44C) (YPA1) (L12EIA)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02830.02830.2	5.0022	0.5052	2220.77	2220.574	1	1151.4	54.8%	5	K.YLAAYLLLVQGGNAAPSAADIK.A	2
*	bob1-02.01439.01439.2	4.6328	0.5472	1639.45	1638.905	1	1205.2	62.5%	1	Y.LLLVQGGNAAPSAADIK.A	2
*	bob1-02.01707.01707.2	3.8383	0.2959	1203.25	1203.378	1	1602.7	90.0%	1	R.INELLSSLEGK.G	2
*	bob1-02.01491.01491.2	3.836	0.2411	1274.11	1274.414	1	1760.1	81.8%	1	K.GSLEEIIAEGQK.K	2
*	bob1-03.01331.01331.2	3.9961	0.2329	1402.19	1402.588	1	1218.5	70.8%	1	K.GSLEEIIAEGQKK.F	2

R22A_YEAST

41.7%

120

13562

6.2

(P05749) 60S ribosomal protein L22-A (YL31) (RP4)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02095.02095.2	5.2876	0.5664	2333.01	2333.513	1	832.9	50.0%	10	K.TFTVDVSSPTENGVFDPASYAK.Y	2
*	bob1-03.02112.02112.3	4.3776	0.5156	2687.45	2688.992	1	945.9	29.6%	1	K.VEGAVGNLGNAVTVTEDGTVVTVVSTAK.F	3
*	bob1-05.02026.02026.2	4.9367	0.3771	2688.09	2688.992	1	786.5	40.7%	2	K.VEGAVGNLGNAVTVTEDGTVVTVVSTAK.F	2

U	R141_YEAST	4	4	40.4%	136	14405	10.7	(P06367) 40S ribosomal protein S14-A (RP59A)
U	R142_YEAST	4	4	40.1%	137	14519	10.5	(P39516) 40S ribosomal protein S14-B (RP59B)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-07.02147.02147.2	4.7186	0.509	2016.17	2015.23	1	1379.3	58.8%	1	R.IYASFNDTFVHVTDLSGK.E	2
bob1-03.01528.01528.2	4.8077	0.3749	2181.17	2181.382	1	1772.6	57.5%	1	K.ADRDESSPYAAMLAAQDVAAK.C	2
bob1-02.01784.01784.2	4.3603	0.3376	1840.81	1839.027	1	1203.9	55.9%	1	R.DESSPYAAMLAAQDVAAK.C	2
bob1-03.01132.01132.2	3.1621	0.2163	1742.87	1742.927	1	804.1	60.0%	1	R.IGRIEDVTPVPSDSTR.K	2

RL30_YEAST

39.4%

104

11284

9.8

(P14120) 60S ribosomal protein L30 (YL32) (RP73)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01695.01695.2	4.5443	0.3975	1294.33	1294.624	1	1977.4	86.4%	5	K.LIIIAANTPVLR.K	2
*	bob1-07.01718.01718.2	2.7764	0.1987	1423.13	1422.798	1	743.2	62.5%	1	K.LIIIAANTPVLRK.S	2
*	bob1-04.01358.01358.2	4.966	0.4139	1462.49	1462.701	1	2046.3	90.9%	2	R.KSELEYYAMLSK.T	2
*	bob1-02.01406.01406.2	4.0703	0.4777	1817.19	1817.996	1	1168.8	65.6%	1	K.VYYFQGGNNELGTAVGK.L	2

U	R17A_YEAST	7	8	39.0%	136	15788	10.5	(P02407) 40S ribosomal protein S17-A (RP51A)
U	R17B_YEAST	7	8	39.0%	136	15803	10.5	(P14127) 40S ribosomal protein S17-B (RP51B)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-03.01204.01204.2	3.1446	0.2817	1235.87	1236.414	1	1051.4	88.9%	1	K.LTLDFQTNKR.L	2
bob1-03.01475.01475.2	3.9969	0.2946	1720.45	1720.92	1	649.7	71.4%	2	R.KDQYVPEVSALDLSR.S	2
bob1-02.01744.01744.2	3.9496	0.3809	1591.77	1592.746	1	1079.3	84.6%	1	K.DQYVPEVSALDLSR.S	2
bob1-02.01752.01752.1	2.5528	0.2391	1086.53	1087.218	1	530.8	72.2%	1	V.PEVSALDLSR.S	1
bob1-02.01278.01278.2	4.2774	0.3576	1703.35	1703.847	1	1057.4	66.7%	1	R.SNGVLNVDNQTSDLVK.S	2
bob1-03.01495.01495.1	3.0358	0.2586	1296.79	1297.541	1	211.3	59.1%	1	K.LPLSVINVSAQR.D	1
bob1-03.01482.01482.2	4.1431	0.477	1297.49	1297.541	1	1505.1	86.4%	1	K.LPLSVINVSAQR.D	2

RS20_YEAST

38.8%

121

13907

9.5

(P38701) 40S ribosomal protein S20

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01036.01036.2	5.4034	0.2039	1885.45	1886.069	1	2498.1	75.0%	1	K.EKVEEQEQQQQQIIK.I	2
*	bob1-02.00974.00974.2	5.0532	0.2218	1628.43	1628.779	1	2502.0	83.3%	1	K.VEEQEQQQQQIIK.I	2
*	bob1-02.01114.01114.2	2.821	0.1479	1230.75	1231.392	1	868.1	90.0%	1	K.QLENVSSNIVK.N	2
*	bob1-02.01227.01227.2	2.7851	0.3137	1115.83	1116.234	1	718.8	85.7%	1	K.TWETYEMR.I	2
*	bob1-02.01958.01958.2	3.8405	0.1212	1388.21	1388.647	1	1457.6	81.8%	3	R.YIDLEAPVQIVK.R	2
*	bob1-05.01518.01518.2	3.6123	0.3654	1544.29	1544.834	1	1146.2	79.2%	1	R.YIDLEAPVQIVKR.I	2

RS2_YEAST

38.3%

253

27319

10.4

(P25443) 40S ribosomal protein S2 (S4) (YS5) (RP12) (Omnipotent suppressor protein SUP44)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02491.02491.2	2.6016	0.2519	1215.99	1216.42	1	913.5	77.8%	1	K.ITTIEEIFLH.S	2
*	bob1-06.01670.01670.2	4.6842	0.5537	1623.41	1621.877	1	1611.2	75.0%	3	K.AVVVVGDSNGHVGLGIK.T	2
*	bob1-04.01216.01216.2	4.7308	0.5018	1730.35	1730.921	1	1296.6	76.7%	1	R.GYWGTNLGQPHSLATK.T	2
*	bob1-06.01838.01838.2	5.4066	0.5134	1963.63	1964.226	1	1933.3	73.5%	2	K.KLLQLAGVEDVYTQSNGK.T	2
*	bob1-04.01634.01634.2	5.8706	0.5369	1835.77	1836.052	1	2004.2	71.9%	4	K.LLQLAGVEDVYTQSNGK.T	2
*	bob1-06.04032.04032.3	4.0418	0.216	3907.61	3907.369	1	664.5	21.4%	1	F.VAIGNTYGFLTPNLWAEQPLPVSPLDIYSDEASAQK.K	3

HS77_YEAST

37.2%

654

70628

5.6

(P12398) Heat shock protein SSC1, mitochondrial precursor (Endonuclease SCEI 75 kDa subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02514.02514.2	5.9793	0.5795	2260.67	2261.596	1	1699.0	59.1%	9	K.VQGSVIGIDLGTTNSAVAIMEGK.V	2
*	bob1-02.01467.01467.2	3.8514	0.4183	1533.35	1532.737	1	599.2	65.4%	2	R.QAVVNPENTLFATK.R	2
*	bob1-04.01247.01247.2	3.6958	0.339	1688.39	1688.924	1	820.6	64.3%	1	R.QAVVNPENTLFATKR.L	2
*	bob1-02.01863.01863.2	4.7853	0.4443	1680.37	1680.901	1	1231.5	73.3%	4	R.GQTYSPAQIGGFVLNK.M	2
*	bob1-02.01498.01498.2	3.1543	0.2028	1680.93	1681.845	1	371.6	57.1%	1	K.NAVVTVPAYFNDSQR.Q	2
	bob1-02.01506.01506.1	2.2569	0.2771	1097.43	1098.16	2	280.7	68.8%	2	V.PAYFNDSQR.Q	1 1 1 1 1
*	bob1-02.01788.01788.1	3.025	0.3761	1254.71	1255.46	1	309.9	63.6%	1	K.DAGQIVGLNVLR.V	1
*	bob1-02.01778.01778.2	4.1547	0.397	1255.09	1255.46	1	1367.5	81.8%	1	K.DAGQIVGLNVLR.V	2
*	bob1-02.01686.01686.2	4.1831	0.4254	1646.51	1646.881	1	982.2	66.7%	1	R.VVNEPTAAALAYGLEK.S	2
*	bob1-06.02346.02346.2	5.1562	0.4915	2123.83	2124.271	1	1553.8	66.7%	5	K.STNGDTHLGGEDFDIYLLR.E	2
*	bob1-06.02350.02350.3	3.9301	0.3992	2124.29	2124.271	1	1162.3	38.9%	1	K.STNGDTHLGGEDFDIYLLR.E	3
*	bob1-03.01115.01115.2	4.3869	0.4209	1538.19	1538.654	1	1676.2	79.2%	1	R.FKTETGIDLENDR.M	2
*	bob1-02.01620.01620.2	3.7754	0.3983	1318.21	1318.556	1	1413.2	77.3%	1	R.AQFETLTAPLVK.R	2
*	bob1-04.01340.01340.2	3.2675	0.348	1474.25	1474.743	1	979.8	70.8%	1	R.AQFETLTAPLVKR.T	2
*	bob1-03.02724.02724.2	5.176	0.4411	2009.99	2008.251	1	1522.4	65.8%	7	K.DAGLSTSDISEVLLVGGMSR.M	2
	bob1-03.02059.02059.2	4.6027	0.4898	1508.79	1509.832	1	672.0	64.3%	7	K.LIGNFTLAGIPPAPK.G	2 2
*	bob1-05.02398.02398.3	3.8756	0.3119	2711.18	2711.868	1	1299.0	31.0%	1	K.DSSITVAGSSGLSENEIEQMVNDAEK.F	3
*	bob1-04.02440.02440.2	4.1148	0.4459	2711.69	2711.868	1	887.1	40.0%	2	K.DSSITVAGSSGLSENEIEQMVNDAEK.F	2
*2	bob1-03.01503.01503.2	5.3733	0.5617	2011.89	2010.122	1	1737.4	67.6%	2	K.ADQLANDTENSLKEFEGK.V	2 2
*	bob1-03.00938.00938.2	3.1716	0.1928	1060.31	1060.239	1	1020.4	87.5%	1	K.VRDQITSLK.E	2
*	bob1-02.01034.01034.2	3.7439	0.2848	1401.73	1402.501	1	838.0	79.2%	1	R.VQGGEEVNAEELK.T	2

Similarities: HS71_YEAST(1:20)
HS72_YEAST(1:20)
HS74_YEAST(1:20)
HS73_YEAST(1:20)
HS7E_YEAST(2:19)

ODO1_YEAST

37.0%

1014

114416

7.2

(P20967) 2-oxoglutarate dehydrogenase E1 component, mitochondrial precursor (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.03348.03348.3	4.1446	0.3838	3072.05	3071.342	1	1267.9	30.8%	2	G.LATTGTDNFLSTSNATYIDEMYQAWQK.D	3
*	bob1-07.01966.01966.2	3.2734	0.5082	1637.63	1638.776	1	630.1	65.4%	1	K.DPSSVHVSWDAYFK.N	2
*	bob1-05.01482.01482.2	4.2626	0.5159	1456.29	1456.641	1	1722.8	88.5%	2	K.AHIDPLGISFGSNK.N	2
*	bob1-02.02428.02428.2	2.8828	0.3622	1954.51	1955.174	1	358.6	50.0%	1	K.NNPVPPELTLDYYGFSK.H	2
*	bob1-06.01887.01887.2	5.2052	0.3495	1787.77	1788.057	1	2247.7	73.3%	1	K.HDLDKEINLGPGILPR.F	2
*	bob1-06.01904.01904.3	4.3614	0.3749	1788.47	1788.057	1	1838.3	51.7%	1	K.HDLDKEINLGPGILPR.F	3
*	bob1-04.01390.01390.2	3.9107	0.3131	2008.03	2009.223	1	761.5	56.7%	1	R.ERIEIPEPYQYTVDQK.R	2
*	bob1-02.01588.01588.2	3.3731	0.4389	1722.69	1723.92	1	791.1	73.1%	2	R.IEIPEPYQYTVDQK.R	2
*	bob1-07.03118.03118.2	3.6241	0.4349	1618.31	1618.827	1	1150.2	65.4%	3	R.LTWATSFESFLSTK.F	2
*	bob1-03.02628.02628.2	4.4561	0.4572	1448.33	1445.699	1	1888.7	76.9%	5	R.FGLEGLESVVPGIK.T	2
*	bob1-07.02691.02691.2	4.5552	0.4947	1725.31	1726.001	1	1856.7	73.3%	1	R.SVELGVEDIVLGMAHR.G	2
*	bob1-06.01622.01622.2	3.8076	0.386	1227.35	1227.453	1	1603.2	90.0%	2	R.GRLNVLSNVVR.K	2
*	bob1-03.01415.01415.2	4.0496	0.3507	1325.75	1326.492	1	1346.0	85.0%	2	R.KPNESIFSEFK.G	2
*	bob1-06.02318.02318.2	4.7694	0.5289	2508.07	2508.837	1	823.0	47.7%	2	K.YVNLSLVANPSHLESQDPVVLGR.T	2
*	bob1-02.01188.01188.1	2.1434	0.2673	1053.49	1054.185	2	442.7	62.5%	1	K.SVIDVYTEK.L	1
*	bob1-05.03214.03214.2	4.2692	0.4214	1584.05	1584.771	1	1464.6	90.9%	7	K.WVWNLFEDAFEK.A	2
*	bob1-03.02446.02446.2	2.9029	0.3283	1338.07	1338.505	1	872.1	75.0%	2	R.EWLTAAWEGFK.S	2
*	bob1-04.01467.01467.2	3.8471	0.4749	2218.69	2219.497	1	395.1	47.4%	2	K.ELATEILPHEPTNVPESTLK.E	2
*	bob1-04.01475.01475.3	3.9155	0.4379	2219.12	2219.497	1	1432.2	43.4%	1	K.ELATEILPHEPTNVPESTLK.E	3
*	bob1-06.02130.02130.3	5.2476	0.3863	2647.34	2646.998	1	1135.9	33.7%	1	K.ELATEILPHEPTNVPESTLKELGK.V	3
*	bob1-04.01416.01416.2	3.624	0.4366	1515.29	1515.709	1	553.4	70.8%	1	K.VLSSWPEGFEVHK.N	2
*	bob1-06.04204.04204.2	5.4445	0.5013	3020.47	3021.31	1	1538.9	44.6%	2	K.SIETGEGIDWATGEALAFGTLVLDGQNVR.V	2
*	bob1-05.03500.03500.3	5.6931	0.3822	3022.88	3021.31	1	1146.2	29.5%	4	K.SIETGEGIDWATGEALAFGTLVLDGQNVR.V	3
*	bob1-06.01799.01799.2	5.0763	0.4036	2609.07	2609.855	1	1423.5	50.0%	1	R.HAVLHDQQSEAIYTPLSTLNNEK.A	2
*	bob1-06.01767.01767.3	4.0908	0.3072	2610.29	2609.855	1	1107.5	35.2%	3	R.HAVLHDQQSEAIYTPLSTLNNEK.A	3
*	bob1-06.01771.01771.3	3.9907	0.2485	2250.59	2251.42	2	750.8	35.7%	1	R.SGLVLSLPHGYDGQGPEHSSGR.L	3
*	bob1-06.01746.01746.2	4.3323	0.4377	2251.35	2251.42	1	675.3	45.2%	1	R.SGLVLSLPHGYDGQGPEHSSGR.L	2
*	bob1-07.01919.01919.2	4.167	0.4253	1542.41	1542.862	1	1881.9	84.6%	1	R.LVLLSGQVYTALHK.R	2
*	bob1-03.02004.02004.2	2.7306	0.2708	1128.31	1128.316	1	717.6	81.2%	1	K.IEQLHPFPF.A	2
*	bob1-07.02094.02094.2	2.6402	0.2652	1596.23	1596.872	3	269.0	50.0%	2	K.IEQLHPFPFAQLR.D	2
*	bob1-03.01471.01471.2	3.3893	0.4453	1373.15	1373.549	1	1146.6	77.3%	1	K.SLHLAEEDAFLK.D	2

IMD2_YEAST

36.3%

523

56530

8.5

(P38697) Inosine-5'-monophosphate dehydrogenase IMD2 (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.04131.04131.2	2.7021	0.3343	2885.03	2886.271	3	235.8	28.8%	1	R.GGLTYNDFLILPGLVDFASSEVSLQTK.L	2
	bob1-06.02071.02071.2	4.1738	0.3418	2708.17	2707.056	1	1023.6	41.7%	1	R.VKNYENGFINNPIVISPTTTVGEAK.S	2 2 2
	bob1-02.02146.02146.2	5.2567	0.5352	2478.95	2479.749	1	1056.3	52.3%	7	K.NYENGFINNPIVISPTTTVGEAK.S	2 2 2
	bob1-04.02702.02702.2	5.7511	0.545	2094.49	2095.372	1	2141.4	73.5%	17	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
	bob1-02.01690.01690.2	6.121	0.6116	1941.23	1942.177	1	1820.6	66.7%	4	K.NPVTGAQGITLSEGNEILK.K	2 2 2
	bob1-04.01338.01338.2	5.7855	0.515	2069.73	2070.351	1	1943.3	65.8%	4	K.NPVTGAQGITLSEGNEILKK.I	2 2 2
	bob1-04.01339.01339.3	3.8369	0.4015	2070.53	2070.351	1	520.7	35.5%	2	K.NPVTGAQGITLSEGNEILKK.I	3 3 3
	bob1-04.01348.01348.2	3.7904	0.4716	1760.13	1759.998	1	845.9	59.4%	1	V.TGAQGITLSEGNEILKK.I	2 2 2
	bob1-02.01468.01468.2	4.2827	0.5119	1473.23	1470.626	1	1173.5	75.0%	2	R.EQAANLIAAGADGLR.I	2 2 2 2
2	bob1-06.03158.03158.2	2.8015	0.2103	3170.35	3171.579	1	313.2	23.3%	1	K.ALALGSSTVMMGGMLAGTTESPGEYFYQDGK.R	2 2 2
	bob1-02.01074.01074.1	1.9003	0.1849	1037.4	1038.222	3	451.9	61.1%	1	R.GMGSIDAMQK.T	1 1 1 1
	bob1-02.01076.01076.2	2.7273	0.131	1038.03	1038.222	1	1132.3	88.9%	1	R.GMGSIDAMQK.T	2 2 2 2
	bob1-04.01740.01740.3	4.8883	0.4156	2157.77	2158.37	1	2503.9	43.8%	1	R.YFSESDSVLVAQGVSGAVVDK.G	3 3 3 3
	bob1-04.01727.01727.2	5.8564	0.5861	2158.55	2158.37	1	2315.8	72.5%	10	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2 2
	bob1-06.02112.02112.2	4.0463	0.4391	2542.67	2543.833	1	704.8	43.8%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	2 2 2 2
	bob1-06.02106.02106.3	4.3979	0.4127	2545.01	2543.833	1	563.0	35.4%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	3 3 3 3
	bob1-06.01932.01932.2	5.0965	0.4666	2670.85	2672.007	1	1147.5	50.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	2 2 2 2
	bob1-06.01928.01928.3	4.2737	0.4126	2671.43	2672.007	1	641.2	32.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	3 3 3 3
	bob1-04.01086.01086.2	4.7136	0.4679	1941.65	1942.095	1	1024.3	52.9%	5	R.TASAQLEGGVHNLHSYEK.R	2 2 2

Similarities: IMD3_YEAST(18:1)
IMD4_YEAST(11:8)
O42831(8:11)
IMD1_YEAST(8:11)

ODO2_YEAST

35.9%

463

50431

8.9

(P19262) Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.61) (E2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01746.01746.2	4.0094	0.3308	2104.67	2105.408	1	789.9	60.5%	5	F.KSTSIEVPPMAESLTEGSLK.E	2
*	bob1-05.01724.01724.3	5.4017	0.4971	2105.12	2105.408	1	1248.0	39.5%	1	F.KSTSIEVPPMAESLTEGSLK.E	3
*	bob1-06.02228.02228.2	4.2427	0.3671	2626.09	2626.979	1	365.5	43.5%	1	F.KSTSIEVPPMAESLTEGSLKEYTK.N	2
*	bob1-06.02206.02206.3	5.1066	0.4267	2626.31	2626.979	1	1558.2	40.2%	3	F.KSTSIEVPPMAESLTEGSLKEYTK.N	3
*	bob1-02.02155.02155.2	2.9267	0.3685	1976.13	1977.234	1	303.0	50.0%	2	K.STSIEVPPMAESLTEGSLK.E	2
*	bob1-06.02202.02202.2	3.09	0.2841	2993.37	2994.112	1	358.3	29.3%	1	V.EPGEAPAEGSGESKPEPTEQAEPSQGVAAR.E	2
*	bob1-06.02192.02192.2	4.1738	0.4353	2863.81	2864.996	1	457.6	33.9%	1	E.PGEAPAEGSGESKPEPTEQAEPSQGVAAR.E	2
*	bob1-03.00643.00643.2	3.5031	0.3263	1455.43	1455.695	1	1080.9	79.2%	1	K.KEAAPKKEVTEPK.K	2
*	bob1-02.01551.01551.2	4.1471	0.5499	1745.85	1745.932	1	828.2	70.0%	4	K.AQEPPVASNSFTPFPR.T	2
*	bob1-06.03171.03171.2	5.7963	0.5847	2676.67	2677.976	1	1692.8	50.0%	4	K.ESQNTAASLTTFNEVDMSALMEMR.K	2
*	bob1-05.02510.02510.2	2.9801	0.3167	1034.01	1034.261	1	1600.2	100.0%	2	K.FGFMGLFSK.A	2
*	bob1-04.02555.02555.1	2.1	0.0923	1034.56	1034.261	1	649.5	68.8%	1	K.FGFMGLFSK.A	1
*	bob1-02.01640.01640.2	4.6669	0.4395	1831.25	1831.035	1	1392.3	78.1%	2	K.DIPAVNGAIEGDQIVYR.D	2
*	bob1-03.02554.02554.2	5.1952	0.3869	1802.31	1801.991	1	2071.7	76.7%	10	R.NAESLSVLDIENEIVR.L	2
*	bob1-03.02536.02536.1	1.8884	0.1153	1286.73	1287.456	7	208.0	55.0%	1	L.SVLDIENEIVR.L	1
*	bob1-03.00994.00994.2	2.9243	0.4056	1455.25	1455.657	1	646.9	66.7%	1	K.ERPVTVNGQIVSR.P	2
*	bob1-04.01272.01272.2	3.2815	0.4316	1978.67	1978.335	1	714.9	56.2%	1	K.ERPVTVNGQIVSRPMMY.L	2

RM01_YEAST

35.4%

285

30996

10.0

(Q04599) 60S ribosomal protein L1, mitochondrial precursor

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01070.01070.2	3.6005	0.4872	1867.53	1868.069	1	348.7	50.0%	1	Y.ADDYKPAAMSSNAPSLTK.D	2
*	bob1-06.01527.01527.2	3.3094	0.3456	1532.69	1532.841	1	488.8	57.7%	1	K.RPATASPLYMPVTK.A	2
*	bob1-06.01743.01743.2	3.278	0.496	1627.97	1628.912	1	556.6	53.3%	1	R.GTAPLSGSVTFPKPLR.Y	2
*	bob1-03.02676.02676.2	3.0967	0.0951	1634.09	1633.932	6	785.4	46.7%	1	Y.PNHLIGGADLVAKIKS.G	2
*	bob1-04.03414.03414.2	3.1878	0.4331	2239.45	2240.49	1	772.1	45.0%	2	K.GTVSDDISSLLQESLGSMPFR.Q	2
*	bob1-03.01932.01932.2	2.6362	0.0998	1617.29	1616.811	3	495.5	50.0%	1	K.TTLSSTHGPGIVIDFA.-	2

FAS2_YEAST

35.2%

1887

206945

5.4

(P19097) Fatty acid synthase subunit alpha (EC 2.3.1.86) [Includes: Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synthase)]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01900.01900.2	2.6534	0.1281	1279.53	1279.478	2	660.5	72.2%	1	R.WIETQDVFLK.D	2
*	bob1-06.02351.02351.2	3.395	0.4803	2040.75	2042.255	1	479.6	43.3%	1	R.WIETQDVFLKDFNTER.V	2
*	bob1-02.01534.01534.2	2.9719	0.1889	1626.37	1626.912	1	918.0	66.7%	1	R.VVEIGPSPTLAGMAQR.T	2
*	bob1-04.01130.01130.2	4.3341	0.4233	1667.61	1667.819	1	1688.4	73.1%	1	K.NKYESYDAALSLHR.E	2
*	bob1-02.01390.01390.2	3.1317	0.3176	1597.23	1597.762	1	430.4	57.7%	1	K.EIYYTPDPSELAAK.E	2
*	bob1-04.01768.01768.3	4.9123	0.5496	4196.9	4199.661	1	754.6	22.2%	1	K.EEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVK.A	3
*	bob1-04.01756.01756.2	3.0521	0.3641	2001.09	2002.275	1	494.5	45.2%	1	A.PAPVAAAAPAAAAAEIADEPVK.A	2
*	bob1-03.01443.01443.2	3.4305	0.3404	1150.15	1150.381	1	1669.6	90.0%	1	K.MPGGFTITVAR.K	2
*	bob1-04.01714.01714.2	3.8491	0.2993	1653.79	1653.876	1	1112.4	63.3%	2	R.QDGVLLVALSNEPAAR.L	2
*	bob1-05.01235.01235.3	4.1414	0.2465	2547.92	2547.799	1	846.2	31.2%	1	K.FMEYHISNTDETKGENYQLVK.T	3
*	bob1-06.01959.01959.2	4.9285	0.4443	1863.49	1864.21	1	2047.7	71.9%	1	R.KLSQYVQEMALGGPITK.E	2
*	bob1-05.01375.01375.2	3.6358	0.4444	1863.27	1865.152	1	1629.0	62.5%	1	K.LSQYVQEMALGGPITKE.S	2
*	bob1-06.02294.02294.3	3.8026	0.2102	3401.54	3400.69	8	329.9	21.7%	1	K.FLESSKEIDPSQTTQLAGMDVEDALDKDSTK.E	3
*	bob1-02.02142.02142.2	4.162	0.4744	2276.35	2277.462	1	1124.8	52.5%	1	K.EIDPSQTTQLAGMDVEDALDK.D	2
*	bob1-03.02128.02128.2	3.4093	0.3503	1350.51	1350.555	1	506.1	68.2%	1	R.QLSSLFLDGLEK.A	2
*	bob1-03.02728.02728.2	5.2695	0.4953	1598.29	1598.84	1	1525.1	65.6%	1	K.GSIGAEVLQGLLQGGAK.V	2
*	bob1-07.03494.03494.2	4.7116	0.4036	1812.97	1813.999	1	1827.0	75.0%	2	K.QDVEALIEFIYDTEK.N	2
*	bob1-03.01286.01286.2	3.8108	0.547	1749.89	1750.946	1	641.3	63.3%	1	F.AAIPEQGIELEHIDSK.S	2
*	bob1-06.01967.01967.3	5.2387	0.4914	3178.13	3178.562	1	962.7	29.3%	1	R.GIETRPAQVILPMSPNHGTFGGDGMYSESK.L	3
*	bob1-03.02155.02155.2	3.0588	0.2949	1092.79	1093.268	1	1128.1	87.5%	1	K.LSLETLFNR.W	2
*	bob1-02.01890.01890.2	4.5315	0.4223	1718.99	1718.963	1	1292.3	62.5%	1	R.GTGLMSANNIIAEGIEK.M	2
*	bob1-03.02575.02575.2	3.9698	0.4106	1915.15	1916.243	1	1179.0	64.7%	5	K.SPVMADLNGGLQFVPELK.E	2
*	bob1-06.02178.02178.2	4.0696	0.4676	1676.51	1676.953	1	1551.0	76.9%	1	R.ANIQLDFPELKPYK.Q	2
*	bob1-03.02791.02791.2	4.6309	0.527	1667.51	1667.9	1	1393.7	78.6%	2	K.QIAPAELEGLLDLER.V	2
*	bob1-06.02592.02592.2	4.7015	0.4484	1747.13	1746.019	1	1385.4	65.6%	2	R.VIVVTGFAEVGPWGSAR.T	2
*	bob1-02.00686.00686.2	3.628	0.283	1274.39	1274.414	1	1123.8	80.0%	1	K.TKEPVDDKDVK.A	2
*	bob1-03.01186.01186.2	3.2983	0.2905	1405.85	1405.55	1	699.6	68.2%	1	K.YETSILEHSGIR.L	2
*	bob1-04.01540.01540.2	3.1811	0.2302	1792.15	1792.042	1	885.9	64.3%	1	R.LIEPELFNGYNPEKK.E	2
*	bob1-04.02696.02696.2	5.2038	0.4944	2236.45	2236.496	1	1377.0	55.6%	4	K.EMIQEVIVEEDLEPFEASK.E	2
*	bob1-03.01311.01311.2	3.321	0.3163	1354.91	1355.58	1	615.0	70.8%	1	R.LVAGQIPTGWNAK.T	2
*	bob1-02.01396.01396.2	3.3722	0.3302	1491.41	1488.695	1	979.4	70.8%	1	F.IASGITDPYEMYK.Y	2
*	bob1-03.01127.01127.2	3.8937	0.4583	1491.35	1491.557	1	1125.6	70.8%	1	K.ATSNTLEEFEHGR.T	2
*	bob1-06.03414.03414.2	4.3439	0.4923	1810.35	1810.177	1	1346.6	64.7%	4	K.MGVPIYGIVAMAATATDK.I	2
*	bob1-03.00655.00655.2	3.0031	0.4099	1585.43	1583.701	1	1112.0	70.8%	1	R.TREIHNEAESQLR.A	2
*	bob1-07.02446.02446.2	4.305	0.3999	2396.51	2396.659	1	980.0	45.7%	1	R.GALATYGLTIDDLGVASFHGTSTK.A	2
*	bob1-02.01444.01444.2	3.8694	0.5327	1275.33	1275.447	1	1232.5	81.8%	1	R.SEGNPVIGVFQK.F	2
*	bob1-07.03808.03808.2	5.3071	0.3569	2416.51	2413.818	1	828.3	47.8%	3	K.GAAGAWMMNGALQILNSGIIPGNR.N	2
*	bob1-03.02266.02266.2	3.288	0.3089	1629.63	1629.893	1	892.7	62.5%	2	K.ILEQFEYVLYPSK.T	2
*	bob1-02.01732.01732.2	3.1754	0.3581	1242.85	1242.417	1	1045.1	77.3%	1	R.AVSITSFGFGQK.G	2
*	bob1-06.02119.02119.2	3.96	0.371	2175.01	2175.406	1	690.8	50.0%	1	K.GGQAIVVHPDYLYGAITEDR.Y	2
*	bob1-05.01160.01160.2	2.8976	0.2295	1272.05	1271.479	1	1077.3	83.3%	1	K.FFHNGMIYNK.L	2
*	bob1-06.02363.02363.2	4.7593	0.4328	2375.13	2376.538	1	1455.8	55.3%	2	K.EHAPYTDELEEDVYLDPLAR.V	2
*	bob1-06.02356.02356.3	4.3437	0.389	2376.92	2376.538	1	980.5	40.8%	1	K.EHAPYTDELEEDVYLDPLAR.V	3
*	bob1-06.01864.01864.2	5.954	0.3941	1841.61	1841.072	1	3046.7	70.6%	2	K.VSISHDDLQAVAVAVSTK.K	2
*	bob1-06.01783.01783.3	4.8207	0.4757	1968.83	1969.246	1	1718.0	41.7%	1	K.VSISHDDLQAVAVAVSTKK.-	3

RS13_YEAST

34.7%

150

16898

10.4

(P05756) 40S ribosomal protein S13 (S27A) (YS15)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01915.01915.2	4.1003	0.3513	1331.97	1332.537	1	1286.2	81.8%	3	K.LSSESVIEQIVK.Y	2
*	bob1-07.01810.01810.2	2.7773	0.2434	1382.67	1382.69	1	586.9	62.5%	4	R.KGLTPSQIGVLLR.D	2
*	bob1-03.01919.01919.2	3.5868	0.3677	1254.35	1254.516	1	789.9	72.7%	1	K.GLTPSQIGVLLR.D	2
*	bob1-03.03042.03042.2	3.0794	0.2994	1935.91	1936.212	1	569.8	59.4%	3	K.SNGLAPEIPEDLYYLIK.K	2
*	bob1-03.01380.01380.1	2.317	0.3605	1124.57	1125.356	1	273.7	61.1%	1	R.TVAVLPPNWK.Y	1

RL27_YEAST

34.6%

136

15531

10.4

(P38706) 60S ribosomal protein L27

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01255.01255.2	3.5381	0.4099	1436.21	1436.695	1	905.8	66.7%	1	K.KVVIVKPHDEGSK.S	2
*	bob1-03.00904.00904.2	3.4445	0.3846	1308.25	1308.52	1	1001.9	77.3%	1	K.VVIVKPHDEGSK.S	2
*	bob1-04.01170.01170.2	3.5468	0.2465	1326.57	1326.541	1	1412.0	90.0%	2	K.VVNYNHLLPTR.Y	2
*	bob1-02.01595.01595.2	2.6205	0.2979	1085.43	1086.23	1	800.1	87.5%	1	R.YTLDVEAFK.S	2
*	bob1-02.01591.01591.1	2.1046	0.2192	1086.49	1086.23	1	770.9	68.8%	1	R.YTLDVEAFK.S	1
*	bob1-02.01134.01134.2	4.7486	0.3468	1595.29	1595.706	1	982.3	69.2%	1	K.SVVSTETFEQPSQR.E	2

RL8B_YEAST

34.1%

255

27981

10.0

(P29453) 60S ribosomal protein L8-B (L7A-1) (L4-1) (YL5) (RP6)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01290.01290.2	2.933	0.2538	1194.09	1194.376	2	750.3	75.0%	1	K.AKNPLTHSTPK.N	2
	bob1-03.01143.01143.2	3.6153	0.2839	1159.13	1159.33	1	1351.8	85.0%	1	K.NFGIGQAVQPK.R	2 2
	bob1-03.01878.01878.2	3.4527	0.4314	1649.71	1649.887	1	857.6	69.2%	1	K.VPPTIAQFQYTLDR.N	2 2
	bob1-03.00880.00880.2	3.0329	0.103	1419.41	1419.621	4	785.1	58.3%	1	K.SKQDASPKPYAVK.Y	2 2
	bob1-02.01271.01271.2	4.5589	0.4504	1118.13	1118.275	1	2030.5	85.0%	1	K.TSAVAALTEVR.A	2 2
	bob1-04.01543.01543.2	5.3598	0.2883	2016.19	2017.244	1	1180.5	55.3%	3	K.TSAVAALTEVRAEDEAALAK.L	2 2
	bob1-03.01407.01407.2	3.7349	0.405	1929.49	1929.134	1	827.2	50.0%	2	K.LVSTIDANFADKYDEVK.K	2 2
	bob1-04.01243.01243.2	4.3245	0.4677	2055.81	2057.308	1	793.2	52.9%	2	K.LVSTIDANFADKYDEVKK.H	2 2

Similarities: RL8A_YEAST(7:1)

U	R261_YEAST	5	7	34.1%	126	14103	10.6	(P05743) 60S ribosomal protein L26-A (YL33)
U	R262_YEAST	5	7	34.1%	126	14103	10.5	(P53221) 60S ribosomal protein L26-B (YL33)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-05.01130.01130.2	3.1358	0.3197	1083.99	1084.348	1	1237.9	94.4%	2	R.RVLLSAPLSK.E	2
bob1-03.00552.00552.2	2.7418	0.2498	1101.23	1101.248	4	909.0	75.0%	1	R.RDDEVLVVR.G	2
bob1-02.01140.01140.1	2.1894	0.3355	944.5	945.061	1	487.9	78.6%	1	R.DDEVLVVR.G	1
bob1-03.01074.01074.2	2.5516	0.2006	1134.91	1135.349	1	1349.2	83.3%	1	K.FAVQVDKVTK.E	2
bob1-04.01078.01078.2	3.3084	0.3855	1433.41	1433.651	1	473.6	65.4%	2	K.VNGASVPINLHPSK.L	2

RS3_YEAST

33.9%

239

26372

9.4

(P05750) 40S ribosomal protein S3 (YS3) (RP13)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.03919.03919.2	4.8775	0.539	1992.05	1992.238	1	1253.7	56.2%	2	K.LVADGVFYAELNEFFTR.E	2
*	bob1-03.01442.01442.2	3.446	0.3526	1352.59	1353.561	1	529.3	77.3%	2	K.YAPGTIVLYAER.V	2
*	bob1-02.01160.01160.2	3.7978	0.4408	1191.95	1192.373	1	1489.5	86.4%	1	R.GLSAVAQAESMK.F	2
*	bob1-02.01708.01708.1	2.2405	0.2179	1266.59	1267.508	114	405.7	45.5%	1	K.ALPDAVTIIEPK.E	1
*	bob1-06.02380.02380.2	5.0143	0.4574	2459.79	2460.871	1	714.2	47.7%	2	K.ALPDAVTIIEPKEEEPILAPSVK.D	2
*	bob1-06.02399.02399.2	4.3567	0.4294	2275.47	2276.632	1	738.4	50.0%	1	L.PDAVTIIEPKEEEPILAPSVK.D	2
*	bob1-06.02384.02384.3	3.6975	0.3385	2276.75	2276.632	1	814.0	32.5%	1	L.PDAVTIIEPKEEEPILAPSVK.D	3
*	bob1-02.01092.01092.2	3.8583	0.3611	1906.51	1905.97	1	629.6	59.4%	1	K.DYRPAEETEAQAEPVEA.-	2

RS18_YEAST

33.6%

146

17038

10.3

(P35271) 40S ribosomal protein S18

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.00634.00634.2	3.281	0.373	1082.17	1082.248	1	1709.7	93.8%	1	K.KADVDLHKR.A	2
*	bob1-04.01094.01094.2	3.8178	0.3153	1472.29	1472.745	1	1281.7	77.3%	1	R.IVQIMQNPTHYK.I	2
*	bob1-03.01786.01786.2	2.8096	0.3305	1017.19	1017.219	1	634.8	85.7%	2	K.IPAWFLNR.Q	2
*	bob1-03.01103.01103.3	3.5316	0.2662	2262.32	2263.382	4	624.2	28.9%	1	R.QNDITDGKDYHTLANNVESK.L	3
*	bob1-03.01102.01102.2	3.5371	0.444	2263.03	2263.382	2	312.4	31.6%	1	R.QNDITDGKDYHTLANNVESK.L	2

RS6_YEAST

33.5%

236

26996

10.4

(P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01187.01187.2	3.6804	0.2278	1579.31	1579.855	1	1339.8	73.1%	2	-.MKLNISYPVNGSQK.T	2
*	bob1-02.01223.01223.2	5.1737	0.4537	1593.07	1593.687	1	1873.2	78.6%	1	R.IGQEVDGEAVGDEFK.G	2
*	bob1-05.01744.01744.3	3.7817	0.3423	2187.38	2188.398	1	1058.0	38.2%	1	R.IGQEVDGEAVGDEFKGYVFK.I	3
*	bob1-05.01738.01738.2	5.7732	0.5656	2187.61	2188.398	1	2275.6	71.1%	3	R.IGQEVDGEAVGDEFKGYVFK.I	2
*	bob1-07.03930.03930.2	2.5031	0.3873	1648.09	1649.07	1	617.9	50.0%	1	R.GAIVGPDLAVLALVIVK.K	2
*	bob1-03.01166.01166.2	4.123	0.3327	1747.07	1745.924	1	799.9	63.3%	1	K.KGEQELEGLTDTTVPK.R	2
*	bob1-02.01435.01435.1	2.4027	0.082	1277.38	1278.448	178	270.0	50.0%	1	R.EAAAEYAQLLAK.R	1
*	bob1-02.01423.01423.2	3.7957	0.348	1279.19	1278.448	1	1191.2	81.8%	1	R.EAAAEYAQLLAK.R	2

RL9B_YEAST

33.5%

191

21657

9.7

(P51401) 60S ribosomal protein L9-B (L8) (YL11) (RP25)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01807.01807.2	4.5431	0.4147	2177.11	2176.472	1	669.3	55.6%	2	K.YIQTEQQIEIPEGVTVSIK.S	2
	bob1-06.01279.01279.1	1.8421	0.1497	795.51	794.975	13	298.0	75.0%	1	R.KHVAALR.T	1 1
	bob1-02.01743.01743.2	4.1494	0.4367	1278.31	1278.507	1	1912.5	86.4%	1	K.SLVDNMITGVTK.G	2 2
	bob1-07.02111.02111.3	3.6382	0.2439	1806.23	1807.102	1	534.3	44.6%	1	R.YVYAHFPINVNIVEK.D	3 3
	bob1-07.02102.02102.2	4.0787	0.4662	1806.57	1807.102	1	986.1	71.4%	2	R.YVYAHFPINVNIVEK.D	2 2
	bob1-06.01708.01708.2	3.6395	0.1972	1307.57	1307.535	2	1374.0	80.0%	2	R.KFLDGIYVSHK.G	2 2
	bob1-04.01250.01250.2	3.6426	0.1709	1179.25	1179.361	1	1164.8	88.9%	1	K.FLDGIYVSHK.G	2 2

Similarities: RL9A_YEAST(6:1)

RL38_YEAST

33.3%

8827

10.9

(P49167) 60S ribosomal protein L38

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01871.01871.2	4.6122	0.4314	1525.03	1525.699	1	1563.1	67.9%	4	R.GSSSLYTLVINDAGK.A	2
*	bob1-06.01531.01531.2	3.7052	0.3499	1237.83	1238.556	3	776.0	70.0%	2	K.KLIQSLPPTLK.V	2

RLA3_YEAST

33.0%

106

10668

4.0

(P10622) 60S acidic ribosomal protein P1-beta (L44') (L12EIIB)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.02579.02579.2	3.6671	0.4219	2003.89	2002.313	1	558.6	44.4%	2	F.ILADAGLEITSDNLLTITK.A	2
*	bob1-04.01559.01559.2	2.8651	0.2776	1664.37	1664.815	1	728.7	53.3%	2	K.AAGANVDNVWADVYAK.A	2

RL4A_YEAST

31.9%

361

38961

10.6

(P10664) 60S ribosomal protein L4-A (L2A) (RP2)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-06.03603.03603.3	5.0646	0.4246	1820.06	1821.127	1	1742.0	47.2%	3	R.YATASAIAATAVASLVLAR.G	3 3
	bob1-07.03414.03414.2	5.2983	0.4747	1821.71	1821.127	1	1674.8	61.1%	6	R.YATASAIAATAVASLVLAR.G	2 2
	bob1-03.02903.02903.2	5.093	0.5374	1880.83	1882.205	1	967.7	71.9%	8	K.IPEIPLVVSTDLESIQK.T	2 2
	bob1-03.02878.02878.3	4.5085	0.4186	1881.98	1882.205	1	1605.8	48.4%	1	K.IPEIPLVVSTDLESIQK.T	3 3
	bob1-04.01263.01263.2	4.2087	0.3388	1630.69	1630.885	1	1268.3	71.4%	1	R.RGPLVVYAEDNGIVK.A	2 2
	bob1-03.01435.01435.2	4.5911	0.4589	1474.25	1474.697	1	1318.8	76.9%	1	R.GPLVVYAEDNGIVK.A	2 2
	bob1-05.02068.02068.2	3.2803	0.3315	1312.97	1313.539	1	1113.0	80.0%	2	R.FVIWTEAAFTK.L	2 2
	bob1-04.01382.01382.2	4.4641	0.457	1846.41	1847.078	1	740.1	65.6%	2	K.VGYTLPSHIISTSDVTR.I	2 2
	bob1-04.01392.01392.3	4.0541	0.295	1847.3	1847.078	2	831.6	39.1%	2	K.VGYTLPSHIISTSDVTR.I	3 3
	bob1-04.01106.01106.2	3.0416	0.3706	1527.39	1527.718	1	868.4	69.2%	1	Y.TLPSHIISTSDVTR.I	2 2
	bob1-04.01180.01180.2	4.6807	0.4523	2112.81	2113.379	1	866.4	47.4%	1	R.IINSSEIQSAIRPAGQATQK.R	2 2
	bob1-04.01182.01182.3	4.5207	0.3078	2113.13	2113.379	1	786.0	42.1%	1	R.IINSSEIQSAIRPAGQATQK.R	3 3
	bob1-04.01184.01184.2	4.1113	0.4137	1886.93	1887.06	2	536.6	41.2%	1	I.NSSEIQSAIRPAGQATQK.R	2 2
*	bob1-03.01211.01211.2	3.0734	0.2942	1464.21	1464.702	1	644.3	73.1%	1	K.TGTKPAAVFTETLK.H	2
*	bob1-04.01118.01118.2	4.0685	0.343	1716.23	1716.932	1	880.5	66.7%	1	K.TGTKPAAVFTETLKHD.-	2
*	bob1-04.01126.01126.3	3.9958	0.2941	1717.28	1716.932	1	1057.5	45.0%	1	K.TGTKPAAVFTETLKHD.-	3

Similarities: RL4B_YEAST(13:3)

RL4B_YEAST

31.9%

361

38931

10.6

(P49626) 60S ribosomal protein L4-B (L2B) (RP2)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-06.03603.03603.3	5.0646	0.4246	1820.06	1821.127	1	1742.0	47.2%	3	R.YATASAIAATAVASLVLAR.G	3 3
	bob1-07.03414.03414.2	5.2983	0.4747	1821.71	1821.127	1	1674.8	61.1%	6	R.YATASAIAATAVASLVLAR.G	2 2
	bob1-03.02903.02903.2	5.093	0.5374	1880.83	1882.205	1	967.7	71.9%	8	K.IPEIPLVVSTDLESIQK.T	2 2
	bob1-03.02878.02878.3	4.5085	0.4186	1881.98	1882.205	1	1605.8	48.4%	1	K.IPEIPLVVSTDLESIQK.T	3 3
	bob1-04.01263.01263.2	4.2087	0.3388	1630.69	1630.885	1	1268.3	71.4%	1	R.RGPLVVYAEDNGIVK.A	2 2
	bob1-03.01435.01435.2	4.5911	0.4589	1474.25	1474.697	1	1318.8	76.9%	1	R.GPLVVYAEDNGIVK.A	2 2
	bob1-05.02068.02068.2	3.2803	0.3315	1312.97	1313.539	1	1113.0	80.0%	2	R.FVIWTEAAFTK.L	2 2
	bob1-04.01382.01382.2	4.4641	0.457	1846.41	1847.078	1	740.1	65.6%	2	K.VGYTLPSHIISTSDVTR.I	2 2
	bob1-04.01392.01392.3	4.0541	0.295	1847.3	1847.078	2	831.6	39.1%	2	K.VGYTLPSHIISTSDVTR.I	3 3
	bob1-04.01106.01106.2	3.0416	0.3706	1527.39	1527.718	1	868.4	69.2%	1	Y.TLPSHIISTSDVTR.I	2 2
	bob1-04.01180.01180.2	4.6807	0.4523	2112.81	2113.379	1	866.4	47.4%	1	R.IINSSEIQSAIRPAGQATQK.R	2 2
	bob1-04.01182.01182.3	4.5207	0.3078	2113.13	2113.379	1	786.0	42.1%	1	R.IINSSEIQSAIRPAGQATQK.R	3 3
	bob1-04.01184.01184.2	4.1113	0.4137	1886.93	1887.06	2	536.6	41.2%	1	I.NSSEIQSAIRPAGQATQK.R	2 2
*	bob1-04.01160.01160.2	3.9851	0.4401	1686.97	1686.905	1	1137.3	73.3%	1	K.TGTKPAAVFAETLKHD.-	2

Similarities: RL4A_YEAST(13:1)

RT31_YEAST

31.7%

123

13689

9.5

(P19955) 40S ribosomal protein YMR-31, mitochondrial precursor

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01174.01174.2	2.7427	0.2444	1231.93	1232.442	1	989.8	81.2%	1	K.FMENYKPFR.V	2
*	bob1-02.02562.02562.2	3.752	0.3126	1361.11	1361.538	1	1324.5	72.7%	2	K.DELASIFELPAR.F	2
*	bob1-05.01474.01474.2	3.694	0.2777	2045.21	2045.216	1	742.7	47.1%	2	R.YKPINEHELESINSGGAW.-	2

O42831

31.2%

157

17003

9.5

(O42831) Yar075wp (YAR075W)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-02.01074.01074.1	1.9003	0.1849	1037.4	1038.222	3	451.9	61.1%	1	R.GMGSIDAMQK.T	1 1 1 1
bob1-02.01076.01076.2	2.7273	0.131	1038.03	1038.222	1	1132.3	88.9%	1	R.GMGSIDAMQK.T	2 2 2 2
bob1-04.01740.01740.3	4.8883	0.4156	2157.77	2158.37	1	2503.9	43.8%	1	R.YFSESDSVLVAQGVSGAVVDK.G	3 3 3 3
bob1-04.01727.01727.2	5.8564	0.5861	2158.55	2158.37	1	2315.8	72.5%	10	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2 2
bob1-06.02112.02112.2	4.0463	0.4391	2542.67	2543.833	1	704.8	43.8%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	2 2 2 2
bob1-06.02106.02106.3	4.3979	0.4127	2545.01	2543.833	1	563.0	35.4%	1	R.YFSESDSVLVAQGVSGAVVDKGSIK.K	3 3 3 3
bob1-06.01932.01932.2	5.0965	0.4666	2670.85	2672.007	1	1147.5	50.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	2 2 2 2
bob1-06.01928.01928.3	4.2737	0.4126	2671.43	2672.007	1	641.2	32.0%	1	R.YFSESDSVLVAQGVSGAVVDKGSIKK.F	3 3 3 3
bob1-03.01146.01146.2	3.6725	0.3105	1417.45	1417.646	1	1105.3	70.8%	1	R.SLTLLKENVQSGK.V	2 2

Similarities: IMD3_YEAST(9:0)
IMD4_YEAST(8:1)
IMD2_YEAST(8:1)

DED1_YEAST

31.1%

604

65553

7.8

(P06634) Probable ATP-dependent RNA helicase DED1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.03143.03143.3	4.0551	0.2072	3644.27	3643.899	1	285.8	22.7%	1	K.AEIAIFGVPEDPNFQSSGINFDNYDDIPVDASGK.D	3
*	bob1-04.03226.03226.2	4.9248	0.4433	2538.39	2538.898	1	697.3	52.3%	16	K.DVPEPITEFTSPPLDGLLLENIK.L	2
*	bob1-03.03298.03298.2	4.702	0.4245	2324.61	2324.676	1	585.8	52.5%	1	V.PEPITEFTSPPLDGLLLENIK.L	2
*	bob1-03.03296.03296.2	2.7887	0.3034	2099.91	2098.444	2	352.1	41.7%	1	E.PITEFTSPPLDGLLLENIK.L	2
*	bob1-03.03295.03295.1	3.1065	0.3278	1321.52	1322.588	1	596.2	63.6%	1	S.PPLDGLLLENIK.L	1
*	bob1-03.03300.03300.2	3.8468	0.3292	1322.67	1322.588	1	1910.9	77.3%	1	S.PPLDGLLLENIK.L	2
*	bob1-03.02982.02982.2	3.7269	0.2759	1531.67	1529.776	1	890.0	76.9%	6	K.TGGFLFPVLSESFK.T	2
*	bob1-03.02990.02990.1	1.8149	0.2758	906.42	907.054	2	697.5	78.6%	1	F.PVLSESFK.T	1
*	bob1-02.01062.01062.2	3.6554	0.492	1766.35	1766.864	1	791.3	70.0%	1	K.TGPSPQPESQGSFYQR.K	2
*	bob1-04.01122.01122.2	4.3762	0.3639	1419.33	1419.725	1	1058.6	75.0%	2	R.KAYPTAVIMAPTR.E	2
*	bob1-02.01528.01528.2	3.1929	0.4087	1265.27	1265.406	1	973.2	80.0%	1	R.ELATQIFDEAK.K	2
*	bob1-03.01323.01323.2	2.8139	0.1854	1395.49	1393.58	1	877.7	63.6%	1	R.ELATQIFDEAKK.F	2
*	bob1-04.01276.01276.2	2.9037	0.3339	1428.29	1427.603	1	514.9	66.7%	1	F.SATFPADIQHLAR.D	2
*	bob1-07.03426.03426.2	4.7944	0.3933	1532.11	1532.736	1	2333.1	87.5%	3	R.DFLSDYIFLSVGR.V	2
*	bob1-05.02892.02892.2	4.4786	0.4498	1843.43	1844.154	1	1476.8	71.4%	6	R.MADQLTDFLIMQNFR.A	2
*	bob1-03.01683.01683.2	5.1763	0.4905	1371.97	1372.608	1	2564.1	78.6%	10	R.SGAATLLVATAVAAR.G	2
*	bob1-02.02031.02031.2	5.0917	0.5083	2055.43	2056.24	1	1336.4	60.5%	8	R.AGNTGLATAFFNSENSNIVK.G	2

HS60_YEAST

30.8%

572

60752

5.3

(P19882) Heat shock protein 60, mitochondrial precursor (Stimulator factor I 66 kDa component) (P66) (CPN60)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02875.02875.2	4.9687	0.4475	1527.75	1527.758	1	1773.8	73.3%	3	K.GVETLAEAVAATLGPK.G	2
*	bob1-05.01283.01283.2	2.9681	0.3467	1552.27	1552.817	1	533.8	46.2%	1	K.GRNVLIEQPFGPPK.I	2
*	bob1-02.01583.01583.2	3.3146	0.276	1339.21	1339.577	1	1050.8	68.2%	1	R.NVLIEQPFGPPK.I	2
*	bob1-03.01220.01220.2	3.0344	0.2993	1148.93	1149.376	1	870.7	77.8%	1	K.VIEFLSANKK.E	2
*	bob1-04.01479.01479.2	3.9304	0.3452	2459.47	2458.641	1	761.6	41.3%	2	K.EITTSEEIAQVATISANGDSHVGK.L	2
*	bob1-03.01540.01540.2	4.7676	0.3571	1522.23	1522.667	1	1923.7	79.2%	2	R.TLEDELEVTEGMR.F	2
*	bob1-06.02291.02291.2	3.8395	0.3303	1544.53	1545.86	1	775.0	75.0%	1	K.VEFEKPLLLLSEK.K	2
*	bob1-02.02836.02836.2	3.9377	0.4291	1985.09	1985.245	1	663.5	55.9%	6	K.ISSIQDILPALEISNQSR.R	2
*	bob1-02.01522.01522.2	4.1534	0.3699	1582.15	1582.838	3	532.3	56.2%	1	R.AAVEEGILPGGGTALVK.A	2
*	bob1-03.01440.01440.2	4.4855	0.4941	1520.17	1520.679	1	1961.6	83.3%	2	R.VLDEVVVDNFDQK.L	2
*	bob1-03.01266.01266.2	4.1861	0.4528	1657.59	1657.861	1	1469.7	70.0%	2	K.QIIENAGEEGSVIIGK.L	2
*	bob1-06.02904.02904.2	4.8149	0.5136	2425.87	2423.697	1	1262.3	50.0%	3	K.GYDASKSEYTDMLATGIIDPFK.V	2
*	bob1-03.02846.02846.2	5.2022	0.4986	1801.33	1802.049	1	2420.0	80.0%	2	K.SEYTDMLATGIIDPFK.V	2

U	RS1A_YEAST	3	9	30.5%	105	12739	8.8	(Q08745) 40S ribosomal protein S10-A
U	RS1B_YEAST	3	9	30.5%	105	12738	9.1	(P46784) 40S ribosomal protein S10-B

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-07.01710.01710.2	4.718	0.5106	1632.39	1631.915	1	1817.6	84.6%	6	K.IHQYLFQEGVVVAK.K	2
bob1-06.01766.01766.3	4.1331	0.2209	1632.56	1631.915	1	1518.2	50.0%	1	K.IHQYLFQEGVVVAK.K	3
bob1-06.02222.02222.2	3.578	0.3263	2171.41	2172.445	1	597.7	50.0%	2	R.EYLNLPEHIVPGTYIQER.N	2

RS15_YEAST

30.3%

142

16002

10.7

(Q01855) 40S ribosomal protein S15 (S21) (YS21) (RP52) (RIG protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01672.01672.1	2.4675	0.2216	1311.65	1312.521	18	486.2	50.0%	1	K.LLEMSTEDFVK.L	1
*	bob1-02.01658.01658.2	3.7369	0.3786	1312.09	1312.521	1	1414.0	90.0%	1	K.LLEMSTEDFVK.L	2
*	bob1-03.00599.00599.2	2.5612	0.2528	1391.97	1392.598	1	560.6	66.7%	1	K.LAAPENEKPAPVR.T	2
*	bob1-06.03782.03782.2	5.8748	0.5389	2035.29	2035.468	1	1271.0	72.2%	27	R.NMIIVPEMIGSVVGIYNGK.A	2

YG4L_YEAST

30.0%

110

12393

10.2

(P53305) Hypothetical 12.4 kDa protein in NAB1A-GPI1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01740.01740.2	3.9432	0.3336	1821.61	1823.099	1	1310.7	62.5%	2	R.LKGPSVASYYGNPDILK.F	2
*	bob1-03.02616.02616.2	4.6665	0.5639	2030.31	2031.226	1	1352.8	70.0%	1	K.TLYPDIEFVDLEEQYR.L	2

RL8A_YEAST

29.8%

255

27994

10.0

(P17076) 60S ribosomal protein L8-A (L7A-2) (L4-2) (YL5) (RP6)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-03.01143.01143.2	3.6153	0.2839	1159.13	1159.33	1	1351.8	85.0%	1	K.NFGIGQAVQPK.R	2 2
bob1-03.01878.01878.2	3.4527	0.4314	1649.71	1649.887	1	857.6	69.2%	1	K.VPPTIAQFQYTLDR.N	2 2
bob1-03.00880.00880.2	3.0329	0.103	1419.41	1419.621	4	785.1	58.3%	1	K.SKQDASPKPYAVK.Y	2 2
bob1-02.01271.01271.2	4.5589	0.4504	1118.13	1118.275	1	2030.5	85.0%	1	K.TSAVAALTEVR.A	2 2
bob1-04.01543.01543.2	5.3598	0.2883	2016.19	2017.244	1	1180.5	55.3%	3	K.TSAVAALTEVRAEDEAALAK.L	2 2
bob1-03.01407.01407.2	3.7349	0.405	1929.49	1929.134	1	827.2	50.0%	2	K.LVSTIDANFADKYDEVK.K	2 2
bob1-04.01243.01243.2	4.3245	0.4677	2055.81	2057.308	1	793.2	52.9%	2	K.LVSTIDANFADKYDEVKK.H	2 2

Similarities: RL8B_YEAST(7:0)

RT19_YEAST

29.7%

10275

10.5

(P53733) Mitochondrial ribosomal protein S19

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02030.02030.2	3.012	0.2802	1258.45	1258.547	13	445.0	68.2%	1	R.AATILPQFVGLK.F	2
*	bob1-04.01671.01671.2	3.2121	0.3541	1746.69	1746.973	1	708.6	60.7%	1	K.EYVPIEISEDMVGHK.L	2

HS74_YEAST

29.6%

641

69520

5.1

(P22202) Heat shock protein SSA4

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01286.01286.2	2.851	0.2032	1487.59	1488.594	1	654.6	70.8%	1	R.TTPSYVAFTDTER.L	2 2
*	bob1-03.01072.01072.2	4.3855	0.1438	1659.25	1658.829	1	1615.6	78.6%	1	K.NQAAMNPHNTVFDAK.R	2
*	bob1-03.02578.02578.2	3.4104	0.3752	1597.09	1597.864	1	1041.2	76.9%	1	K.TFTPEEISSMILTK.M	2
	bob1-02.01506.01506.1	2.2569	0.2771	1097.43	1098.16	2	280.7	68.8%	2	V.PAYFNDSQR.Q	1 1 1 1 1
	bob1-04.01307.01307.2	3.5831	0.3801	1628.55	1628.869	1	683.8	60.0%	1	R.QATKDAGTIAGLNVLR.I	2 2 2 2
	bob1-02.01666.01666.2	4.1582	0.2449	1200.05	1200.381	1	1645.6	95.5%	2	K.DAGTIAGLNVLR.I	2 2 2 2
	bob1-02.01806.01806.2	4.8926	0.4655	1660.77	1660.908	1	1636.8	83.3%	3	R.IINEPTAAAIAYGLDK.K	2 2 2 2
	bob1-04.01486.01486.2	5.1759	0.4332	1789.35	1789.082	1	1144.6	71.9%	5	R.IINEPTAAAIAYGLDKK.S	2 2 2 2
	bob1-04.01459.01459.2	4.3006	0.5121	1562.17	1562.763	1	1090.4	78.6%	1	I.NEPTAAAIAYGLDKK.S	2 2 2 2
	bob1-04.01487.01487.2	3.4446	0.4021	1319.09	1319.544	1	1243.9	70.8%	1	E.PTAAAIAYGLDKK.S	2 2 2 2
	bob1-03.01306.01306.2	3.5262	0.5045	1524.21	1523.688	1	1213.7	70.8%	1	K.LVSDFFNGKEPNR.S	2 2
	bob1-07.04008.04008.2	3.5737	0.3916	2570.33	2571.045	1	444.9	37.5%	1	T.TQDLLLLDVAPLSLGIETAGGIMTK.L	2 2
	bob1-03.02964.02964.2	4.888	0.2286	2586.05	2586.817	1	802.6	47.7%	5	K.SEVFSTYADNQPGVLIQVFEGER.T	2 2
	bob1-03.02976.02976.3	3.8741	0.2868	2586.08	2586.817	1	1077.7	30.7%	1	K.SEVFSTYADNQPGVLIQVFEGER.T	3 3
	bob1-06.02566.02566.2	3.8432	0.4486	1938.95	1939.222	1	1007.9	55.9%	4	K.DNNLLGKFELSGIPPAPR.G	2 2 2 2
	bob1-03.01394.01394.2	3.342	0.4899	1184.05	1184.381	1	1206.4	90.0%	3	K.FELSGIPPAPR.G	2 2 2 2
*	bob1-06.02684.02684.3	4.4302	0.3035	3008.93	3010.244	1	815.2	26.0%	1	R.KLEAAAQDAINWLDASQAASTEEYKER.Q	3

Similarities: HS71_YEAST(9:8)
HS72_YEAST(11:6)
HS77_YEAST(1:16)
GR78_YEAST(2:15)
HS73_YEAST(10:7)

RL19_YEAST

29.3%

188

21573

11.4

(P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01012.01012.2	3.3358	0.3337	1057.17	1057.282	1	889.7	75.0%	1	K.RLAASVVGVGK.R	2
*	bob1-02.01490.01490.2	5.393	0.4827	1930.65	1931.069	1	2112.6	81.2%	1	K.VWLDPNETSEIAQANSR.N	2
*	bob1-03.01526.01526.2	3.5867	0.3502	1098.39	1098.333	1	1412.2	93.8%	1	R.LPSQVVWIR.R	2
*	bob1-04.01116.01116.1	2.1586	0.1568	1121.67	1122.353	16	473.2	61.1%	1	R.ALVEHIIQAK.A	1
*	bob1-04.01110.01110.2	3.5924	0.3333	1122.17	1122.353	1	1435.8	83.3%	2	R.ALVEHIIQAK.A	2
*	bob1-02.01008.01008.1	1.8608	0.1424	874.43	874.966	2	507.3	64.3%	1	R.DALLKEDA.-	1

IF32_YEAST

29.1%

347

38755

5.7

(P40217) Eukaryotic translation initiation factor 3 39 kDa subunit (eIF3 p39) (Translation initiation factor eIF3, p39 subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01758.01758.2	4.7187	0.5041	1870.01	1871.1	1	1679.3	64.7%	2	K.IITHEGLDAATVAGWSTK.G	2
*	bob1-04.01374.01374.2	3.0288	0.1681	2202.69	2204.311	1	290.3	44.1%	1	K.YDVSNNYEYVDSIDLHEK.S	2
*	bob1-03.02938.02938.2	4.6916	0.4534	2196.71	2196.436	1	1030.8	58.3%	1	K.SISDMQFSPDLTYFITSSR.D	2
*	bob1-05.02883.02883.2	2.9063	0.2676	1779.11	1780.028	1	669.1	50.0%	1	R.DTNSFLVDVSTLQVLK.K	2
*	bob1-06.02231.02231.3	5.9046	0.4687	3063.41	3064.341	1	1732.3	30.2%	2	R.VQGHFGPLNTVAISPQGTSYASGGEDGFIR.L	3

SPT5_YEAST

29.0%

1063

115650

5.2

(P27692) Transcription initiation protein SPT5

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.00999.00999.2	3.4725	0.3607	1890.45	1890.958	1	412.5	53.3%	1	R.QLDQDLNKTSEEDAQR.L	2
*	bob1-05.02838.02838.2	3.9667	0.4585	1677.49	1675.968	1	1276.1	78.6%	8	R.FLLPSVDTATIWGVR.C	2
*	bob1-02.01175.01175.2	4.3671	0.2512	1439.87	1440.507	1	2107.2	83.3%	1	K.SDDVALEEGSYVR.I	2
*	bob1-05.02686.02686.2	5.7173	0.4613	2122.21	2120.441	1	2068.3	75.0%	7	K.GDLAMVDQISENNLEVMLK.I	2
*	bob1-03.01304.01304.2	4.4691	0.5033	1926.61	1927.078	1	945.2	70.0%	1	R.LDYGKFDEIDPTTQQR.K	2
*	bob1-03.01310.01310.3	3.7819	0.0891	1926.86	1927.078	1	1484.9	45.0%	1	R.LDYGKFDEIDPTTQQR.K	3
*	bob1-03.02035.02035.2	3.7688	0.3406	1457.75	1456.746	1	1427.8	79.2%	6	R.APPQLFNPTMALR.L	2
*	bob1-03.01928.01928.2	2.5149	0.2607	1384.93	1385.667	1	537.5	59.1%	1	A.PPQLFNPTMALR.L	2
*	bob1-02.01030.01030.1	1.9122	0.1297	964.44	965.094	4	470.7	71.4%	1	R.LDQANLYK.R	1
*	bob1-02.01511.01511.1	2.7303	0.2244	1393.48	1393.493	1	601.7	70.0%	1	K.NEDYIDGYLYK.S	1
*	bob1-02.01492.01492.2	3.5721	0.2572	1394.13	1393.493	1	1289.7	85.0%	1	K.NEDYIDGYLYK.S	2
*	bob1-02.01231.01231.2	2.551	0.1554	1269.79	1270.428	1	768.1	75.0%	1	K.NIQPTVEELAR.F	2
*	bob1-04.01312.01312.2	4.4585	0.4486	1853.35	1854.067	1	1290.4	55.9%	1	R.FGSKEGAVDLTSVSQSIK.K	2
*	bob1-02.01366.01366.2	3.994	0.4484	1434.25	1434.587	1	1711.2	76.9%	1	K.EGAVDLTSVSQSIK.K	2
*	bob1-03.01218.01218.2	4.1007	0.3641	1562.53	1562.761	1	1130.3	64.3%	1	K.EGAVDLTSVSQSIKK.A	2
*	bob1-04.01266.01266.2	3.657	0.3218	1958.51	1959.169	1	1045.5	56.2%	2	K.VTFQPGDRIEVLNGEQR.G	2
*	bob1-03.01338.01338.3	3.7425	0.2378	1960.88	1959.169	1	686.7	42.2%	1	K.VTFQPGDRIEVLNGEQR.G	3
*	bob1-03.02866.02866.2	3.9076	0.4453	1806.47	1807.1	1	374.8	46.7%	5	K.LNGFTTPLEFPISTLR.K	2
*	bob1-02.01079.01079.1	2.0756	0.1284	1189.49	1190.339	4	257.9	60.0%	1	R.EVTITANNLSK.S	1
*	bob1-06.02478.02478.3	3.8196	0.1694	3525.71	3523.873	1	628.0	20.3%	2	R.EVTITANNLSKSIDTTATSSEYALHDIVELSAK.N	3
*	bob1-07.02347.02347.2	5.1353	0.4911	2351.97	2352.557	1	1549.9	52.4%	6	K.SIDTTATSSEYALHDIVELSAK.N	2
*	bob1-03.01263.01263.2	4.2756	0.4167	2088.95	2089.307	1	1596.2	55.3%	1	R.VSSVDANGNEIKIGDTIVEK.V	2
*	bob1-06.01964.01964.2	5.482	0.4558	2272.25	2272.607	1	1776.7	59.5%	1	K.KIVENAGVFVVNPSNVEAVASK.D	2
*	bob1-02.02026.02026.2	5.7073	0.448	2143.83	2144.433	1	1157.4	55.0%	4	K.IVENAGVFVVNPSNVEAVASK.D	2
*	bob1-06.02499.02499.3	3.8068	0.2758	2946.74	2947.333	3	442.6	24.1%	1	K.IVENAGVFVVNPSNVEAVASKDNMLSNK.M	3
*	bob1-02.01347.01347.2	4.27	0.4326	1551.81	1552.638	1	1019.6	76.9%	1	R.EGGEGITYDELVNR.R	2
*	bob1-03.01003.01003.2	3.9602	0.4663	1064.67	1065.232	1	1001.1	88.9%	1	R.MGPSYVSAPR.N	2
*	bob1-02.01032.01032.2	4.4552	0.4636	1597.89	1598.629	1	1170.0	63.3%	1	R.SAYGGASTWGGNNNNK.S	2
*	bob1-02.01006.01006.2	3.5191	0.3913	1236.75	1237.23	1	1266.3	81.8%	1	K.SNYGGNSTWGGH.-	2

RL20_YEAST

28.7%

174

20713

10.3

(P47913) 60S ribosomal protein L20 (L18A)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01012.01012.2	3.1296	0.1888	1253.17	1253.441	2	665.9	75.0%	1	R.RLPTESVPEPK.L	2
*	bob1-03.01174.01174.2	4.1164	0.2761	1909.39	1909.106	1	1585.0	64.7%	1	K.ASGEIVSINQINEAHPTK.V	2
*	bob1-03.01410.01410.1	2.2412	0.2006	877.48	878.021	2	262.9	83.3%	1	K.NFGVWVR.Y	1
*	bob1-02.01932.01932.2	4.905	0.4082	1539.87	1538.759	1	1787.6	84.6%	2	R.VAAVETLYQDMAAR.H	2

RS3B_YEAST

28.3%

254

28681

10.0

(P23248) 40S ribosomal protein S1-B (RP10B)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-06.02230.02230.2	4.4346	0.342	1755.31	1754.955	1	1555.4	71.4%	1	K.NLLTNFHGMDFTTDK.L	2 2
	bob1-06.02115.02115.2	3.4114	0.2825	1711.23	1711.996	1	349.5	60.7%	1	K.LIPEVINKEIENATK.D	2 2
	bob1-06.02075.02075.2	3.2259	0.3273	1352.33	1352.579	1	813.2	80.0%	3	K.DIFPLQNIHVR.K	2 2
	bob1-07.02030.02030.2	4.1981	0.4247	1847.17	1848.037	1	1249.4	64.7%	3	K.FDVGALMALHGEGSGEEK.G	2 2
*	bob1-03.01383.01383.2	2.7126	0.1404	1451.37	1451.66	87	400.0	45.8%	1	K.KVSGFKDEVLETV.-	2

Similarities: RS3A_YEAST(4:1)

RS8_YEAST

28.1%

199

22358

10.7

(P05754) 40S ribosomal protein S8 (S14) (YS9) (RP19)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01488.01488.2	4.3825	0.4638	1626.47	1626.763	1	1047.8	64.3%	2	R.IETGNFSWASEGISK.K	2
*	bob1-03.01359.01359.2	4.4881	0.4953	1754.07	1754.937	1	1668.1	73.3%	2	R.IETGNFSWASEGISKK.T	2
*	bob1-04.01095.01095.2	2.6154	0.2316	1669.77	1668.893	3	318.6	42.9%	1	R.IAGVVYHPSNNELVR.T	2
*	bob1-05.01255.01255.2	3.2897	0.3346	1566.89	1565.728	1	726.0	66.7%	3	R.QWFEAHYGQTLGK.K	2
*	bob1-04.00624.00624.2	3.1948	0.3088	1403.85	1403.619	1	839.8	68.2%	1	K.KKNVKEEETVAK.S	2

DPM1_YEAST

27.7%

267

30362

7.9

(P14020) Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02536.02536.3	3.8361	0.2979	3221.75	3222.406	1	632.6	26.8%	1	K.TELIFVDDNSQDGSVEEVDALAHQGYNVR.I	3
*	bob1-05.01510.01510.2	3.7195	0.4157	1769.39	1769.028	1	876.3	67.9%	1	R.YAPGVGIDKDWPMYR.R	2
*	bob1-03.02767.02767.2	5.7666	0.4578	1810.45	1810.118	1	1533.6	81.2%	3	R.PLTIASDPMSGFFGLQK.K	2
*	bob1-03.02287.02287.2	3.2433	0.3817	1392.23	1392.641	1	678.1	75.0%	1	R.VAIGEVPFTFGVR.T	2

MLC1_YEAST

27.5%

149

16444

4.7

(P53141) Myosin-2 light chain

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.03166.03166.2	5.7049	0.4627	2402.71	2403.654	1	1775.7	54.8%	3	R.AIGYNPTNQLVQDIINADSSLR.D	2
*	bob1-05.02820.02820.2	3.2497	0.3673	2045.79	2047.267	1	1064.0	50.0%	2	R.DASSLTLDQITGLIEVNEK.E	2

U	R14A_YEAST	5	10	27.5%	138	15167	10.9	(P36105) 60S ribosomal protein L14-A
U	R14B_YEAST	5	10	27.5%	138	15153	10.9	(P38754) 60S ribosomal protein L14-B

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-04.01819.01819.2	4.6005	0.3839	1213.21	1213.46	1	1740.4	90.0%	3	K.LAAIVEIIDQK.K	2
bob1-05.01534.01534.2	4.195	0.3511	1341.67	1341.634	1	1510.8	77.3%	2	K.LAAIVEIIDQKK.V	2
bob1-02.03335.03335.2	2.5046	0.3607	1614.11	1614.925	1	689.8	57.1%	1	R.QAINLGQVVLTPLTF.A	2
bob1-05.03260.03260.2	3.8568	0.4525	2052.59	2052.468	1	745.6	44.4%	3	R.QAINLGQVVLTPLTFALPR.G	2
bob1-03.01446.01446.1	1.9341	0.1041	892.51	893.135	3	447.4	83.3%	1	R.FQVMVLR.K	1

RL9A_YEAST

27.2%

191

21569

9.7

(P05738) 60S ribosomal protein L9-A (L8) (YL11) (RP25)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-06.01279.01279.1	1.8421	0.1497	795.51	794.975	13	298.0	75.0%	1	R.KHVAALR.T	1 1
	bob1-02.01743.01743.2	4.1494	0.4367	1278.31	1278.507	1	1912.5	86.4%	1	K.SLVDNMITGVTK.G	2 2
	bob1-07.02111.02111.3	3.6382	0.2439	1806.23	1807.102	1	534.3	44.6%	1	R.YVYAHFPINVNIVEK.D	3 3
	bob1-07.02102.02102.2	4.0787	0.4662	1806.57	1807.102	1	986.1	71.4%	2	R.YVYAHFPINVNIVEK.D	2 2
	bob1-06.01708.01708.2	3.6395	0.1972	1307.57	1307.535	2	1374.0	80.0%	2	R.KFLDGIYVSHK.G	2 2
	bob1-04.01250.01250.2	3.6426	0.1709	1179.25	1179.361	1	1164.8	88.9%	1	K.FLDGIYVSHK.G	2 2
*	bob1-01.02739.02739.1	1.862	0.1474	794.4	794.88	8	457.0	75.0%	1	K.GFITEDL.-	1

Similarities: RL9B_YEAST(6:1)

RFA3_YEAST

27.0%

122

13816

4.8

(P26755) Replication factor-A protein 3 (RF-A) (Replication protein A 13 kDa subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01526.01526.2	2.5875	0.3135	1657.93	1658.852	1	990.8	57.1%	1	R.VDPTEISNVNAPVFR.I	2
*	bob1-02.01391.01391.2	4.8671	0.4248	1944.43	1945.177	1	1315.3	58.8%	1	K.SQPTESQLILQSPTISSK.N	2

RL2_YEAST

26.5%

253

27277

11.1

(P05736) 60S ribosomal protein L2 (YL6) (L5) (RP8)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01426.01426.2	3.2567	0.3384	1262.75	1262.411	1	1154.2	81.8%	1	R.KGAGSIFTSHTR.L	2
*	bob1-03.01071.01071.2	2.5539	0.0929	1024.07	1024.208	13	494.4	92.9%	1	K.VVFRDPYK.Y	2
*	bob1-06.02640.02640.3	4.0248	0.3808	3048.5	3049.408	1	402.2	25.0%	2	K.ASLNVGNVLPLGSVPEGTIVSNVEEKPGDR.G	3
*	bob1-06.02648.02648.2	2.6418	0.2712	2563.89	2564.855	10	153.4	25.0%	1	V.GNVLPLGSVPEGTIVSNVEEKPGDR.G	2
*	bob1-07.02486.02486.2	3.6549	0.3892	2182.29	2181.407	1	534.7	42.5%	1	L.PLGSVPEGTIVSNVEEKPGDR.G	2
*	bob1-06.02650.02650.2	2.5614	0.298	1729.13	1727.869	18	289.6	40.0%	1	V.PEGTIVSNVEEKPGDR.G	2
*	bob1-03.01246.01246.2	5.1774	0.4062	1841.45	1842.018	1	1967.6	68.8%	3	R.ASGNYVIIIGHNPDENK.T	2

SRO9_YEAST

26.4%

466

51789

8.7

(P25567) SRO9 protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01772.01772.2	4.1568	0.3459	1951.43	1952.261	1	608.8	52.9%	1	K.SKQVNLTPAPLPTSSPWK.L	2
*	bob1-03.01659.01659.2	2.6065	0.3527	1735.91	1737.009	1	330.1	53.3%	1	K.QVNLTPAPLPTSSPWK.L	2
*	bob1-02.02460.02460.2	4.6144	0.496	2143.19	2142.411	1	1067.8	68.4%	4	K.LAPTEIPVSTISIEDLDATR.K	2
*	bob1-06.03846.03846.2	4.2282	0.3522	2343.47	2344.78	1	904.6	57.9%	3	K.LQQQFYPVQPVLMAINNIAR.Q	2
*	bob1-06.03871.03871.3	4.1775	0.4502	2343.89	2344.78	1	880.0	35.5%	2	K.LQQQFYPVQPVLMAINNIAR.Q	3
*	bob1-06.02727.02727.2	4.2148	0.4584	2298.39	2297.483	1	1437.0	61.8%	3	R.QIEYYFSEENLTVDNYLR.S	2
*	bob1-02.02348.02348.2	2.8204	0.1854	1148.37	1148.345	1	794.0	85.0%	1	K.DGFAPLSLISK.F	2
*	bob1-05.03004.03004.2	4.6583	0.4995	1891.37	1892.224	1	1199.5	58.8%	2	R.VVNMSFGGDTNLILAALR.E	2
*	bob1-05.02995.02995.2	2.8541	0.217	2225.07	2224.431	3	303.2	47.1%	2	K.SWSNWLPETFETEINIEK.E	2

CLC1_YEAST

26.2%

233

26532

4.5

(P17891) Clathrin light chain (CLC)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01380.01380.2	2.5591	0.0931	1153.09	1151.258	1	945.5	83.3%	1	R.EAEILGDEFK.T	2
*	bob1-06.02251.02251.2	3.2498	0.2797	2344.23	2344.496	1	464.0	36.1%	1	K.ELQDEAIKHIDDFYDSYNK.K	2
*	bob1-03.01340.01340.2	2.7808	0.2705	1787.27	1787.842	4	319.6	46.2%	1	K.RDEFFGQDNTTWDR.A	2
*	bob1-03.01702.01702.2	4.8482	0.4261	1712.49	1712.9	1	1724.2	76.7%	3	R.ALQLINQDDADIIGGR.D	2
*	bob1-04.01516.01516.2	3.412	0.2801	1983.85	1984.177	1	506.6	41.2%	1	R.ALQLINQDDADIIGGRDR.S	2

FAS1_YEAST

25.9%

2051

228689

5.9

(P07149) Fatty acid synthase subunit beta (EC 2.3.1.86) [Includes: 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] malonyltransferase (EC 2.3.1.39); S-acyl fatty acid synthase thioesterase (EC 3.1.2.14)]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.02054.02054.2	4.6752	0.4669	2499.03	2498.746	1	634.0	45.7%	2	K.ILPEPTEGFAADDEPTTPAELVGK.F	2
*	bob1-03.01810.01810.2	4.4601	0.5021	1426.69	1426.653	1	1792.3	79.2%	1	K.FLGYVSSLVEPSK.V	2
*	bob1-03.02191.02191.2	4.2603	0.3078	1266.31	1266.437	1	1632.4	90.0%	1	K.FSAETLSELIR.T	2
*	bob1-03.01700.01700.2	3.1544	0.2289	1102.41	1103.307	1	829.3	83.3%	1	K.LLGFTPGELR.S	2
*	bob1-06.02819.02819.2	4.9623	0.4045	2041.71	2042.386	1	1392.8	63.9%	7	K.NLVVSGPPQSLYGLNLTLR.K	2
*	bob1-06.01736.01736.2	2.9031	0.1396	1238.73	1239.419	1	554.9	75.0%	1	R.FLPVASPFHSH.L	2
*	bob1-02.02340.02340.2	4.1889	0.503	1856.89	1855.011	1	808.8	73.3%	3	K.DIQIPVYDTFDGSDLR.V	2
*	bob1-03.01308.01308.2	3.153	0.4202	1426.43	1427.559	2	802.5	65.0%	1	K.NPNWLEEYHPK.L	2
*	bob1-07.04232.04232.3	3.8946	0.3521	3065.96	3067.549	1	1162.0	25.9%	1	K.GYPIQFLTIGAGVPSLEVASEYIETLGLK.Y	3
*	bob1-05.03175.03175.2	3.0898	0.3823	1894.03	1894.154	1	285.4	50.0%	1	K.FDYPPMPFDGFLFGSR.V	2
*	bob1-02.02166.02166.2	3.4261	0.326	1353.27	1353.514	4	915.9	75.0%	2	K.EFDETIFNLPK.N	2
*	bob1-06.02000.02000.2	4.5798	0.436	2063.51	2064.311	1	683.6	55.9%	1	R.LNADFQKPWFATVNGQAR.D	2
*	bob1-03.01479.01479.2	3.6437	0.3362	1526.91	1527.733	1	930.3	70.8%	1	R.DLATMTYEEVAKR.L	2
*	bob1-03.02160.02160.2	3.297	0.3477	1399.33	1399.505	1	983.0	75.0%	2	R.STNSWFDVTWR.T	2
*	bob1-06.02474.02474.2	2.7875	0.2171	2266.69	2264.578	1	569.7	39.5%	1	K.TLSLIQSYSLLDKPDEAIEK.V	2
*	bob1-03.01134.01134.2	3.6128	0.2734	1358.07	1358.532	1	1012.0	81.8%	1	Y.SLLDKPDEAIEK.V	2
*	bob1-04.01775.01775.3	4.2245	0.3032	2255.57	2255.406	1	1232.3	38.9%	1	K.DSLWQSEHLEAVVDQDVQR.T	3
*	bob1-04.01772.01772.2	4.9055	0.412	2255.95	2255.406	1	1699.3	55.6%	1	K.DSLWQSEHLEAVVDQDVQR.T	2
*	bob1-02.01311.01311.2	2.7714	0.4102	1388.03	1388.43	1	847.1	63.6%	1	K.ATSSTDEESWFK.A	2
*	bob1-06.02082.02082.2	3.3604	0.4257	2151.55	2152.58	1	296.1	39.5%	1	K.TVVTLSEPVQGELKPTVILK.L	2
*	bob1-06.02036.02036.2	5.0383	0.409	1874.63	1875.252	1	2114.1	82.1%	1	K.LLKENIIQMEMIENR.T	2
*	bob1-04.02982.02982.2	4.7564	0.536	1777.05	1777.974	1	1675.3	84.6%	4	K.LWIDEPFNLDFDPR.D	2
*	bob1-05.02779.02779.2	3.8701	0.5387	2439.25	2439.769	1	856.4	41.3%	1	K.PLQVGDVVSTTAVIESVVNQPTGK.I	2
*	bob1-07.01944.01944.2	3.8695	0.4231	1763.75	1763.021	1	543.2	64.3%	2	R.NGKPVMEVTSSFFYR.G	2
*	bob1-02.01351.01351.2	3.332	0.4128	1464.05	1464.531	1	1002.0	72.7%	1	R.GNYTDFENTFQK.T	2
*	bob1-04.02876.02876.2	2.788	0.3719	1927.55	1928.062	2	379.0	42.9%	1	K.EWFQLDDEDFDLLNK.T	2
*	bob1-02.01226.01226.1	1.8429	0.1939	979.43	980.109	80	245.0	62.5%	1	K.NANIFSSVK.C	1
*	bob1-03.02848.02848.2	4.3399	0.4352	2774.19	2775.087	1	621.2	41.7%	1	K.VNLENPIPIAVLDSYTPSTNEPYAR.V	2
*	bob1-02.03004.03004.3	4.9438	0.4223	2775.59	2775.087	1	1062.8	33.3%	1	K.VNLENPIPIAVLDSYTPSTNEPYAR.V	3
*	bob1-03.01106.01106.2	4.2255	0.3422	1294.55	1294.453	1	1070.6	81.8%	1	R.VSGDLNPIHVSR.H	2
*	bob1-02.01543.01543.2	4.209	0.4502	1519.21	1519.654	1	1568.4	73.1%	1	R.ALIENWAADSVSSR.V	2
*	bob1-06.03148.03148.2	4.1868	0.5564	1717.77	1717.931	1	1263.8	67.9%	3	R.ENYSAMIFETIVDGK.L	2
*	bob1-03.02826.02826.2	5.7629	0.5174	1949.53	1950.301	1	1017.7	61.8%	9	K.GLLSATQFTQPALTLMEK.A	2
*	bob1-03.02098.02098.2	5.1107	0.5288	1797.83	1798.006	1	2470.0	73.3%	3	R.VAASFSQEALQYVVER.V	2
*	bob1-03.02794.02794.2	5.061	0.3956	1448.17	1448.703	1	1516.4	83.3%	2	R.ALDTVTNVLNFIK.L	2
*	bob1-05.01371.01371.2	2.8145	0.3874	1620.45	1620.932	2	314.7	57.7%	2	K.YIPNLTAKPFQVTK.E	2
*	bob1-02.02135.02135.2	3.7271	0.4203	1905.11	1905.068	1	899.3	60.0%	1	K.EYFQDVYDLTGSEPIK.E	2

RS5_YEAST

25.9%

224

24907

8.6

(P26783) 40S ribosomal protein S5 (S2) (YS8) (RP14)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01715.01715.2	3.5209	0.2931	1153.63	1153.277	1	1058.6	93.8%	3	K.WSFEEVEVK.D	2
*	bob1-02.01566.01566.2	3.8669	0.3798	1264.99	1265.409	1	1487.3	85.0%	2	K.DASLVDYVQVR.Q	2
*	bob1-02.01152.01152.2	3.5682	0.171	1137.47	1137.358	1	1081.7	88.9%	1	R.LTNSLMMNGR.N	2
*	bob1-05.01868.01868.2	5.1531	0.3232	1343.35	1340.609	1	2188.4	83.3%	7	R.VNQAIALLTIGAR.E	2
*	bob1-06.03540.03540.2	4.95	0.3016	1586.49	1587.811	1	2233.8	78.6%	25	K.TIAETLAEELINAAK.G	2
*	bob1-03.03150.03150.3	4.7813	0.3049	1587.5	1587.811	1	2889.7	60.7%	1	K.TIAETLAEELINAAK.G	3

NDI1_YEAST

25.3%

513

57250

9.4

(P32340) Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor (EC 1.6.5.3) (Internal NADH dehydrogenase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01024.01024.2	4.2582	0.4842	1439.95	1439.522	1	1555.3	75.0%	1	R.STGVENSGAGPTSFK.T	2
*	bob1-04.01088.01088.2	3.1405	0.2646	1176.81	1177.389	3	875.0	77.8%	1	K.KYNVSIISPR.S	2
*	bob1-03.03106.03106.2	3.9309	0.5007	2181.25	2182.521	1	518.1	52.6%	6	R.SYFLFTPLLPSAPVGTVDEK.S	2
*	bob1-03.02562.02562.2	3.5587	0.3011	1344.07	1344.637	1	819.4	86.4%	3	K.SIIEPIVNFALK.K	2
*	bob1-06.01886.01886.3	3.8399	0.3753	2860.61	2861.184	1	737.3	29.0%	1	K.SLSAVSQLYQPENHLGLHQAEPAEIK.Y	3
*	bob1-05.01491.01491.2	3.2059	0.2239	1160.21	1160.402	9	736.7	72.2%	1	K.ARPVITDLFK.K	2
*	bob1-02.01146.01146.1	2.3962	0.169	1075.55	1075.123	14	321.7	62.5%	1	A.QVAHQEAEY.L	1
*	bob1-06.02588.02588.2	3.9735	0.3429	1754.23	1755.023	1	1121.2	69.2%	2	K.IDLLFEENNFKPFK.Y	2
*	bob1-03.01895.01895.2	4.4138	0.2502	1542.23	1542.689	1	2254.4	76.9%	4	K.YNDLGALAYLGSER.A	2

DLDH_YEAST

25.3%

499

54010

8.0

(P09624) Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01983.01983.2	5.1981	0.4957	1824.65	1825.118	1	1655.6	72.2%	3	K.SHDVVIIGGGPAGYVAAIK.A	2
*	bob1-06.02043.02043.2	3.3066	0.363	2164.57	2165.448	6	306.2	34.2%	1	R.VTPVDGLEGTVKEDHILDVK.N	2
*	bob1-03.02367.02367.2	5.1773	0.449	2362.49	2359.635	1	852.6	54.8%	3	K.NIIVATGSEVTPFPGIEIDEEK.I	2
*	bob1-03.01746.01746.2	4.767	0.4887	2106.21	2106.399	1	1100.3	71.1%	1	K.VTVVEFQPQIGASMDGEVAK.A	2
*	bob1-06.02667.02667.2	3.6908	0.3495	1983.57	1984.26	1	1411.9	58.8%	1	K.TNKQENLEAEVLLVAVGR.R	2
*	bob1-06.02628.02628.3	3.8155	0.2892	1984.37	1984.26	4	748.8	32.4%	1	K.TNKQENLEAEVLLVAVGR.R	3
*	bob1-04.01411.01411.2	3.1834	0.326	1470.91	1471.758	1	1262.2	69.2%	1	K.VVGDVTFGPMLAHK.A	2
*	bob1-02.01660.01660.2	4.3806	0.4556	1390.15	1390.592	1	1423.4	79.2%	1	K.AEEEGIAAVEMLK.T	2

U	R15A_YEAST	4	4	25.1%	203	24291	11.4	(P05748) 60S ribosomal protein L15-A (YL10) (L13) (RP15R) (YP18)
U	R15B_YEAST	4	4	25.1%	203	24291	11.4	(P54780) 60S ribosomal protein L15-B (YL10) (L13) (RP15R) (YP18)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-03.00930.00930.2	4.5256	0.4603	1677.05	1677.855	1	555.3	63.3%	1	K.GATYGKPTNQGVNELK.Y	2
bob1-02.01371.01371.2	4.6443	0.5091	1718.01	1717.875	1	831.3	65.4%	1	R.VLNSYWVNQDSTYK.Y	2
bob1-06.01995.01995.2	4.4581	0.3988	1488.57	1488.726	1	1532.0	81.8%	1	K.YFEVILVDPQHK.A	2
bob1-06.01624.01624.2	3.0601	0.3327	1174.09	1174.348	1	1279.3	93.8%	1	K.RQNTLSLWR.Y	2

RL28_YEAST

24.3%

148

16591

10.5

(P02406) 60S ribosomal protein L28 (L27A) (L29) (YL24) (RP62)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01508.01508.2	3.2801	0.2568	1271.69	1271.502	7	652.0	72.2%	1	K.LWTLIPEDKR.D	2
*	bob1-02.01587.01587.2	4.0188	0.5173	1505.83	1506.696	1	1155.4	67.9%	1	K.ETAPVIDTLAAGYGK.I	2
*	bob1-06.01592.01592.2	3.2968	0.2081	1193.09	1192.49	1	947.7	80.0%	1	K.GRIPNVPVIVK.A	2
*	bob1-03.01343.01343.2	2.7778	0.2059	978.51	979.251	2	608.8	87.5%	1	R.IPNVPVIVK.A	2

RM19_YEAST

24.1%

158

16670

9.9

(P53875) 60S ribosomal protein L19, mitochondrial precursor (YmL19)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01347.01347.2	3.9784	0.5181	1887.53	1888.217	1	594.7	52.5%	1	K.LIVGAGQAAPSPPVGPALGSK.G	2
*	bob1-04.01076.01076.2	3.1347	0.4663	1622.87	1622.839	1	367.8	46.9%	1	K.GHGQPNVGTMLGSAPAK.G	2

RL11_YEAST

23.7%

173

19588

9.9

(P06380) 60S ribosomal protein L11 (L16) (YL16) (39A) (RP39)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.01742.01742.2	2.5186	0.1274	1729.95	1729.974	8	363.2	40.0%	1	K.LVLNISVGESGDRLTR.A	2
*	bob1-02.01122.01122.2	4.7573	0.3866	1514.17	1514.719	1	1672.1	76.9%	1	K.VLEQLSGQTPVQSK.A	2
*	bob1-03.01260.01260.2	3.5503	0.2793	1342.07	1342.491	1	921.2	75.0%	1	K.TTKEDTVSWFK.Q	2
*	bob1-02.01466.01466.1	1.8186	0.251	1012.46	1012.107	94	178.9	50.0%	1	K.EDTVSWFK.Q	1

IF3X_YEAST

23.6%

1277

145165

6.4

(Q03690) Eukaryotic translation initiation factor 3 135 kDa subunit (eIF3 p135) (Translation initiation factor eIF3, p135 subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.03151.03151.2	4.159	0.5314	1615.29	1615.969	1	1077.9	57.1%	4	K.IQTVLDVLAMIPSSK.Y	2
*	bob1-03.01698.01698.1	1.8809	0.1245	987.37	988.258	3	586.8	78.6%	1	K.LQLILKPY.S	1
*	bob1-07.02150.02150.2	4.6636	0.4184	1602.07	1601.817	1	1418.5	83.3%	3	K.FNEMVHEVFSSFK.N	2
*	bob1-03.02382.02382.2	3.2945	0.4301	1755.37	1756.014	1	436.0	53.6%	3	R.SLSFAPYNPVPPFYR.S	2
*	bob1-03.02283.02283.2	3.3209	0.2565	1021.31	1022.189	1	1272.1	87.5%	1	Y.SLFDLIASR.S	2
*	bob1-03.02139.02139.2	3.9933	0.4505	1961.43	1962.184	1	955.3	59.4%	2	M.SIFYSDFVAMNPESPTR.D	2
*	bob1-05.02295.02295.2	4.7265	0.4891	2056.91	2058.165	1	1418.4	55.9%	4	K.DNIFYSYVSDVSGNYEGK.G	2
*	bob1-05.02255.02255.2	3.0926	0.4086	1369.13	1369.604	1	1519.6	86.4%	1	R.YLLTTVVEFAGR.R	2
*	bob1-03.02130.02130.2	4.3253	0.5257	1724.39	1725.1	1	804.2	65.6%	1	R.ILAQTPVPGLLATMGNK.I	2
*	bob1-03.02054.02054.2	5.4303	0.3998	2111.27	2110.196	1	1836.3	69.4%	4	K.DANTGEEVTEDFVNDINVK.Y	2
*	bob1-02.01832.01832.2	3.7067	0.4227	1515.07	1514.672	1	1440.9	83.3%	1	K.IVYDADFDSVLEK.K	2
*	bob1-03.03090.03090.2	4.9359	0.5235	2013.25	2013.301	1	1143.9	65.6%	7	R.YILDLANTYPLDINFAR.Q	2
*	bob1-03.01208.01208.2	3.2147	0.2257	1326.57	1326.579	1	856.9	80.0%	1	R.QTLLRPELVEK.W	2
*	bob1-05.02874.02874.3	5.683	0.4652	3860.42	3861.095	1	1433.2	32.0%	4	K.AYEENLFSYNPDAYQVEGIEDANVDEMSNYLQK.E	3
*	bob1-03.01342.01342.2	4.7226	0.4303	1716.51	1716.888	1	1100.8	73.1%	1	K.ELDSQIVHYEQNLK.A	2
*	bob1-03.01535.01535.2	3.575	0.1189	932.23	933.139	1	1404.8	100.0%	1	K.FGIQLLNK.E	2
*	bob1-04.03016.03016.2	3.4518	0.509	2033.15	2034.36	1	572.1	55.9%	3	K.FVEPPTTFSLSDLTIIPR.V	2
*	bob1-05.01382.01382.2	4.1837	0.2442	1558.41	1558.818	1	1164.4	73.1%	2	R.ALEHITVTQGIFTK.Q	2
*	bob1-04.03092.03092.2	3.9354	0.4258	1604.25	1604.905	1	1217.0	73.1%	3	R.QWVNGLSSLIMDLK.Q	2
*	bob1-03.02734.02734.2	5.5356	0.5384	1841.39	1841.967	1	2369.4	71.9%	2	K.SVDELLTFIEGDSSNSK.S	2

RL6A_YEAST

23.4%

175

19830

10.1

(Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01239.01239.2	2.8121	0.2461	1406.79	1407.609	1	545.0	68.2%	1	K.WYPSEDVAALKK.T	2
	bob1-06.03584.03584.2	3.7939	0.471	1479.77	1480.834	1	563.4	67.9%	8	R.ASLVPGTVLILLAGR.F	2 2
	bob1-07.03403.03403.1	2.0776	0.3082	1109.54	1110.385	106	244.0	40.0%	2	V.PGTVLILLAGR.F	1 1
*	bob1-06.02006.02006.2	4.8929	0.1535	1584.61	1584.812	1	1302.9	76.9%	2	K.HLEDNTLLISGPFK.V	2

Similarities: RL6B_YEAST(2:2)

GR78_YEAST

23.3%

682

74468

4.9

(P16474) 78 kDa glucose-regulated protein homolog precursor (GRP 78) (Immunoglobulin heavy chain binding protein homolog) (BiP)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01835.01835.2	3.1964	0.348	2182.23	2183.423	1	687.4	47.4%	1	R.ITPSYVAFTDDERLIGDAAK.N	2
*	bob1-02.01556.01556.2	4.202	0.5103	1673.23	1673.866	1	1313.1	78.6%	1	K.NQVAANPQNTIFDIK.R	2
*	bob1-03.02862.02862.2	3.772	0.393	1520.93	1521.812	1	1038.4	73.1%	2	K.VFTPEEISGMILGK.M	2
*	bob1-04.01328.01328.2	4.4029	0.5553	1888.31	1889.121	1	969.3	68.8%	2	K.VTHAVVTVPAYFNDAQR.Q	2
*	bob1-04.01332.01332.3	4.7608	0.5038	1888.94	1889.121	1	1436.4	50.0%	1	K.VTHAVVTVPAYFNDAQR.Q	3
	bob1-02.01719.01719.1	2.6825	0.2987	1081.44	1082.161	1	402.7	75.0%	3	V.PAYFNDAQR.Q	1 1 1 1
	bob1-04.01307.01307.2	3.5831	0.3801	1628.55	1628.869	1	683.8	60.0%	1	R.QATKDAGTIAGLNVLR.I	2 2 2 2
	bob1-02.01666.01666.2	4.1582	0.2449	1200.05	1200.381	1	1645.6	95.5%	2	K.DAGTIAGLNVLR.I	2 2 2 2
*	bob1-02.01650.01650.2	3.8195	0.3177	1648.15	1646.881	1	791.3	60.0%	1	R.IVNEPTAAAIAYGLDK.S	2
*	bob1-04.02928.02928.2	5.2937	0.5578	2023.47	2024.232	1	1934.5	67.6%	4	R.IEIDSFVDGIDLSETLTR.A	2
*	bob1-02.01447.01447.2	4.0509	0.4689	1346.95	1346.48	1	1434.2	79.2%	1	K.DVDDIVLVGGSTR.I	2
*	bob1-02.01816.01816.2	2.739	0.3031	1427.69	1427.597	1	931.1	68.2%	1	K.VQQLLESYFDGK.K	2
*	bob1-04.01424.01424.2	3.2697	0.1704	1555.19	1555.771	1	928.3	66.7%	1	K.VQQLLESYFDGKK.A	2
*	bob1-02.01634.01634.2	3.1449	0.2531	1878.55	1880.166	1	599.7	56.2%	1	K.SQIFSTAVDNQPTVMIK.V	2

Similarities: HS71_YEAST(2:12)
HS76_YEAST(1:13)
HS75_YEAST(1:13)
HS72_YEAST(2:12)
HS74_YEAST(2:12)
HS7E_YEAST(1:13)

YNV8_YEAST

23.3%

587

66544

8.4

(P40151) Hypothetical 66.5 kDa protein in ALG9-RAP1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01436.01436.2	5.3254	0.3955	2064.59	2064.262	1	1363.6	64.7%	3	R.DYVGQQHILSQDNGTLFK.Y	2
*	bob1-03.02439.02439.2	3.4656	0.4043	1738.11	1739.086	2	369.1	40.6%	2	K.QGTIPSMILWGPPGVGK.T	2
*	bob1-04.01512.01512.2	3.3386	0.2099	1243.29	1243.448	1	1426.4	83.3%	1	R.TVLFIDEIHR.F	2
*	bob1-05.01363.01363.2	3.0969	0.1169	1369.19	1369.607	1	1309.0	75.0%	1	R.KQVWNIENPLK.L	2
*	bob1-05.02758.02758.2	3.1753	0.294	1506.59	1507.804	1	769.2	62.5%	1	R.ALNMLEMIEVSTR.E	2
*	bob1-04.01955.01955.2	2.6171	0.1318	1860.57	1861.013	2	505.8	43.3%	1	K.ADEEELSIDDVRDIIK.N	2
*	bob1-02.01356.01356.2	4.2223	0.3441	1449.01	1449.665	1	1650.9	79.2%	1	R.MLQGGEDPLYVAR.R	2
*	bob1-06.02528.02528.2	4.539	0.5229	1738.73	1739.04	1	898.0	71.9%	4	R.DSSLLPLAVAAHDAVMK.V	2
*	bob1-06.02479.02479.1	2.13	0.1168	929.76	928.094	6	367.7	62.5%	1	A.AHDAVMKVG.L	1
*	bob1-07.02436.02436.2	3.4422	0.2384	2298.31	2299.698	1	495.7	42.1%	1	R.AMMSENMYSLASSEIPMHIR.N	2

GLYM_YEAST

23.3%

490

53660

8.7

(P37292) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02712.02712.2	2.8826	0.3942	3175.03	3176.566	1	194.1	28.6%	1	G.LLTSGAQSLVSKPVSEGDPEMFDILQQER.H	2
*	bob1-07.02518.02518.3	7.498	0.5708	3175.52	3176.566	1	2148.9	36.6%	7	G.LLTSGAQSLVSKPVSEGDPEMFDILQQER.H	3
*	bob1-07.02554.02554.2	2.6498	0.3362	2117.55	2119.354	3	291.0	32.4%	4	S.KPVSEGDPEMFDILQQER.H	2
*	bob1-06.02704.02704.2	2.5451	0.2416	1990.89	1991.18	1	342.0	40.6%	1	K.PVSEGDPEMFDILQQER.H	2
*	bob1-05.01330.01330.2	4.1033	0.3439	1575.59	1574.774	1	884.9	76.9%	2	K.HSITLIPSENFTSK.A	2
*	bob1-02.01644.01644.1	2.949	0.2498	1190.58	1190.382	1	822.3	65.0%	1	R.ALELYGLDPAK.W	1
*	bob1-02.01042.01042.2	3.4874	0.3067	1123.91	1124.282	1	1777.6	90.0%	1	K.VIVAGTSAYSR.L	2
*	bob1-06.02108.02108.2	5.7175	0.5058	2437.75	2438.7	1	1590.8	50.0%	1	K.LVSGGTDNHLIVIDLSGTQVDGAR.V	2
*	bob1-06.02114.02114.3	3.8098	0.3686	2438.39	2438.7	1	1114.4	30.4%	1	K.LVSGGTDNHLIVIDLSGTQVDGAR.V	3
*	bob1-02.02511.02511.2	4.9855	0.3893	1458.17	1457.71	1	2326.3	84.6%	3	R.VETILSALNIAANK.N	2
*	bob1-01.02886.02886.1	2.7031	0.2086	1232.53	1231.393	7	557.1	65.0%	3	K.WVGQYPVPGDI.-	1

CLH_YEAST

23.2%

1653

187233

5.2

(P22137) Clathrin heavy chain

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01398.01398.1	2.8681	0.3368	1302.25	1303.455	1	473.1	58.3%	1	K.DGTNSVAIVDLAK.G	1
*	bob1-02.01392.01392.2	4.0794	0.397	1303.07	1303.455	1	1119.4	79.2%	1	K.DGTNSVAIVDLAK.G	2
*	bob1-05.01436.01436.2	4.1606	0.349	2032.01	2031.371	1	501.4	50.0%	2	K.NMGGDSAIMHPSQMVISVR.A	2
*	bob1-04.02110.02110.2	4.0387	0.3518	1548.01	1548.779	1	1239.5	69.2%	4	R.ANGTIVQIFNLETK.S	2
*	bob1-03.02886.02886.2	4.1232	0.4399	1511.15	1510.732	1	1099.6	72.7%	2	K.SFTLDEPVIFWR.W	2
*	bob1-03.02072.02072.2	4.403	0.456	1482.99	1481.692	1	1180.3	70.8%	3	R.WLSETTLGFVTAR.S	2
*	bob1-06.01790.01790.2	5.776	0.4413	1812.29	1812.038	1	3015.0	83.3%	1	R.HANLNNTQIINFVANK.N	2
*	bob1-03.01206.01206.2	4.6017	0.4148	1857.43	1858.058	1	1160.4	70.0%	1	R.IIEIDHDASLPSQYQK.E	2
*	bob1-02.01535.01535.2	2.8597	0.3787	1217.67	1218.352	1	358.2	68.2%	1	R.GGLPGADDLFQK.Q	2
*	bob1-06.04358.04358.2	3.7275	0.3791	2371.65	2372.81	1	593.4	54.8%	3	K.NIQAPPGAISPILLYFSTLLDK.G	2
*	bob1-07.04206.04206.3	5.5376	0.4472	2372.21	2372.81	1	1800.4	39.3%	2	K.NIQAPPGAISPILLYFSTLLDK.G	3
*	bob1-07.04198.04198.2	3.5317	0.3362	1820.69	1820.185	1	605.6	56.7%	1	K.VGYQPNFLVLISSLIR.S	2
*	bob1-03.02255.02255.2	6.0703	0.4803	2390.95	2391.637	1	1582.3	57.1%	3	R.ASEFAVSLLQNPETASQIDIEK.I	2
*	bob1-07.03803.03803.2	3.1063	0.431	1478.99	1479.762	1	542.8	66.7%	1	N.ALPIDWLVGYFGK.L	2
*	bob1-02.01310.01310.2	4.5119	0.4333	1552.81	1553.755	1	2296.1	83.3%	1	K.FIETYVQQVNPSK.T	2
*	bob1-03.03342.03342.3	5.5886	0.4901	2762.36	2761.191	1	1893.0	39.6%	7	K.ILLPFLEQSLSQGIQDQAVYNALAK.I	3
*	bob1-04.01371.01371.2	3.315	0.3483	1502.41	1502.71	1	1190.4	72.7%	1	K.RDPYLAYIAYEK.G	2
*	bob1-07.04158.04158.2	4.9613	0.485	2592.57	2594.11	1	835.3	50.0%	3	K.IILEPSPFNENVALQGLLLLSAIK.Y	2
*	bob1-03.02334.02334.2	4.104	0.3596	1304.19	1304.544	1	1858.0	90.0%	1	K.VLIEDIMSLDR.A	2
*	bob1-03.02622.02622.2	4.9523	0.5093	2113.73	2113.378	1	1483.1	63.9%	2	K.INTPELWSQIGTAQLDGLR.I	2
*	bob1-02.02002.02002.2	5.5062	0.5343	2063.51	2064.17	1	1876.1	66.7%	1	K.AEDPSNYENVIDIAEQAGK.Y	2
*	bob1-06.02779.02779.2	4.8816	0.3036	1504.47	1504.767	1	1776.4	76.9%	3	K.IDGALILAYAELNK.I	2
*	bob1-03.02126.02126.2	5.2538	0.522	2027.85	2028.269	1	1379.8	66.7%	4	K.LASTLVYLGDYQAAVDTAR.K	2
*	bob1-06.02396.02396.2	5.5371	0.4742	2411.89	2412.59	1	1532.4	52.6%	2	K.NNSVVNQAYHDLMIEEEDYK.A	2
*	bob1-06.02176.02176.2	4.1707	0.4826	2214.87	2213.409	1	805.2	44.7%	2	K.ALQDAVDSYDKFDQLGLASR.L	2

RS3A_YEAST

23.2%

254

28612

10.0

(P33442) 40S ribosomal protein S1-A (RP10A)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-06.02230.02230.2	4.4346	0.342	1755.31	1754.955	1	1555.4	71.4%	1	K.NLLTNFHGMDFTTDK.L	2 2
bob1-06.02115.02115.2	3.4114	0.2825	1711.23	1711.996	1	349.5	60.7%	1	K.LIPEVINKEIENATK.D	2 2
bob1-06.02075.02075.2	3.2259	0.3273	1352.33	1352.579	1	813.2	80.0%	3	K.DIFPLQNIHVR.K	2 2
bob1-07.02030.02030.2	4.1981	0.4247	1847.17	1848.037	1	1249.4	64.7%	3	K.FDVGALMALHGEGSGEEK.G	2 2

Similarities: RS3B_YEAST(4:0)

RS11_YEAST

23.2%

155

17618

10.8

(P26781) 40S ribosomal protein S11 (S18) (YS12) (RP41)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01055.01055.2	2.6259	0.1722	1005.71	1005.205	5	651.5	78.6%	1	R.AYLHYIPK.Y	2
*	bob1-05.01090.01090.1	2.104	0.1939	1222.6	1223.42	2	198.2	55.0%	1	K.NVPVHVSPAFR.V	1
*	bob1-05.01102.01102.1	2.0572	0.1825	1009.59	1010.184	6	310.7	62.5%	1	V.PVHVSPAFR.V	1
*	bob1-04.01235.01235.2	4.0049	0.4061	1857.33	1857.127	1	720.1	53.1%	1	R.VQVGDIVTVGQCRPISK.T	2

U	R36A_YEAST	2	2	23.2%	99	10993	11.6	(P05745) 60S ribosomal protein L36-A (L39A) (YL39)
U	R36B_YEAST	2	2	23.2%	99	11004	11.6	(O14455) 60S ribosomal protein L36-B (L39B) (YL39)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01196.01196.1	2.1803	0.2434	886.58	887.067	1	651.2	75.0%	1	K.TGIAIGLNK.G	1
	bob1-03.01162.01162.2	4.2084	0.4599	1546.47	1546.782	1	1945.8	80.8%	1	K.AKVEEMNNIIAASR.R	2

R13B_YEAST

23.1%

199

22525

11.1

(P40212) 60S ribosomal protein L13-B

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01155.01155.2	3.78	0.2885	1334.09	1334.431	1	1146.2	85.0%	1	R.NQEIFDANVQR.L	2 2
2	bob1-03.01278.01278.1	1.8822	0.2205	744.44	744.955	27	369.2	80.0%	1	K.IIVFPR.D	1 1
*	bob1-06.02686.02686.3	3.6369	0.2376	2953.25	2955.251	1	622.4	25.9%	2	R.DGKAPEAEQVLSAAATFPIAQPATDVEAR.A	3
	bob1-03.02488.02488.2	5.7743	0.5447	2655.61	2654.937	1	1312.9	52.0%	1	K.APEAEQVLSAAATFPIAQPATDVEAR.A	2 2
	bob1-06.02680.02680.1	2.7421	0.4143	1267.59	1268.412	1	480.6	63.6%	1	F.PIAQPATDVEAR.A	1 1

Similarities: R13A_YEAST(4:1)

IF2G_YEAST

23.0%

527

57866

6.8

(P32481) Eukaryotic translation initiation factor 2 gamma subunit (eIF-2-gamma)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01579.01579.2	3.6421	0.3695	2090.45	2091.238	1	1127.2	61.1%	1	R.EFEEGGGLPEQPLNPDFSK.L	2
*	bob1-02.01516.01516.2	3.9379	0.3845	1240.09	1240.445	1	1022.7	95.0%	1	K.LNPLSAEIINR.Q	2
*	bob1-02.01787.01787.2	3.3176	0.4118	1651.41	1651.944	2	512.0	59.4%	1	R.GTIADGAPIVPISAQLK.Y	2
*	bob1-03.01866.01866.2	4.1579	0.2509	1425.25	1425.624	1	2021.3	90.9%	2	K.YNIDAVNEFIVK.T	2
*	bob1-03.01290.01290.2	4.0671	0.379	1663.39	1662.837	1	573.7	64.3%	1	R.SFDVNKPGAEIEDLK.G	2
*	bob1-03.01318.01318.2	3.5323	0.2851	1540.73	1540.8	3	708.5	53.8%	1	K.LGDEIEIRPGIVTK.D	2
*	bob1-03.01742.01742.1	2.5254	0.3318	1215.64	1216.466	1	574.8	62.5%	1	K.FAVPGGLIGVGTK.V	1
*	bob1-03.01730.01730.2	3.3497	0.4252	1216.27	1216.466	1	507.9	75.0%	1	K.FAVPGGLIGVGTK.V	2
*	bob1-06.01984.01984.2	4.7987	0.4779	2101.57	2101.426	1	1177.9	55.3%	1	R.KLEPNEVLMVNIGSTATGAR.V	2

U	RL7A_YEAST	5	9	23.0%	243	27507	10.1	(P05737) 60S ribosomal protein L7-A (L6A) (YL8A) (RP11)
U	RL7B_YEAST	5	9	23.0%	243	27565	10.1	(Q12213) 60S ribosomal protein L7-B (L6B) (YL8B)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-02.02080.02080.2	2.6625	0.3415	1992.39	1993.266	1	741.5	50.0%	2	K.LIEPYVAYGYPSYSTIR.Q	2
bob1-05.01358.01358.2	4.2555	0.4218	1839.73	1839.102	1	746.0	53.1%	2	K.QRVPLSDNAIIEANLGK.Y	2
bob1-03.01510.01510.2	4.6857	0.2292	1554.75	1554.784	1	1648.2	71.4%	2	R.VPLSDNAIIEANLGK.Y	2
bob1-03.02371.02371.2	2.6776	0.2875	1265.23	1265.457	2	528.4	72.2%	2	K.QANNFLWPFK.L	2
bob1-03.01168.01168.2	3.2069	0.2698	1227.89	1227.365	1	896.4	81.8%	1	K.LSNPSGGWGVPR.K	2

RTS8_YEAST

22.6%

155

17471

9.6

(Q03799) Mitochondrial 40S ribosomal protein S8

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01336.01336.2	2.7	0.0929	2266.51	2267.472	2	301.4	40.0%	1	K.GSTMGPDKDFVEVTPDNISTR.R	2
*	bob1-04.01211.01211.2	4.2992	0.4399	1569.47	1570.761	1	1028.8	61.5%	1	R.AHNNIMDINEAISK.K	2

RL35_YEAST

22.5%

120

13910

10.6

(P39741) 60S ribosomal protein L35

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01295.01295.2	3.7161	0.0825	1460.55	1459.683	1	1547.0	75.0%	1	K.SKEQLASQLVDLK.K	2
*	bob1-04.01132.01132.2	4.7084	0.3403	1586.89	1587.857	1	1875.4	76.9%	1	K.SKEQLASQLVDLKK.E	2
*	bob1-03.01044.01044.2	3.7907	0.3498	1452.65	1452.648	1	1320.2	83.3%	1	R.ALTKFEASQVTEK.Q	2

CALM_YEAST

22.4%

147

16135

4.3

(P06787) Calmodulin (CaM)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01887.01887.2	4.052	0.4441	1510.17	1510.598	1	1530.0	70.8%	1	K.SNDSEQELLEAFK.V	2
*	bob1-02.03130.03130.2	5.1132	0.4039	2107.09	2107.325	1	1237.1	60.5%	4	R.EVSDGSGEINIQQFAALLSK.-	2

RS37_YEAST

22.4%

8677

10.1

(P05759) 40S ribosomal protein S37 (CEP76) (YS24)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01388.01388.1	1.8174	0.1529	958.41	957.158	2	518.6	71.4%	1	K.LAVLSYYK.V	1
*	bob1-06.01727.01727.2	3.9339	0.351	1556.29	1556.799	1	1240.4	69.2%	1	K.LAVLSYYKVDAEGK.V	2
*	bob1-06.01703.01703.2	3.3428	0.3245	1886.25	1885.211	1	778.0	46.9%	1	K.LAVLSYYKVDAEGKVTK.L	2

RS25_YEAST

22.2%

108

12009

10.3

(P07282) 40S ribosomal protein S25 precursor (S31) (YS23) (RP45)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.00774.00774.1	2.3663	0.1961	729.48	729.855	1	824.1	68.8%	1	K.AAAALAGGK.K	1
*	bob1-03.00678.00678.2	2.8448	0.136	857.49	858.029	1	500.5	77.8%	1	K.AAAALAGGKK.S	2
*	bob1-03.01075.01075.2	4.1427	0.4226	1686.81	1686.865	1	1777.0	76.9%	1	R.AQHAVILDQEKYDR.I	2

U	RS9A_YEAST	5	6	21.9%	196	22312	10.0	(O13516) 40S ribosomal protein S9-A (S13) (YS11) (RP21) (YP28)
U	RS9B_YEAST	5	6	22.2%	194	22167	10.1	(P05755) 40S ribosomal protein S9-B (S13) (YS11) (RP21) (YP28)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-02.01452.01452.2	3.3154	0.2253	1033.21	1033.216	12	571.7	81.2%	1	R.LFEGNALIR.R	2
bob1-04.01343.01343.1	2.1299	0.2387	1062.57	1063.326	9	477.1	68.8%	1	K.KLDYVLALK.V	1
bob1-04.01335.01335.2	2.8152	0.2484	1063.21	1063.326	7	692.0	81.2%	1	K.KLDYVLALK.V	2
bob1-03.02068.02068.2	2.7329	0.2667	1303.69	1304.593	1	732.3	75.0%	1	K.QIVNIPSFMVR.L	2
bob1-05.01343.01343.2	3.8049	0.3271	1472.91	1473.631	1	1072.3	73.1%	2	K.HIDFAPTSPFGGAR.P	2

RLP7_YEAST

21.7%

322

36559

9.5

(P40693) Ribosome biogenesis protein RLP7 (Ribosomal protein L7-like)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02007.02007.2	3.4015	0.0836	2364.69	2366.587	377	151.4	31.0%	1	A.SGKDFILKITEKANGAEENSVD.L	2
*	bob1-03.00894.00894.3	3.6089	0.1762	2044.52	2044.572	4	330.7	33.8%	1	K.LTKNVYPLLKVIAPYVVI.G	3
*	bob1-07.01982.01982.2	3.3594	0.2876	1799.79	1800.195	1	673.4	56.2%	1	K.VIAPYVVIGKPSLSSIR.S	2
*	bob1-03.03119.03119.2	3.0173	0.3141	2204.63	2203.497	2	300.4	35.0%	1	R.QFSNAATAPVIEVDIDSLLAK.L	2 3

R13A_YEAST

21.6%

199

22554

11.2

(Q12690) 60S ribosomal protein L13-A

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01155.01155.2	3.78	0.2885	1334.09	1334.431	1	1146.2	85.0%	1	R.NQEIFDANVQR.L	2 2
2	bob1-03.01278.01278.1	1.8822	0.2205	744.44	744.955	27	369.2	80.0%	1	K.IIVFPR.N	1 1
	bob1-03.02488.02488.2	5.7743	0.5447	2655.61	2654.937	1	1312.9	52.0%	1	K.APEAEQVLSAAATFPIAQPATDVEAR.A	2 2
	bob1-06.02680.02680.1	2.7421	0.4143	1267.59	1268.412	1	480.6	63.6%	1	F.PIAQPATDVEAR.A	1 1

Similarities: R13B_YEAST(4:0)

NOP3_YEAST

21.5%

414

45407

5.5

(Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1 protein) (Nuclear polyadenylated RNA-binding protein 1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.03758.03758.2	4.2366	0.3967	2491.55	2492.849	1	1759.0	52.4%	2	R.PFPLDVQESELNEIFGPFGPMK.E	2
*	bob1-06.03032.03032.2	4.7767	0.5425	1972.31	1973.19	1	1683.5	67.6%	6	K.ILNGFAFVEFEEAESAAK.A	2
*	bob1-02.01508.01508.2	4.1706	0.4726	1482.21	1482.676	1	1030.9	83.3%	1	K.SFANQPLEVVYSK.L	2
*	bob1-02.01332.01332.2	4.4032	0.4656	1585.17	1585.668	1	1837.6	80.8%	1	R.ENSLETTFSSVNTR.D	2
*	bob1-06.03994.03994.2	5.2621	0.5006	2437.39	2438.65	1	970.7	57.1%	9	R.DFDGTGALEFPSEEILVEALER.L	2
*	bob1-06.03995.03995.3	3.9852	0.4378	2438.51	2438.65	1	1225.1	31.0%	2	R.DFDGTGALEFPSEEILVEALER.L	3

R172_YEAST

21.3%

183

20420

10.9

(P46990) 60S ribosomal protein L17-B (YL17-B)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01148.01148.2	3.3965	0.3844	1287.17	1287.418	1	1188.8	83.3%	1	K.YLDQVLDHQR.A	2
	bob1-02.01523.01523.2	5.2915	0.4014	1646.19	1645.856	1	2642.7	80.0%	3	K.FVQGLLQNAAANAEAK.G	2 2
	bob1-04.01048.01048.2	4.2055	0.3733	1498.61	1497.737	1	1688.7	79.2%	1	K.LYVSHIQVNQAPK.Q	2 2

Similarities: R171_YEAST(2:1)

R171_YEAST

21.3%

183

20418

10.9

(P05740) 60S ribosomal protein L17-A (YL17-A)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01170.01170.2	3.5247	0.3875	1301.05	1301.445	1	1289.8	83.3%	1	K.YLEQVLDHQR.A	2
	bob1-02.01523.01523.2	5.2915	0.4014	1646.19	1645.856	1	2642.7	80.0%	3	K.FVQGLLQNAAANAEAK.G	2 2
	bob1-04.01048.01048.2	4.2055	0.3733	1498.61	1497.737	1	1688.7	79.2%	1	K.LYVSHIQVNQAPK.Q	2 2

Similarities: R172_YEAST(2:1)

RL43_YEAST

20.9%

9960

10.4

(P49631) 60S ribosomal protein L43 (L37A) (YL35)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01072.01072.2	5.435	0.5747	1795.65	1796.034	1	3703.6	83.3%	2	K.KTVAGGAYTVSTAAAATVR.S	2
*	bob1-05.01138.01138.2	4.7603	0.4943	1667.47	1667.86	1	1989.8	67.6%	2	K.TVAGGAYTVSTAAAATVR.S	2

RL3_YEAST

20.7%

386

43626

10.3

(P14126) 60S ribosomal protein L3 (YL1) (RP1) (Trichodermin resistance protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02032.02032.2	3.3473	0.3443	1411.55	1411.684	1	867.4	79.2%	1	R.SKPVALTSFLGYK.A	2
*	bob1-05.01742.01742.2	4.2973	0.4797	1715.29	1715.901	1	1286.8	71.4%	3	R.SLTTVWAEHLSDEVK.R	2
*	bob1-04.01167.01167.2	5.0317	0.4506	1667.27	1667.86	1	2248.4	73.3%	2	K.AHLAEIQLNGGSISEK.V	2
*	bob1-06.02814.02814.2	5.2553	0.5127	2281.73	2281.583	1	1416.5	60.0%	6	K.TVAVDSVFEQNEMIDAIAVTK.G	2
*	bob1-06.01883.01883.2	3.2958	0.4061	1650.23	1650.933	1	469.0	53.6%	1	K.TITPMGGFVHYGEIK.N	2

HS79_YEAST

20.5%

692

77490

5.6

(P32590) Heat shock protein homolog SSE2

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01542.01542.2	4.1891	0.4906	1513.21	1513.694	1	1791.5	75.0%	2	F.GLDLGNNNSVLAVAR.N	2 2
*	bob1-03.01335.01335.2	3.1497	0.3245	1117.61	1118.278	1	553.9	85.0%	1	R.STPSLVGFGPR.N	2
	bob1-02.01050.01050.1	2.2256	0.2438	893.46	893.975	1	505.3	78.6%	1	R.YNIADAAR.I	1 1
*	bob1-03.01835.01835.2	5.2833	0.1842	1655.41	1654.904	2	1889.9	76.7%	1	R.IVNDVTAAAVSYGVFK.N	2
*	bob1-07.02991.02991.2	3.8167	0.4852	1863.61	1864.106	1	1131.1	56.2%	3	K.LTVNDIDFVEIIGGTTR.I	2
	bob1-06.01782.01782.2	3.9127	0.3216	1514.39	1514.734	1	1370.3	69.2%	1	K.GAAFICAIHSPTLR.V	2 2
*	bob1-02.02088.02088.2	3.5195	0.3503	1865.25	1865.99	1	1068.0	71.4%	1	K.FEDIDPYSVSYTWDK.Q	2
*	bob1-03.02226.02226.2	3.7391	0.2281	1384.65	1385.56	1	1700.3	80.0%	1	K.NALEEYIYTLR.A	2
*	bob1-03.02147.02147.2	5.0286	0.5211	2131.97	2132.263	1	1027.5	58.3%	1	K.NMLATTENWLYGDGDDSTK.A	2
	bob1-07.02284.02284.2	3.8753	0.4699	1853.73	1854.156	1	1142.4	60.0%	1	K.YIAKYEELASLGNIIR.G	2 2
	bob1-02.02082.02082.2	4.3771	0.4208	1378.05	1378.568	1	1505.7	81.8%	4	K.YEELASLGNIIR.G	2 2

Similarities: HS78_YEAST(5:6)

IF2P_YEAST

20.4%

1002

112268

5.8

(P39730) Eukaryotic translation initiation factor 5B (eIF-5B) (Translation initiation factor IF-2)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02323.02323.2	5.5594	0.4769	2115.77	2115.273	1	1796.7	60.0%	5	R.EASASAEGAEAIEGDFMSTLK.Q	2
*	bob1-02.00968.00968.2	2.7331	0.4582	1854.01	1855.012	1	437.3	47.4%	1	K.STPAATPAATPTPSSASPNK.K	2
*	bob1-03.00915.00915.2	3.1633	0.4141	1981.71	1983.186	1	527.3	47.5%	1	K.STPAATPAATPTPSSASPNKK.D	2
*	bob1-05.01174.01174.2	2.8284	0.1374	1086.73	1087.351	1	641.6	72.2%	1	R.KAPFVVALNK.I	2
*	bob1-03.01320.01320.1	1.8104	0.1395	958.54	959.177	3	592.9	62.5%	1	K.APFVVALNK.I	1
*	bob1-05.02223.02223.2	5.9557	0.4532	2237.57	2238.502	1	2809.7	72.2%	2	K.IQLELAEQGLNSELYFQNK.N	2
*	bob1-04.01248.01248.2	3.5426	0.4278	1339.13	1339.575	1	1221.5	81.8%	1	Y.LSHVEATILEVK.V	2
*	bob1-07.03462.03462.2	4.8362	0.4592	2054.61	2054.351	1	1837.6	61.1%	2	K.VVEGFGTTIDVILSNGYLR.E	2
*	bob1-03.01232.01232.2	2.8998	0.2796	1008.97	1009.237	1	726.0	81.2%	1	R.ALLTPQPLR.E	2
*	bob1-03.01992.01992.2	3.6618	0.4602	1373.93	1374.725	1	1951.9	83.3%	1	K.IPVMSIGLGPVYK.R	2
*	bob1-02.00996.00996.2	3.2446	0.3731	1395.35	1395.466	1	835.6	72.7%	1	K.EAEQYAEQEGIK.I	2
*	bob1-04.02799.02799.2	4.9153	0.4582	1570.47	1570.888	1	1366.2	71.4%	3	R.GPMIIGVDVLEGTLR.V	2
*	bob1-04.01198.01198.2	4.1599	0.369	1734.19	1734.006	1	952.7	57.1%	2	K.VISLEINHQPVQEVK.K	2
*	bob1-03.00831.00831.2	2.6441	0.3972	1058.31	1058.226	1	921.2	80.0%	1	K.KGQTAAGVAVR.L	2
*	bob1-02.01266.01266.2	3.8176	0.4651	1482.93	1483.624	1	1098.9	70.8%	1	R.LEDPSGQQPIWGR.H	2
*	bob1-04.01427.01427.2	5.0066	0.5008	1649.25	1648.77	1	1621.9	84.6%	2	R.HVDENDTLYSLVSR.R	2

RS4_YEAST

20.4%

260

29279

10.1

(P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02984.02984.2	5.3377	0.4849	2593.53	2593.824	1	1195.4	52.3%	5	R.TDTTYPAGFMDVITLDATNENFR.L	2
*	bob1-03.02986.02986.3	4.6845	0.4551	2593.55	2593.824	1	1010.1	34.1%	1	R.TDTTYPAGFMDVITLDATNENFR.L	3
*	bob1-03.01034.01034.2	2.7143	0.3964	1200.05	1200.34	1	647.9	85.0%	1	K.GVPYVVTHDGR.T	2
*	bob1-02.01748.01748.2	3.4815	0.3735	1578.31	1578.808	1	774.4	65.4%	1	R.LNNVFVIGEQGKPY.I	2
*	bob1-07.02219.02219.3	4.0611	0.2682	2117.15	2117.496	1	821.3	40.3%	1	R.LNNVFVIGEQGKPYISLPK.G	3
*	bob1-06.02360.02360.2	5.3226	0.3959	2118.11	2117.496	1	934.5	55.6%	5	R.LNNVFVIGEQGKPYISLPK.G	2

G3P3_YEAST

19.9%

331

35615

7.0

(P00359) Glyceraldehyde-3-phosphate dehydrogenase 3 (EC 1.2.1.12) (GAPDH 3)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.02736.02736.2	2.8501	0.2918	2405.11	2404.638	1	501.0	40.9%	1	R.DPANLPWGSSNVDIAIDSTGVFK.E	2
	bob1-02.01055.01055.2	2.5426	0.2074	1375.49	1375.522	1	500.9	60.7%	1	R.TASGNIIPSSTGAAK.A	2 2 2
	bob1-03.01879.01879.2	3.7919	0.3466	1471.11	1471.734	1	1268.1	73.1%	1	R.VPTVDVSVVDLTVK.L	2 2 2
	bob1-03.01448.01448.2	3.4912	0.3897	1753.45	1753.865	1	978.9	61.5%	1	K.LVSWYDNEYGYSTR.V	2 2

Similarities: G3P2_YEAST(3:1)
G3P1_YEAST(2:2)

HS73_YEAST

19.7%

649

70547

5.2

(P09435) Heat shock protein SSA3

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01286.01286.2	2.851	0.2032	1487.59	1488.594	1	654.6	70.8%	1	R.TTPSYVAFTDTER.L	2 2
*	bob1-03.02338.02338.2	3.2053	0.3087	1569.01	1569.81	1	1211.3	73.1%	1	K.TFTPEEISSMVLSK.M	2
	bob1-02.01602.01602.2	4.2871	0.5125	1895.13	1896.067	1	460.7	56.2%	4	T.VNDAVVTVPAYFNDSQR.Q	2 2 2
	bob1-02.01506.01506.1	2.2569	0.2771	1097.43	1098.16	2	280.7	68.8%	2	V.PAYFNDSQR.Q	1 1 1 1 1
	bob1-02.01806.01806.2	4.8926	0.4655	1660.77	1660.908	1	1636.8	83.3%	3	R.IINEPTAAAIAYGLDK.K	2 2 2 2
	bob1-04.01486.01486.2	5.1759	0.4332	1789.35	1789.082	1	1144.6	71.9%	5	R.IINEPTAAAIAYGLDKK.G	2 2 2 2
	bob1-04.01459.01459.2	4.3006	0.5121	1562.17	1562.763	1	1090.4	78.6%	1	I.NEPTAAAIAYGLDKK.G	2 2 2 2
	bob1-04.01487.01487.2	3.4446	0.4021	1319.09	1319.544	1	1243.9	70.8%	1	E.PTAAAIAYGLDKK.G	2 2 2 2
*2	bob1-02.01422.01422.1	2.1822	0.1128	1242.59	1243.486	61	269.2	45.0%	1	R.STLEPVEKVLK.D	1 1 1
*2	bob1-02.01418.01418.2	3.0769	0.2697	1242.81	1243.486	2	545.9	80.0%	1	R.STLEPVEKVLK.D	2 2 2
	bob1-03.01306.01306.2	3.5262	0.5045	1524.21	1523.688	1	1213.7	70.8%	1	K.LVSDFFNGKEPNR.S	2 2
	bob1-07.04008.04008.2	3.5737	0.3916	2570.33	2571.045	1	444.9	37.5%	1	K.TQDLLLLDVAPLSLGIETAGGIMTK.L	2 2
	bob1-06.02566.02566.2	3.8432	0.4486	1938.95	1939.222	1	1007.9	55.9%	4	K.DNNLLGKFELSGIPPAPR.G	2 2 2 2
	bob1-03.01394.01394.2	3.342	0.4899	1184.05	1184.381	1	1206.4	90.0%	3	K.FELSGIPPAPR.G	2 2 2 2

Similarities: HS71_YEAST(8:6)
HS76_YEAST(2:12)
HS75_YEAST(2:12)
HS72_YEAST(8:6)
HS77_YEAST(1:13)
HS74_YEAST(10:4)

RL10_YEAST

19.5%

221

25361

10.0

(P41805) 60S ribosomal protein L10 (L9) (Ubiquinol-cytochrome C reductase complex subunit VI requiring protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.02538.02538.2	3.3839	0.3749	1247.39	1247.48	1	1310.4	80.0%	2	R.VDIGQIIFSVR.T	2
*	bob1-06.02034.02034.2	3.5712	0.3099	1639.39	1639.851	1	619.8	66.7%	1	K.WGFTNLDRPEYLK.K	2
*	bob1-06.02312.02312.2	3.6331	0.4457	2186.51	2185.401	1	299.1	36.1%	1	K.KGSLENNIREFPEYFAAQA.-	2

IMD1_YEAST

19.4%

403

44386

8.2

(P39567) Probable inosine-5'-monophosphate dehydrogenase IMD1 (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-06.02071.02071.2	4.1738	0.3418	2708.17	2707.056	1	1023.6	41.7%	1	R.VKNYENGFINNPIVISPTTTVGEAK.S	2 2 2
bob1-02.02146.02146.2	5.2567	0.5352	2478.95	2479.749	1	1056.3	52.3%	7	K.NYENGFINNPIVISPTTTVGEAK.S	2 2 2
bob1-04.02702.02702.2	5.7511	0.545	2094.49	2095.372	1	2141.4	73.5%	17	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
bob1-02.01690.01690.2	6.121	0.6116	1941.23	1942.177	1	1820.6	66.7%	4	K.NPVTGAQGITLSEGNEILK.K	2 2 2
bob1-04.01338.01338.2	5.7855	0.515	2069.73	2070.351	1	1943.3	65.8%	4	K.NPVTGAQGITLSEGNEILKK.I	2 2 2
bob1-04.01339.01339.3	3.8369	0.4015	2070.53	2070.351	1	520.7	35.5%	2	K.NPVTGAQGITLSEGNEILKK.I	3 3 3
bob1-04.01348.01348.2	3.7904	0.4716	1760.13	1759.998	1	845.9	59.4%	1	V.TGAQGITLSEGNEILKK.I	2 2 2
bob1-02.01468.01468.2	4.2827	0.5119	1473.23	1470.626	1	1173.5	75.0%	2	K.EQAANLIAAGADGLR.I	2 2 2 2

Similarities: IMD3_YEAST(8:0)
IMD4_YEAST(1:7)
IMD2_YEAST(8:0)

RM13_YEAST

19.3%

275

31526

9.3

(Q02204) 60S ribosomal protein L13, mitochondrial precursor (YmL13)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02142.02142.2	3.1076	0.2387	1577.17	1576.795	1	430.5	57.7%	1	K.LAVSSAPFNQWLSR.D	2
*	bob1-04.01991.01991.2	5.3057	0.4415	2178.09	2179.404	1	2078.8	66.7%	1	R.DKITSDNQLDDMILQATEK.T	2
*	bob1-03.03020.03020.2	4.8058	0.4948	2286.37	2287.615	1	1768.4	73.7%	1	K.SGYLIPDYELTTLSTPLQFK.R	2

NHPX_YEAST

19.0%

126

13569

7.9

(P39990) NHP2/L7aE family protein YEL026W

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.04234.04234.3	6.1256	0.4142	2567.66	2567.948	1	3087.6	44.6%	2	K.AFPLADAALTQQILDVVQQAANLR.Q	3
*	bob1-07.04236.04236.2	6.2351	0.4502	2568.05	2567.948	1	2380.0	56.5%	1	K.AFPLADAALTQQILDVVQQAANLR.Q	2

SIK1_YEAST

18.8%

504

56864

8.9

(Q12460) SIK1 protein (Nucleolar protein NOP56)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.03026.03026.2	4.5641	0.5017	2087.59	2088.408	1	1579.3	67.6%	3	M.APIEYLLFEEPTGYAVFK.V	2
*	bob1-05.01430.01430.2	4.973	0.3745	1868.21	1868.097	1	1805.7	73.3%	1	R.LKEVQEQINDFGAFTK.L	2
*	bob1-03.02263.02263.2	4.4519	0.503	2218.19	2218.379	1	1089.3	45.2%	2	K.GAAEALENANDISEGLVSESLK.A	2
*	bob1-04.01036.01036.2	3.1917	0.3907	1341.49	1341.55	1	933.6	66.7%	1	R.LISHAGSLTNLSK.Q	2
*	bob1-06.01710.01710.2	3.4739	0.3557	1385.43	1385.605	1	930.3	77.3%	1	K.YGLIYHSGFISK.A	2
*	bob1-04.01976.01976.2	3.8386	0.4059	1666.21	1666.887	1	1804.6	73.1%	1	K.NELAIQEAMELYNK.D	2

R10A_YEAST

18.0%

217

24486

9.7

(P53030) 60S ribosomal protein L1 (L10a)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.02730.02730.2	5.2152	0.3744	1490.07	1490.74	1	2108.3	83.3%	5	R.NFLETVELQVGLK.N	2
*	bob1-05.01942.01942.2	3.5434	0.3202	1368.19	1368.616	1	1227.2	81.8%	3	K.YNAFIASEVLIK.Q	2
*	bob1-03.01140.01140.2	4.2307	0.4687	1591.33	1590.733	1	1136.3	69.2%	1	K.FPTPVSHNDDLYGK.V	2

RS30_YEAST

17.7%

6987

11.7

(Q12087) 40S ribosomal protein S30

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01146.01146.2	3.9192	0.255	1247.17	1247.483	1	1483.9	90.0%	2	R.RFVNVTLVNGK.R	2
*	bob1-02.01272.01272.1	2.6968	0.2045	1090.41	1091.296	8	482.5	72.2%	1	R.FVNVTLVNGK.R	1

YG22_YEAST

17.6%

642

71305

8.9

(P53235) Hypothetical 71.3 kDa protein in SCM4-MUP1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01962.01962.2	5.667	0.3993	2565.21	2565.709	1	726.9	47.6%	1	K.TSQDIELFQSYPTFEQSNTNSK.D	2
*	bob1-06.02971.02971.2	4.4177	0.3407	1426.35	1426.699	1	1454.5	70.8%	2	K.PAQLIIWALSEGK.I	2
*	bob1-06.01963.01963.2	4.3856	0.5353	1988.07	1989.195	1	967.8	50.0%	1	R.VSLTTGPVHDFTWSPTSR.Q	2
*	bob1-06.03939.03939.2	3.7117	0.4483	2133.19	2134.501	1	551.5	47.2%	2	R.QFGVIAGYMPATISFFDLR.G	2
*	bob1-04.01754.01754.2	3.3449	0.4287	1737.97	1738.956	1	379.1	53.3%	1	K.WSPGGEFIMTATTSPR.L	2
*	bob1-06.01262.01262.2	2.8949	0.4221	1125.17	1125.275	1	473.5	70.0%	1	K.AGGAYKPPHAR.R	2
*	bob1-05.01159.01159.2	2.7036	0.178	1415.59	1413.719	1	424.7	57.7%	1	K.KTIPGLVPGMSANK.D	2

MET8_YEAST

17.5%

274

31918

6.3

(P15807) Siroheme biosynthesis protein MET8 [Includes: Precorrin-2 dehydrogenase (EC 1.3.1.76); Sirohydrochlorin ferrochelatase (EC 4.99.1.4)]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02428.02428.2	2.6528	0.3224	2312.39	2313.574	2	247.8	38.2%	1	R.FINPNWDPTKNEIYEYIR.S	2
*	bob1-04.01664.01664.2	2.7937	0.1705	1412.75	1412.673	1	1100.0	62.5%	1	R.LQILISTNGLSPR.F	2
*	bob1-03.03130.03130.2	4.9222	0.4684	1865.37	1865.152	1	1205.5	65.6%	3	R.NLFTQMGDLALEDAVVK.L	2

IF2A_YEAST

17.4%

304

34718

5.0

(P20459) Eukaryotic translation initiation factor 2 alpha subunit (eIF-2-alpha)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.03163.03163.2	4.5974	0.4102	2108.75	2109.443	1	2137.8	70.6%	3	K.LLEYDNIEGMILLSELSR.R	2
*	bob1-03.02870.02870.2	5.0841	0.5974	1716.41	1717.059	1	1547.1	80.0%	5	K.LVAAPLYVLTTQALDK.Q	2
*	bob1-07.02563.02563.2	3.4691	0.3823	1972.35	1973.364	1	858.8	52.9%	2	K.LVAAPLYVLTTQALDKQK.G	2
*	bob1-03.02015.02015.2	5.8171	0.4781	1790.45	1789.977	1	2545.9	71.9%	1	K.AVTATEDAELQALLESK.E	2

EF1A_YEAST

17.2%

458

50033

9.0

(P02994) Elongation factor 1-alpha (EF-1-alpha)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02306.02306.3	3.8619	0.3047	2363.87	2364.704	1	990.6	33.8%	2	K.TLLEAIDAIEQPSRPTDKPLR.L	3
*	bob1-03.01139.01139.2	3.4814	0.3202	1025.89	1026.224	1	1174.2	90.0%	1	K.IGGIGTVPVGR.V	2
*	bob1-06.02236.02236.2	4.9325	0.4082	2430.87	2431.893	1	473.7	45.7%	2	R.VETGVIKPGMVVTFAPAGVTTEVK.S	2
*	bob1-04.01206.01206.2	4.1071	0.4213	2551.13	2551.793	1	656.7	47.7%	1	K.SVEMHHEQLEQGVPGDNVGFNVK.N	2
*	bob1-04.01194.01194.3	3.6857	0.1254	2552.42	2551.793	1	561.5	35.2%	1	K.SVEMHHEQLEQGVPGDNVGFNVK.N	3

CARP_YEAST

17.0%

405

44499

4.8

(P07267) Saccharopepsin precursor (EC 3.4.23.25) (Aspartate protease) (Proteinase A) (Proteinase YSCA)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02055.02055.2	4.0365	0.5001	1916.39	1917.082	1	714.5	55.9%	2	K.QDFAEATSEPGLTFAFGK.F	2
*	bob1-03.02511.02511.2	4.7621	0.5298	1712.95	1713.925	1	1805.3	83.3%	2	K.FDGILGLGYDTISVDK.V	2
*	bob1-06.02807.02807.2	2.6528	0.2703	2145.43	2146.451	6	137.1	44.1%	1	K.VVPPFYNAIQQDLLDEKR.F	2
*	bob1-06.02832.02832.2	4.1525	0.4299	1947.23	1948.186	1	1293.7	63.3%	1	V.PPFYNAIQQDLLDEKR.F	2
*	bob1-06.02070.02070.2	2.7244	0.3473	1888.63	1890.146	5	281.1	43.8%	1	R.KYYSIYDLGNNAVGLAK.A	2
*	bob1-03.02027.02027.2	3.6491	0.4555	1761.19	1761.972	1	1267.3	66.7%	1	K.YYSIYDLGNNAVGLAK.A	2

RLA0_YEAST

17.0%

312

33766

4.8

(P05317) 60S acidic ribosomal protein P0 (L10E)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01884.01884.2	5.4252	0.4754	2132.19	2132.399	1	2028.6	69.4%	3	K.SLFVVGVDNVSSQQMHEVR.K	2
*	bob1-02.01540.01540.2	3.4888	0.4154	1284.87	1284.458	1	708.7	77.3%	1	R.AGAVAPEDIWVR.A	2
*	bob1-06.02292.02292.2	3.6862	0.2819	2281.27	2281.632	1	622.6	47.6%	1	R.AVNTGMEPGKTSFFQALGVPTK.I	2
*	bob1-03.02047.02047.2	3.9757	0.4292	1296.25	1296.509	1	798.3	72.7%	2	K.TSFFQALGVPTK.I	2

IF5_YEAST

16.8%

405

45261

5.1

(P38431) Eukaryotic translation initiation factor 5 (eIF-5)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01362.01362.2	3.2769	0.2795	1203.37	1203.338	1	980.3	70.8%	1	R.GGGLSISDIAQGK.S	2
*	bob1-06.02960.02960.3	3.6342	0.234	2895.23	2895.121	1	841.9	26.0%	1	K.AAASTLEDIEVKDDEWAVDMSEEAIR.A	3
*	bob1-02.02600.02600.1	1.9995	0.0885	1285.76	1288.573	8	244.2	50.0%	1	G.LEHKDLIPLLP.K	1
*	bob1-05.02431.02431.2	2.9925	0.2188	2193.07	2193.52	1	652.1	44.1%	1	K.ILVQLYNNDIISEEEIMR.F	2

RL6B_YEAST

16.6%

175

19855

10.1

(P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-06.03584.03584.2	3.7939	0.471	1479.77	1480.834	1	563.4	67.9%	8	R.ASLVPGTVLILLAGR.F	2 2
	bob1-07.03403.03403.1	2.0776	0.3082	1109.54	1110.385	106	244.0	40.0%	2	V.PGTVLILLAGR.F	1 1
*	bob1-05.01520.01520.2	4.0749	0.1589	1584.57	1584.812	1	902.0	76.9%	1	K.HLEDNTLLVTGPFK.V	2

Similarities: RL6A_YEAST(2:1)

PRS6_YEAST

16.1%

428

47970

5.5

(P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein) (TAT-binding homolog 2)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01950.01950.2	2.8566	0.2729	2187.57	2186.38	2	500.1	40.6%	2	K.EYELLTLQEDYIKDEQR.H	2
*	bob1-03.03047.03047.2	3.2031	0.4414	1962.25	1963.192	1	694.0	52.9%	2	R.ENAPSIIFIDEVDSIATK.R	2
*	bob1-03.02656.02656.2	2.6151	0.2362	1643.93	1644.924	2	415.3	50.0%	1	K.MSLAPEADLDSLIIR.N	2
*	bob1-04.03348.03348.2	2.8047	0.2435	1916.69	1917.188	1	661.6	41.7%	1	R.NDSLSGAVIAAIMQEAGLR.A	2

DBP3_YEAST

15.9%

523

58827

9.1

(P20447) Probable ATP-dependent RNA helicase DBP3 (Helicase CA3)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02974.02974.2	4.1306	0.3316	1835.63	1836.092	1	809.4	60.0%	2	R.ELASQIYDNLIVLTDK.V	2
*	bob1-07.03856.03856.2	3.4292	0.4163	2818.55	2819.138	1	552.9	39.6%	1	R.LLDLLQEGSVDLSQVNYLVLDEADR.M	2
*	bob1-03.01031.01031.2	4.1426	0.4217	1517.15	1517.682	1	1368.4	69.2%	1	K.VSIGNTDQLTANKR.I	2
*	bob1-02.01455.01455.2	2.5728	0.139	1243.93	1244.434	1	580.1	77.3%	1	K.SNLLLATDVAAR.G	2
*	bob1-03.01056.01056.2	4.2091	0.4744	1719.09	1719.849	1	643.5	73.3%	1	R.AGQTGTAHTLFTEQEK.H	2

RFA1_YEAST

15.8%

621

70348

6.2

(P22336) Replication factor-A protein 1 (RF-A) (Single-stranded DNA-binding protein) (DNA binding protein BUF2) (Replication protein A 69 kDa DNA-binding subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01284.01284.2	2.5239	0.2335	1166.45	1166.279	1	665.2	66.7%	1	R.GDFHSIFTNK.Q	2
*	bob1-06.02088.02088.2	4.3262	0.3771	1534.87	1535.86	1	1907.0	87.5%	1	K.NLIMISDGIYHMK.A	2
*	bob1-02.01376.01376.2	2.5023	0.092	1081.81	1081.344	2	773.6	72.2%	1	R.VIIAEPAIVR.E	2
*	bob1-06.02934.02934.2	3.8465	0.3297	1698.37	1696.941	1	1810.9	80.8%	1	K.YVLLVDDFELVQSR.A	2
*	bob1-03.02390.02390.2	4.6441	0.4554	1624.93	1625.822	1	2262.8	84.6%	1	K.LFNVNFLDTSGEIR.A	2
*	bob1-02.01424.01424.2	3.3394	0.4999	1645.37	1645.827	1	981.0	70.8%	1	K.ITQSIQMNEYDFR.I	2
*	bob1-04.01156.01156.2	3.0995	0.4172	1452.29	1451.625	1	797.8	63.6%	1	R.YTVANLHSLNYR.A	2
*	bob1-02.01383.01383.2	4.0536	0.3834	1324.83	1325.415	1	1302.7	77.3%	1	R.AEADYLADELSK.A	2

Q04947

15.6%

295

32916

9.0

(Q04947) Hypothetical protein (YDR233C) (Rtn1p)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01180.01180.2	3.3994	0.39	1269.47	1269.437	1	615.9	77.3%	1	K.LAADVPLEPESK.A	2
*	bob1-06.02175.02175.3	4.5367	0.3444	3835.49	3836.176	1	554.6	24.2%	1	K.AYTSSAQVMPEVPQHEPSTTQEFNVDELSNELKK.S	3

MDJ1_YEAST

15.5%

511

55561

9.2

(P35191) MDJ1 protein, mitochondrial precursor

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01539.01539.2	4.548	0.5011	1835.67	1836.055	1	976.6	71.9%	1	K.TITVDLPHGLQDGDVVR.I	2
*	bob1-02.02395.02395.2	3.021	0.0945	2463.41	2464.692	28	267.4	31.8%	2	G.QGSYPDIAVEADLKDSVKLSRGD.I	2
*	bob1-03.01828.01828.2	3.0466	0.2388	2115.43	2114.467	6	325.2	42.1%	1	K.VAPGTQYNQVISIPNMGVPK.T	2
*	bob1-03.01303.01303.2	3.365	0.2399	1974.41	1974.28	1	574.1	47.2%	1	K.TMQPGTAAGTAINEEILKK.Q	2

U	BMH1_YEAST	2	2	14.7%	266	29960	4.9	(P29311) BMH1 protein
U	BMH2_YEAST	2	2	14.3%	272	30930	4.9	(P34730) BMH2 protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-05.01512.01512.2	2.9091	0.179	1969.23	1971.207	2	393.6	43.3%	1	K.LAEQAERYEEMVENMK.T	2
	bob1-07.03026.03026.2	4.0182	0.4839	2398.81	2399.657	1	670.1	45.5%	1	K.ISDDILSVLDSHLIPSATTGESK.V	2

MAS5_YEAST

14.4%

409

44671

6.3

(P25491) Mitochondrial protein import protein MAS5 (Protein YDJ1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02587.02587.2	3.5848	0.3843	2008.55	2009.35	1	392.2	52.9%	3	K.FYDILGVPVTATDVEIKK.A	2
*	bob1-03.01262.01262.2	3.8259	0.4063	1680.31	1679.824	1	973.6	64.3%	1	K.EASAAYEILSDPEKR.D	2
*	bob1-04.01306.01306.2	4.3951	0.4512	1419.17	1419.574	1	1420.7	90.9%	3	K.HEISASLEELYK.G	2
*	bob1-03.01575.01575.2	3.5851	0.4449	1395.13	1395.703	1	516.0	61.5%	1	K.VGIVPGEVIAPGMR.K	2

SGN1_YEAST

14.4%

250

28954

9.3

(P40561) RNA-binding protein SGN1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02594.02594.2	3.7965	0.308	2388.37	2387.651	1	634.4	47.5%	2	R.SIFVGNITPDVTPEQIEDHFK.D	2
*	bob1-03.00968.00968.2	2.7465	0.2665	1617.19	1617.858	1	439.7	57.1%	1	R.STSQKPVVMPSDNVK.S	2

U	R24A_YEAST	3	7	14.2%	155	17614	11.3	(P04449) 60S ribosomal protein L24-A (L30A) (RP29) (YL21)
U	R24B_YEAST	3	7	14.2%	155	17547	11.4	(P24000) 60S ribosomal protein L24-B (L30B) (RP29) (YL21)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-05.02287.02287.2	3.2729	0.2688	1005.67	1006.236	1	1023.1	92.9%	4	R.IAWTVLFR.K	2
bob1-04.01275.01275.2	3.5864	0.2212	1483.43	1483.751	3	758.6	61.5%	2	K.AQRPITGASLDLIK.E	2
bob1-04.01282.01282.3	4.281	0.3321	1483.61	1483.751	1	1804.7	53.8%	1	K.AQRPITGASLDLIK.E	3

RT13_YEAST

13.9%

339

38988

9.4

(P12686) 40S ribosomal protein S13, mitochondrial precursor (YmS-A)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02031.02031.2	3.2484	0.2727	1556.29	1556.848	1	1009.0	66.7%	1	R.AIWTYISPIHVQK.M	2
*	bob1-03.02780.02780.2	4.9186	0.4456	1527.21	1527.764	1	2656.6	78.6%	1	K.NNTGLANILVATLGR.Q	2
*	bob1-03.01256.01256.2	3.0001	0.3018	2096.87	2097.327	1	275.0	44.4%	1	K.ALGLLETPPPQESTEKEEK.-	2

RL5_YEAST

13.8%

297

33743

6.8

(P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S RNA-binding protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.03007.03007.2	4.5359	0.5267	2093.85	2094.285	1	1000.3	65.6%	6	R.FPGWDFETEEIDPELLR.S	2
*	bob1-07.02772.02772.2	5.1127	0.4578	2653.61	2654.803	1	1478.3	52.2%	2	K.GYLADDIDADSLEDIYTSAHEAIR.A	2

VATB_YEAST

13.7%

517

57749

5.1

(P16140) Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02243.02243.2	3.6746	0.3616	2156.29	2155.372	1	1037.1	52.8%	1	K.VFAEDYLDINGSPINPYAR.I	2
*	bob1-03.03144.03144.3	4.3384	0.3967	2400.02	2399.736	1	1083.9	33.3%	1	R.IYPEEMISTGVSAIDTMNSIAR.G	3
*	bob1-03.02103.02103.2	4.2785	0.5403	1929.25	1930.139	1	530.2	63.3%	1	R.GYPGYMYTDLSTIYER.A	2
*	bob1-03.02364.02364.2	2.5964	0.2873	1526.17	1526.819	2	389.7	53.8%	1	K.GIYPPINVLPSLSR.L	2

HEMZ_YEAST

13.5%

393

44596

9.0

(P16622) Ferrochelatase, mitochondrial precursor (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme synthetase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01534.01534.2	5.0795	0.5326	1489.57	1489.788	1	1245.6	71.4%	1	R.SPTGIVLMNMGGPSK.V	2
*	bob1-07.02083.02083.2	4.084	0.484	2360.19	2361.532	1	1163.4	57.9%	1	F.SQYPHFSYSTTGSSINELWR.Q	2
*	bob1-05.02031.02031.2	3.288	0.4011	1959.41	1960.108	1	978.2	52.9%	2	K.SNDPVKDLSLVFGNHEST.-	2

HMO1_YEAST

13.4%

246

27544

8.5

(Q03973) High mobility group protein 1 (High spontaneous mutagenesis protein 2)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02556.02556.2	4.1463	0.5433	1611.65	1611.833	1	1409.2	71.4%	1	K.SAKDSLVSSLFELSK.A	2
*	bob1-04.01544.01544.2	4.4657	0.5431	1899.35	1900.18	1	506.2	61.8%	1	K.AGLPPLSSTEITQEISKK.W	2

G3P2_YEAST

13.0%

331

35716

7.0

(P00358) Glyceraldehyde-3-phosphate dehydrogenase 2 (EC 1.2.1.12) (GAPDH 2)

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-02.01055.01055.2	2.5426	0.2074	1375.49	1375.522	1	500.9	60.7%	1	R.TASGNIIPSSTGAAK.A	2 2 2
bob1-03.01879.01879.2	3.7919	0.3466	1471.11	1471.734	1	1268.1	73.1%	1	R.VPTVDVSVVDLTVK.L	2 2 2
bob1-03.01448.01448.2	3.4912	0.3897	1753.45	1753.865	1	978.9	61.5%	1	K.LVSWYDNEYGYSTR.V	2 2

Similarities: G3P3_YEAST(3:0)
G3P1_YEAST(2:1)

YRA1_YEAST

12.8%

226

24956

11.3

(Q12159) RNA annealing protein YRA1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01218.01218.2	3.5319	0.2315	1506.37	1506.789	11	429.1	58.3%	1	R.LNLIVDPNQRPVK.S	2
*	bob1-06.02724.02724.2	3.9737	0.4815	1832.53	1834.005	1	1810.8	75.0%	1	K.SLEDLDKEMADYFEK.K	2
*	bob1-06.02691.02691.2	3.6757	0.3808	1962.59	1962.179	1	1334.4	56.7%	1	K.SLEDLDKEMADYFEKK.-	2

RL18_YEAST

12.4%

186

20563

11.7

(P07279) 60S ribosomal protein L18 (RP28)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.00935.00935.2	2.5565	0.3772	1125.21	1125.316	1	477.8	72.2%	1	K.INRPPVSVSR.I	2
*	bob1-05.01075.01075.2	3.6696	0.3117	1331.99	1332.497	1	1494.9	79.2%	1	K.TVVVVGTVTDDAR.I	2

Q07362

12.4%

185

19881

10.3

(Q07362) S.cerevisiae chromosome IV reading frame ORF YDL053c

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01070.01070.3	3.5106	0.3816	2233.04	2233.53	1	702.2	34.1%	1	K.ATLSASGPNSNGPTPAVLPQKPK.L	3
*	bob1-05.01076.01076.2	3.4465	0.3756	2233.59	2233.53	1	680.8	38.6%	1	K.ATLSASGPNSNGPTPAVLPQKPK.L	2

Q03195

12.3%

608

68340

8.7

(Q03195) Hypothetical protein (YDR091C)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.02104.02104.2	3.4869	0.3426	1517.57	1517.678	1	1420.9	90.9%	1	R.FDDPPEWQEIIK.Y	2
*	bob1-04.01168.01168.2	3.6822	0.4261	1527.51	1527.807	1	680.8	79.2%	1	K.AIIKPQYVDNIPR.A	2
*	bob1-02.01010.01010.2	4.6136	0.4882	1606.49	1606.643	1	2001.8	78.6%	1	R.IADATEDLQNDSASR.A	2
*	bob1-03.01183.01183.2	4.1052	0.3813	1665.13	1665.927	1	1129.5	70.0%	1	K.LLAGALKPDEGQDIPK.L	2
*	bob1-05.02035.02035.2	3.7475	0.431	2165.61	2166.352	1	974.4	50.0%	2	R.IDDIIDQEVQHLSGGELQR.V	2

NOP5_YEAST

12.3%

511

56956

8.9

(Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.02127.02127.2	4.038	0.3346	1960.17	1961.087	1	601.5	56.2%	1	K.ASETDLSEILPEEIEER.V	2
*	bob1-05.03236.03236.2	4.6259	0.5373	1722.07	1723.026	1	1532.4	75.0%	3	K.AIAPNLTQLVGELVGAR.L	2
*	bob1-05.01239.01239.2	2.6675	0.2592	1310.15	1310.58	1	825.4	62.5%	1	R.LIAHSGSLISLAK.S	2
*	bob1-07.01680.01680.2	3.2985	0.5245	1677.77	1678.929	1	723.9	50.0%	1	K.YGLLYHASLVGQATGK.N	2

R16B_YEAST

12.2%

197

22118

10.5

(P26785) 60S ribosomal protein L16-B (YL15) (RP23)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01882.01882.2	4.4109	0.3316	1354.23	1354.505	1	1505.8	86.4%	1	R.AEALNISGEFFR.N	2
*	bob1-04.01196.01196.2	2.8949	0.2105	1404.15	1404.649	1	484.1	72.7%	1	K.IFEGIPPPYDKK.K	2

FOX2_YEAST

12.1%

900

98703

9.0

(Q02207) Peroxisomal hydratase-dehydrogenase-epimerase (HDE) (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01131.01131.2	3.4761	0.4045	1711.17	1711.872	1	618.7	47.1%	1	K.VVVNDLGGTLGGSGHNSK.A	2
*	bob1-03.02162.02162.3	3.9243	0.4131	3468.29	3467.93	1	487.8	20.2%	1	P.YMRSQKFGRIINTASPAGLFGNFGQANYSAAK.M	3
*	bob1-03.02162.02162.2	5.4349	0.5995	2312.53	2313.575	1	1605.6	59.1%	1	R.IINTASPAGLFGNFGQANYSAAK.M	3
*	bob1-03.02347.02347.2	4.1543	0.3804	1202.99	1203.483	1	1348.8	90.9%	1	K.MGLVGLAETLAK.E	2
*	bob1-05.01431.01431.2	4.3187	0.4328	1766.23	1766.109	1	935.1	65.6%	2	R.GIIVNVIAPHAETAMTK.T	2
*	bob1-04.01755.01755.2	4.2348	0.4497	1483.93	1483.704	1	1889.2	76.9%	1	K.AALVVGGFETYDIK.T	2
*	bob1-05.01823.01823.2	2.8332	0.1904	1739.33	1738.981	9	294.5	40.0%	2	R.LSGDFNPLHIDPTLAK.A	2

YM76_YEAST

12.0%

724

82049

5.4

(Q05029) Hypothetical 82.0 kDa protein in RNA1-RNT1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02983.02983.2	4.357	0.4462	1853.99	1855.185	1	1132.3	71.9%	5	R.VGQFQDLGPPDLITLIK.S	2
*	bob1-03.03172.03172.2	3.5928	0.4235	1794.21	1795.088	1	1500.0	64.3%	1	K.ITDLFLDTPQIWFGK.K	2
*	bob1-03.01750.01750.2	3.2228	0.2833	1181.05	1181.337	1	1038.9	88.9%	1	K.ISISSWNAFR.K	2
*	bob1-02.00951.00951.1	1.9598	0.1261	1325.65	1328.465	77	121.9	45.5%	1	F.LADDSKTSHIQL.I	1
*	bob1-02.01463.01463.2	2.6393	0.4045	1515.93	1516.692	2	545.5	46.4%	1	K.SADPNLVNLSASSLK.S	2
*	bob1-06.04302.04302.2	5.2846	0.4799	2062.37	2063.358	1	1781.5	70.6%	4	R.FSDPVAQLIDDNILNFLK.N	2

C1TM_YEAST

11.9%

975

106217

8.7

(P09440) C-1-tetrahydrofolate synthase, mitochondrial precursor (C1-THF synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3.4.3)]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02744.02744.2	2.5085	0.1243	2282.13	2282.723	3	253.6	31.6%	1	C.IIEKLPAEITEVELLKKISD.I	2
*	bob1-04.01564.01564.2	3.4452	0.3008	1484.29	1483.789	1	921.5	66.7%	1	K.LPAEITEVELLKK.I	2
*	bob1-03.01276.01276.2	3.2438	0.3564	1565.19	1565.723	1	1011.0	61.5%	1	L.HLESPVPSDIDISR.A	2
*	bob1-03.01778.01778.2	3.9521	0.3838	1615.31	1615.91	2	1050.9	63.3%	1	K.YVLVAGITPTPLGEGK.S	2
*	bob1-05.02488.02488.2	2.5999	0.2473	1584.39	1583.869	2	538.6	53.3%	1	R.SSGLVPDAVVLVATVR.A	2
*	bob1-03.02111.02111.2	2.9816	0.4155	1286.17	1286.56	1	602.4	77.3%	1	K.TFGIPVVVAINR.F	2
*	bob1-04.01099.01099.3	3.5419	0.4469	2110.4	2110.312	1	807.3	35.0%	1	K.AALNAGASHAVTSNHWMEGGK.G	3
*	bob1-04.01375.01375.2	4.3209	0.5305	1380.87	1381.572	1	1392.3	80.8%	1	K.GAVELAHAVVDATK.E	2
*	bob1-06.01795.01795.3	5.1686	0.4478	1735.7	1735.978	1	1542.7	53.1%	1	K.GAVELAHAVVDATKEPK.N	3
*	bob1-06.01787.01787.2	4.434	0.5518	1735.71	1735.978	1	1428.8	59.4%	1	K.GAVELAHAVVDATKEPK.N	2

U	O74302	2	2	11.6%	440	49009	7.6	(O74302) TY1A protein
U	YMU1_YEAST	2	2	11.6%	440	49129	7.9	(Q12231) Transposon Ty1 protein A
U	YME5_YEAST	2	2	11.6%	440	49122	7.9	(Q04706) Transposon Ty1 protein A
U	YJZ8_YEAST	2	2	11.6%	440	49112	7.6	(P47099) Transposon Ty1 protein A
U	YJZ6_YEAST	2	2	11.6%	440	48993	7.9	(P47097) Transposon Ty1 protein A
U	Q12217	2	2	11.6%	440	49068	7.9	(Q12217) TY1A protein
U	Q12162	2	2	11.6%	440	48953	7.9	(Q12162) TY1A protein
U	Q12085	2	2	11.6%	440	49056	7.9	(Q12085) TY1A protein
U	Q03856	2	2	11.6%	440	49057	8.2	(Q03856) TYA protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-07.01914.01914.3	4.0673	0.2	2125.31	2125.479	1	1089.5	35.5%	1	K.FLQNSNLGGIIPTVNGKPVR.Q	3 3
	bob1-05.02371.02371.3	3.8348	0.3912	3376.82	3374.614	1	703.0	25.8%	1	K.MQSDTQEANDIVTLANLQYNGSTPADAFETK.V	3 3

Similarities: O13535(2:0)

U	H2B1_YEAST	1	11	11.5%	130	14121	10.1	(P02293) Histone H2B.1
U	H2B2_YEAST	1	11	11.5%	130	14106	10.1	(P02294) Histone H2B.2

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-06.03946.03946.2	4.804	0.4716	1771.95	1773.014	1	1889.9	75.0%	11	K.SMSILNSFVNDIFER.I	2

DR48_YEAST

11.2%

429

46102

4.5

(P18899) DDR48 stress protein (DNA damage-responsive protein 48) (DDRP 48) (YP 75) (Flocculent specific protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.00918.00918.2	4.6934	0.189	2535.25	2535.38	1	774.9	45.7%	2	K.SSYGSNNDDSYGSNNDDSYGSSNK.K	2
*	bob1-02.00924.00924.2	4.1155	0.3957	2506.15	2507.37	1	737.4	43.5%	1	K.SSYGSSNNDSYGSNNDDSYGSSNK.K	2

YGG8_YEAST

10.8%

194

20650

9.2

(P53163) 60S ribosomal protein L7/L12 homolog, mitochondrial precursor

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.04003.04003.2	5.1004	0.5622	2357.69	2358.735	1	1842.1	62.5%	4	K.IVQDISQLTLLETSSLINELK.T	2
*	bob1-05.03295.03295.3	4.4546	0.2624	2358.71	2358.735	1	1466.9	35.0%	2	K.IVQDISQLTLLETSSLINELK.T	3

RPC5_YEAST

10.4%

335

37687

5.5

(P07703) DNA-directed RNA polymerases I and III 40 kDa polypeptide (EC 2.7.7.6) (AC40) (C37)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.03123.03123.2	2.8654	0.3826	2024.41	2025.225	1	504.7	44.1%	1	R.EANFDLINIDTSIANAFR.R	2
*	bob1-07.02182.02182.2	3.4216	0.3308	1890.47	1891.264	1	510.5	56.2%	2	R.LLPQINILQPIKGESAR.R	2

IF39_YEAST

10.1%

763

88130

6.0

(P06103) Eukaryotic translation initiation factor 3 90 kDa subunit (eIF3 p90) (Cell cycle regulation and translation initiation protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01724.01724.2	3.2952	0.2712	1550.93	1550.767	1	746.6	61.5%	1	K.VVNMEFPIDEATGK.T	2
*	bob1-06.03015.03015.2	4.8389	0.3987	2277.47	2278.455	1	1484.6	58.3%	3	K.TSVFWNSMFNEEDSLVESR.E	2
*	bob1-02.02132.02132.2	4.097	0.2929	2083.17	2083.256	1	843.5	52.9%	1	F.STEPIIVEEDNEFSPFTK.K	2
*	bob1-03.01187.01187.2	4.1781	0.5089	1386.21	1386.606	1	2502.1	91.7%	1	R.MVGDSLIVHDATK.N	2
*	bob1-03.01864.01864.2	2.9986	0.327	1358.99	1359.673	1	951.4	66.7%	1	R.FVVVGALVGPNMR.R	2

HS7E_YEAST

9.2%

644

70085

6.3

(P39987) Heat shock protein SSC3, mitochondrial precursor

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01719.01719.1	2.6825	0.2987	1081.44	1082.161	1	402.7	75.0%	3	V.PAYFNDAQR.Q	1 1 1 1
*	bob1-05.01434.01434.2	5.2376	0.4755	1789.33	1789.042	1	1434.9	71.9%	1	L.RVVNEPTAAALAYGLDK.S	2
	bob1-03.02059.02059.2	4.6027	0.4898	1508.79	1509.832	1	672.0	64.3%	7	K.LIGNFTLAGIPPAPK.G	2 2
*2	bob1-03.01503.01503.2	5.3733	0.5617	2011.89	2010.122	1	1737.4	67.6%	2	K.ADQLANDTENSIKEFEGK.L	2 2

Similarities: HS76_YEAST(1:3)
HS75_YEAST(1:3)
HS77_YEAST(2:2)
GR78_YEAST(1:3)

YII8_YEAST

9.2%

490

53737

5.3

(P40501) Hypothetical 53.7 kDa protein in SGA1-KTR7 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02202.02202.2	2.5465	0.087	2688.45	2690.984	8	283.3	27.1%	1	I.VGLSGYLTFGNETLGNLMLNYDPNS.I	2
*	bob1-06.02060.02060.2	4.0578	0.0898	2231.13	2230.615	70	510.1	34.2%	1	P.LRIAVNNVIIWIEITYGGAN.P	2

RPA3_YEAST

9.2%

415

46651

9.5

(Q01080) DNA-directed RNA polymerase I 49 kDa polypeptide (EC 2.7.7.6) (A49)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02539.02539.2	5.1449	0.4836	2482.99	2483.734	1	963.6	50.0%	2	R.SVSEIEIESVQDQPSVAVGSFFK.G	2
*	bob1-03.02650.02650.2	4.273	0.5705	1623.37	1623.89	1	1261.1	82.1%	2	R.LNSPPEILVDGILSR.F	2

YAE2_YEAST

9.2%

415

46235

6.8

(P39727) Hypothetical 46.3 kDa protein in PTA1-CDC24 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.03119.03119.3	3.5379	0.2243	3306.44	3307.74	100	209.4	19.4%	1	L.VNEWGQFNSVVTRPQLVVDRDRHAKLEL.N	2 3
*	bob1-02.02722.02722.2	2.6703	0.0973	1142.95	1143.335	1	1427.1	83.3%	1	C.RIKGSAQINR.I	2

MED6_YEAST

9.2%

295

32819

5.3

(P38782) RNA polymerase II mediator complex protein MED6 (RNA polymerase II transcriptional regulation mediator 6)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02627.02627.2	3.3186	0.2685	1331.77	1332.545	1	1387.1	80.0%	1	K.SPEWIQVFGLR.T	2
*	bob1-03.03159.03159.2	4.3428	0.4579	1922.25	1923.086	1	1097.8	53.3%	1	R.TENVLDYFAESPFFDK.T	2

CBF5_YEAST

9.1%

483

54705

8.9

(P33322) Centromere/microtubule binding protein CBF5 (Centromere-binding factor 5) (Nucleolar protein CBF5) (P64')

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.01358.01358.2	3.4232	0.3721	1668.47	1668.893	1	695.9	56.7%	2	R.SGHYTPIPAGSSPLKR.D	2
*	bob1-04.01363.01363.2	3.5477	0.4306	1741.99	1742.926	1	630.3	53.8%	2	R.TIYESNLIEFDNKR.N	2
*	bob1-03.03099.03099.2	2.6766	0.3266	1574.23	1574.901	1	349.6	57.7%	1	R.SIIQPLETLLVGYK.R	2

INO1_YEAST

8.8%

536

60070

6.6

(P11986) Inositol-3-phosphate synthase (EC 5.5.1.4) (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.00944.00944.2	3.2554	0.1274	1490.91	1492.545	4	835.6	58.3%	1	P.DFIAANQDERANQ.C	2
*	bob1-07.02967.02967.3	3.6769	0.095	3517.88	3519.119	169	202.5	18.9%	1	T.FIAGDDLKSGQTKLKSVLAQFLVDAGIKPVSIAS.Y	3

G3P1_YEAST

8.8%

331

35619

8.3

(P00360) Glyceraldehyde-3-phosphate dehydrogenase 1 (EC 1.2.1.12) (GAPDH 1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-02.01055.01055.2	2.5426	0.2074	1375.49	1375.522	1	500.9	60.7%	1	R.TASGNIIPSSTGAAK.A	2 2 2
	bob1-03.01879.01879.2	3.7919	0.3466	1471.11	1471.734	1	1268.1	73.1%	1	R.VPTVDVSVVDLTVK.L	2 2 2

Similarities: G3P3_YEAST(2:0)
G3P2_YEAST(2:0)

TUP1_YEAST

8.3%

713

78308

5.7

(P16649) Glucose repression regulatory protein TUP1 (Flocculation suppressor protein) (Repressor AER2)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01219.01219.2	3.4943	0.3566	1375.13	1375.524	1	1076.3	80.0%	1	R.NTVYELELTHR.K	2
*	bob1-03.01431.01431.2	2.9507	0.2883	2085.27	2086.222	3	187.2	35.3%	1	K.EEDATPASLHQDHYLVPY.N	2
*	bob1-02.01372.01372.2	4.3882	0.4604	1997.31	1998.111	1	747.3	50.0%	1	K.DVENLNTSSSPSSDLYIR.S	2
*	bob1-05.01380.01380.2	3.2751	0.3915	1322.49	1323.556	1	1148.6	72.7%	2	K.SGNPLLMLQGHR.N	2

ENO2_YEAST

8.3%

436

46783

6.0

(P00925) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-04.01324.01324.2	4.2225	0.5911	1840.99	1842.077	1	482.0	55.9%	2	R.SIVPSGASTGVHEALEMR.D	2
*	bob1-03.01847.01847.2	2.9453	0.315	1855.47	1856.086	1	929.2	52.9%	1	K.TAGIQIVADDLTVTNPAR.I	2

IF3A_YEAST

8.2%

964

110344

6.3

(P38249) Eukaryotic translation initiation factor 3 110 kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02352.02352.2	2.8133	0.2091	1219.59	1219.441	2	575.3	66.7%	1	R.SIEDVFHLMK.I	2
*	bob1-02.02124.02124.2	3.5401	0.4447	1298.73	1299.423	1	1188.9	72.7%	1	K.DPFDIFASTASK.E	2
*	bob1-04.00562.00562.2	4.6367	0.4836	1847.01	1844.999	1	2030.1	73.3%	1	K.HMEHAALHAEQDAEVR.Q	2
*	bob1-03.00948.00948.2	3.7911	0.278	1551.51	1552.728	1	835.6	64.3%	1	R.AGNREPPSTPSTLPK.A	2
*	bob1-03.00998.00998.2	4.1986	0.4499	2307.69	2308.507	1	670.0	44.0%	1	R.TAGGSSPATPATPATPATPTPSSGPK.K	2
*	bob1-03.00999.00999.3	4.2261	0.3621	2308.22	2308.507	2	600.5	28.0%	1	R.TAGGSSPATPATPATPATPTPSSGPK.K	3

SSN6_YEAST

7.7%

966

107202

5.0

(P14922) Glucose repression mediator protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02278.02278.2	2.5678	0.1091	2297.79	2299.51	399	102.3	25.0%	2	A.AYDAFQQAVNRDSRNPIFW.C	2
*	bob1-03.01790.01790.3	6.1573	0.5262	3379.25	3378.726	1	1098.9	29.7%	1	K.SNGAPTNASPAPPPVILQPTLQPNDQGNPLNTR.I	3
*	bob1-02.00907.00907.2	2.5965	0.2178	2234.69	2235.237	1	318.3	42.9%	1	K.EENGTTEASAPSTEEAEPAASR.D	2

PAT1_YEAST

7.7%

796

88495

7.7

(P25644) Topoisomerase II-associated protein PAT1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.03091.03091.2	3.2955	0.4153	2790.55	2791.042	1	320.8	35.7%	1	R.YQLSQIVTEDPYNEDFYFQVYK.I	2
*	bob1-04.01962.01962.3	4.2485	0.2982	3768.05	3766.963	1	609.8	19.1%	2	R.QQPSDPDALKDVTDSLTNVDLASSGSSSTGSSAAAVASK.Q	3

RNQ1_YEAST

7.7%

405

42580

6.6

(P25367) [PIN+] prion protein RNQ1 (Rich in asparagine and glutamine protein 1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01888.01888.2	2.7934	0.2988	1647.97	1645.843	1	668.1	46.9%	1	R.AAGGGSSFMNTLMADSK.G	2
*	bob1-07.01835.01835.2	3.853	0.4587	1486.05	1486.77	1	783.1	57.7%	2	K.LALLATVMTHSSNK.G	2

LONM_YEAST

7.6%

1133

127112

5.6

(P36775) Lon protease homolog, mitochondrial precursor (EC 3.4.21.-)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02175.02175.2	2.5325	0.3565	1669.53	1670.918	1	689.3	53.6%	1	K.LSTLETSMSEFGVIR.N	2
*	bob1-07.03680.03680.2	3.632	0.3218	1593.09	1593.822	1	1388.6	79.2%	1	R.NYLDWLTSIPWGK.H	2
*	bob1-06.02456.02456.2	3.2519	0.4366	2233.25	2234.501	1	818.9	42.5%	1	K.SAGLENSHVDMTEDAITALMK.Y	2
*	bob1-03.03307.03307.2	4.8385	0.47	1980.31	1981.271	1	1793.9	60.5%	3	K.DGPSAGVTMATSFLSLALNK.S	2
*	bob1-03.03178.03178.2	3.9918	0.4379	2009.51	2010.21	1	1616.0	71.9%	1	K.EGLEPLAADWYNDIFQK.L	2

YG5B_YEAST

7.6%

781

89513

5.4

(P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01492.01492.2	3.6767	0.3163	1607.81	1606.834	1	1144.1	75.0%	1	R.ITDQIMDTIQHYK.G	2
*	bob1-07.01947.01947.2	2.6074	0.4132	1658.63	1658.941	1	456.5	50.0%	1	K.HALTYPGNIFVGGIAK.S	2
*	bob1-06.01780.01780.2	2.653	0.1753	1751.91	1750.952	1	551.5	46.4%	1	R.TVNGSTLFINYHVER.K	2
*	bob1-03.02124.02124.2	2.6858	0.2491	1590.21	1588.757	1	485.8	46.4%	1	R.GYGFVSFESPLDAAK.A	2

GBP2_YEAST

7.5%

427

48729

6.3

(P25555) Single-strand telomeric DNA-binding protein GBP2 (G-strand binding protein 2) (RAP1 localization factor 6)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01190.01190.2	4.7282	0.4949	1993.91	1995.153	1	891.9	50.0%	1	R.GTEPGLAQDAAVHIDETAAK.F	2
*	bob1-03.03012.03012.2	3.9336	0.4088	1309.25	1309.505	1	2175.7	86.4%	1	R.SDLFDLFGPIGK.I	2

KEM1_YEAST

7.4%

1528

175459

7.5

(P22147) Strand exchange protein 1 (KAR(-) enhancing mutation protein) (5'-3' exoribonuclease) (DNA strand transfer protein beta) (STP-beta) (P175)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02330.02330.2	3.4756	0.3399	1221.07	1221.485	1	1042.8	80.0%	1	K.GAFPVLLQTFK.E	2
*	bob1-02.02442.02442.2	3.3322	0.3297	1907.23	1907.168	1	442.6	53.1%	1	K.LSPDLPDEEIPTLELPK.D	2
*	bob1-02.01710.01710.2	4.1734	0.4577	2182.07	2183.265	1	562.4	50.0%	1	K.MDLDSINPDETEEEFQNR.V	2
*	bob1-03.02788.02788.2	3.3374	0.186	2484.79	2483.579	2	261.6	32.5%	1	K.MDLDSINPDETEEEFQNRVNS.I	2
*	bob1-02.02312.02312.2	3.446	0.3982	1829.29	1830.047	1	767.9	60.7%	1	K.DLIYSFNPQVDNLYK.S	2
*	bob1-06.03892.03892.2	3.7008	0.4513	1871.35	1872.276	1	541.4	50.0%	2	K.IGPMEAIATVFPVTGLVR.D	2
*	bob1-03.02602.02602.2	3.2266	0.2691	1551.85	1551.783	1	998.1	62.5%	2	R.GWEYSNLTLNLLK.E	2
*	bob1-03.02991.02991.2	3.8619	0.4574	1960.55	1961.176	1	462.0	47.1%	1	K.VGNDIPVLEDLFPDTSTK.D	2

PRSA_YEAST

7.4%

434

48256

5.1

(P33297) 26S protease regulatory subunit 6A (TAT-binding protein homolog 1) (TBP-1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.02868.02868.2	3.2139	0.2471	1871.69	1872.039	1	718.0	56.7%	1	K.DSYLILDTLPSEFDSR.V	2
*	bob1-03.02284.02284.2	3.4107	0.4704	1691.23	1690.011	1	566.2	56.7%	1	K.LAAPQLVQMYIGEGAK.L	2

PRS4_YEAST

7.3%

437

48828

6.0

(P40327) 26S protease regulatory subunit 4 homolog (TAT-binding homolog 5)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02932.02932.2	3.8841	0.4011	2137.59	2137.53	1	940.9	52.6%	1	K.TMSIVGVLQDDADPMVSVMK.M	2
*	bob1-03.01776.01776.2	3.0376	0.304	1420.69	1421.59	1	754.2	77.3%	1	K.NKVEENLEGLYL.-	2

GCR1_YEAST

7.2%

844

94318

8.5

(P07261) Glycolytic genes transcriptional activator GCR1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02754.02754.3	3.8422	0.1288	3514.76	3517.014	101	200.8	15.8%	1	K.VNVDSLNSLKLVDLIVDQTYPDSLTLRKLNE.G	3
*	bob1-06.03696.03696.3	3.9946	0.2829	3069.89	3069.355	1	750.6	24.1%	2	A.DKPVPISNIHNSTEAANSSGTVTKTAPSFP.Q	3

PR19_YEAST

7.2%

503

56570

5.2

(P32523) Pre-mRNA splicing factor PRP19

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02808.02808.2	3.0824	0.3244	1802.49	1802.164	1	265.6	43.3%	1	R.LLLLYPGNQITILDSK.T	2
*	bob1-04.01484.01484.2	4.5633	0.5499	2245.71	2246.395	1	707.2	42.1%	1	R.GTIGFQSYEDDSQYIVHSAK.S	2

ACT_YEAST

7.2%

375

41690

5.7

(P60010) Actin

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01634.01634.2	2.9662	0.3868	1200.15	1199.442	1	669.2	70.0%	1	R.AVFPSIVGRPR.H	2
*	bob1-02.01876.01876.2	4.7203	0.5045	1792.43	1791.955	1	1044.3	60.0%	1	K.SYELPDGQVITIGNER.F	2

SYDC_YEAST

7.0%

556

63384

6.6

(P04802) Aspartyl-tRNA synthetase, cytoplasmic (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.03040.03040.2	3.7379	0.4606	2231.27	2232.536	1	847.6	55.3%	1	K.IYTISETPEALPILLEDASR.S	2
*	bob1-04.02272.02272.2	3.4762	0.4431	1989.29	1989.232	1	517.5	44.4%	1	K.LLGAPSEGGSSVFEVTYFK.G	2

YCG9_YEAST

7.0%

458

50225

9.1

(P25594) Hypothetical transport protein YCL069W

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-01.02104.02104.1	2.0403	0.0987	1344.41	1345.414	4	503.6	54.5%	1	T.FGGNKYSWNSGQ.V	1
*	bob1-05.02720.02720.2	3.3045	0.0886	2367.57	2369.686	1	852.3	42.1%	1	L.FCSFSSNKKLIIPKKDETPE.D	2

K6P2_YEAST

6.6%

959

104618

6.7

(P16862) 6-phosphofructokinase beta subunit (EC 2.7.1.11) (Phosphofructokinase 2) (Phosphohexokinase) (6PF-1-K beta subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02103.02103.2	3.0473	0.2916	1933.11	1932.184	2	508.1	44.1%	1	R.SHATQSLVFNTSDILAVK.D	2
*	bob1-03.02034.02034.2	3.9322	0.335	1473.47	1470.726	1	966.7	79.2%	4	R.AFVVMEGYEGLVR.G	2
*	bob1-05.03251.03251.3	4.1311	0.3107	3318.92	3319.777	1	653.6	23.4%	1	R.ILATLQGLEAVNAVLESTPDTPSPLIAVNENK.I	3

STU2_YEAST

6.4%

888

100918

8.6

(P46675) Suppressor of tubulin STU2

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.03828.03828.2	3.1185	0.3175	1882.07	1882.077	1	1604.6	56.7%	1	R.VEALEEFWDSVLSQTK.K	2
*	bob1-04.01284.01284.2	4.7746	0.4725	2107.37	2106.297	1	880.5	55.3%	2	K.TLPNFSIASGSTHSTIETNK.Q	2
*	bob1-04.01114.01114.2	5.0904	0.5496	2043.37	2043.346	1	1236.9	55.0%	1	K.VNPIGSVASASKPSMVAANNK.S	2

U	YCX7_YEAST	2	22	6.4%	171	19825	10.1	(P25652) Very hypothetical 19.8 kDa protein in ABP1 5'region
U	YJZ3_YEAST	2	38	8.3%	133	15282	10.7	(P47094) Hypothetical 15.3 kDa protein in MER2-BNA1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
3	bob1-03.01736.01736.2	3.4541	0.1671	1150.35	1150.618	3	1285.1	88.9%	12	V.LLLLLLLLLL.L	2 2
2	bob1-05.01787.01787.2	3.3439	0.0991	1263.41	1263.777	4	1284.9	80.0%	10	V.LLLLLLLLLLL.L	2 2

Similarities: YHY1_YEAST(2:0)

DCP1_YEAST

6.2%

562

61364

6.2

(P06169) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (EC 4.1.1.-)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01136.01136.2	3.6199	0.4155	1598.49	1597.852	1	714.4	57.1%	1	R.YGGVYVGTLSKPEVK.E	2
*	bob1-03.03240.03240.2	3.9043	0.3171	2287.61	2287.738	1	477.8	47.4%	1	R.MIEIMLPVFDAPQNLVEQAK.L	2

U	TBA1_YEAST	2	2	6.0%	447	49800	5.1	(P09733) Tubulin alpha-1 chain
U	TBA3_YEAST	2	2	6.1%	445	49694	5.2	(P09734) Tubulin alpha-3 chain

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	bob1-04.01680.01680.2	3.9069	0.4614	1850.11	1850.938	1	875.5	53.1%	1	K.GGEEGFSTFFHETGYGK.F	2
	bob1-01.03514.03514.1	2.036	0.1165	1143.12	1143.236	2	527.4	61.1%	1	Y.VDLEPNVIDE.V	1

RPA1_YEAST

5.9%

1664

186431

7.1

(P10964) DNA-directed RNA polymerase I 190 kDa polypeptide (EC 2.7.7.6) (A190)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.04196.04196.2	5.5481	0.4556	2242.03	2242.552	1	1705.8	60.5%	2	R.LMNAFVTIQNDVNAFIDSTK.A	2
*	bob1-03.02528.02528.2	4.2654	0.4789	2424.03	2423.769	1	723.1	50.0%	1	R.SVISPDPNIETNEIGVPPVFAVK.L	2
*	bob1-06.01895.01895.2	3.167	0.3151	2076.17	2076.372	1	416.9	52.8%	1	K.TLPSFKPYETDAMAGGYVK.G	2
*	bob1-07.02443.02443.2	4.0587	0.3788	1899.55	1900.139	1	1581.8	68.8%	1	K.YNPSALIEHLDVESALK.Y	2
*	bob1-02.00982.00982.2	5.6512	0.5212	1820.35	1820.954	1	2757.1	75.0%	1	K.VIVTETTGTSNTAGGNAAR.S	2

K6P1_YEAST

5.9%

987

107970

6.4

(P16861) 6-phosphofructokinase alpha subunit (EC 2.7.1.11) (Phosphofructokinase 1) (Phosphohexokinase) (6PF-1-K alpha subunit)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.03082.03082.2	4.1014	0.495	2168.13	2169.523	1	449.5	47.4%	1	K.AVLEFTPETPSPLIGILENK.I	2
*	bob1-03.02532.02532.2	3.4661	0.4525	1793.19	1792.983	1	1021.6	56.7%	1	R.SVASEDLGTIAYYFQK.N	2
*	bob1-03.03191.03191.2	5.5108	0.5664	2354.87	2355.561	1	1456.2	59.5%	1	R.NEQASSVYSTQLLADIISEASK.G	2

DBP2_YEAST

5.9%

546

60999

8.8

(P24783) P68-like protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01003.01003.2	3.9917	0.4093	1460.95	1461.525	1	1690.0	90.9%	1	K.YLETASQDNEYK.T	2
*	bob1-07.02350.02350.2	4.0685	0.2597	2383.37	2383.64	1	617.8	47.4%	1	K.GINYVINYDMPGNIEDYVHR.I	2

YKZ6_YEAST

5.7%

540

61082

6.6

(P36112) Hypothetical 61.1 kDa protein in YPT52-DBP7 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02635.02635.2	3.3053	0.142	1303.31	1303.368	2	1394.8	81.8%	3	I.NSLNDSNLSIPE.S	2
*	bob1-03.01564.01564.2	2.9245	0.0907	2352.85	2351.572	43	294.9	33.3%	1	L.QEVDEFKENLTKQKDKELE.E	2

TCPZ_YEAST

5.7%

546

59924

5.9

(P39079) T-complex protein 1, zeta subunit (TCP-1-zeta) (CCT-zeta)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02519.02519.2	2.9497	0.2996	1983.91	1984.405	1	630.9	44.1%	1	K.VLLTEMQIQSPTAVLIAR.A	2
*	bob1-02.02640.02640.2	2.6267	0.1979	1521.35	1521.648	1	762.1	58.3%	1	I.DLKNEVCGMDPDK.G	2

Q03088

5.6%

825

92144

8.7

(Q03088) P7102.17P

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01495.01495.2	2.7879	0.1819	1601.55	1600.818	5	496.9	53.8%	1	R.KPSFPQLQQSANVR.S	2
*	bob1-06.02454.02454.3	3.5084	0.1088	3430.94	3430.639	151	228.8	17.7%	1	R.QFSSSTMIEVTNNNNKVNNSSSNPDISTNSVV.H	3

NUG1_YEAST

5.6%

520

57709

8.9

(P40010) Nuclear GTP-binding protein NUG1 (Nuclear GTPase 1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.03878.03878.2	2.9331	0.3248	1750.51	1750.002	1	909.1	53.3%	1	K.SVIDASDVILYVLDAR.D	2
*	bob1-03.03067.03067.2	3.9608	0.4751	1485.67	1486.618	1	1290.2	79.2%	1	K.EFDLDGLFSSLDK.A	2

CHS5_YEAST

5.5%

671

73639

4.6

(Q12114) Chitin biosynthesis protein CHS5 (CAL3 protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01762.01762.1	2.4036	0.0919	1032.63	1033.274	3	382.6	75.0%	1	R.SMVIPNPFK.V	1
*	bob1-02.02120.02120.2	2.6709	0.3483	1697.73	1697.926	2	512.4	46.4%	1	K.ISGLSVDTPYEFQLK.L	2
*	bob1-02.00959.00959.2	4.5012	0.3203	1378.13	1378.392	1	1806.3	83.3%	1	K.GSEAEDDINNVSK.E	2

ETR1_YEAST

5.4%

371

40898

8.8

(P38071) Enoyl-[acyl-carrier protein] reductase [NADPH, B-specific] (EC 1.3.1.10) (Mitochondrial respiratory function protein 1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01516.01516.2	4.3354	0.1782	2215.55	2214.48	7	666.3	42.1%	25	Y.RVFSSSSDLIKVNDLDLFSA.A	2

RPN1_YEAST

4.9%

992

109361

4.6

(P38764) 26S proteasome regulatory subunit RPN1 (Proteasome non-ATPase subunit 1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02316.02316.2	2.8513	0.3306	2026.25	2024.197	1	689.7	46.9%	1	R.LLSDVSDFEGWGHEYIR.H	2
*	bob1-03.02308.02308.2	2.7416	0.4004	1804.17	1804.231	1	892.6	50.0%	1	R.MVPLAMGIVSVSDPQMK.V	2
*	bob1-03.00931.00931.2	3.8607	0.3555	1497.43	1497.695	1	1200.2	67.9%	1	R.VGQAVETVGQAGRPK.K	2

YGJ9_YEAST

4.8%

640

72728

8.8

(P53145) Hypothetical GTP-binding protein in SEH1-PRP20 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.03306.03306.2	3.297	0.4008	1647.81	1648.937	1	1311.2	65.4%	2	K.ILSIDQLEELFLSK.A	2
*	bob1-06.02767.02767.2	3.5673	0.5027	1988.11	1988.164	1	792.2	50.0%	1	K.QAALYNAAEDLDRDFFK.M	2

YHY1_YEAST

4.8%

228

26284

8.4

(P38869) Hypothetical 26.3 kDa protein in OYE2-GND1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*3	bob1-03.01736.01736.2	3.4541	0.1671	1150.35	1150.618	3	1285.1	88.9%	2	G.IILILILLLL.L	2 2
*2	bob1-05.01787.01787.2	3.3439	0.0991	1263.41	1263.777	4	1284.9	80.0%	2	G.IILILILLLLL.D	2 2
*3	bob1-03.01736.01736.2	3.4541	0.1671	1150.35	1150.618	3	1285.1	88.9%	2	I.ILILILLLLL.D	2 2

Similarities: YCX7_YEAST(3:0)

IKI3_YEAST

4.7%

1349

152990

5.1

(Q06706) IKI3 protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02851.02851.2	4.1213	0.438	1844.57	1845.06	1	812.5	50.0%	1	F.INDSIVGVLLDTDNLSR.I	2
*	bob1-02.01016.01016.2	2.6529	0.1376	1329.17	1330.527	2	685.4	58.3%	1	I.PSKSSVVLQATRG.N	2
*	bob1-03.02684.02684.2	3.2837	0.4979	1973.55	1974.355	1	768.4	59.4%	1	K.SFGMEPAPLTEMQIYMK.K	2
*	bob1-03.03004.03004.2	2.5268	0.1145	2008.09	2005.235	1	537.7	53.3%	1	R.EYLPFLQELQDNEPLR.R	2

YKF4_YEAST

4.6%

738

83973

5.0

(P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.01199.01199.3	3.7308	0.3162	2668.19	2667.851	1	656.6	33.3%	1	K.EQQHSYVPQQHLPNPEDDITYK.S	3
*	bob1-05.01252.01252.2	2.7547	0.1956	1302.55	1301.59	1	1037.4	72.7%	1	K.MSWAAIATPKPK.A	2

SEC1_YEAST

4.6%

724

83480

7.3

(P30619) Protein transport protein SEC1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.03874.03874.2	3.0253	0.2755	1885.19	1885.216	1	341.8	56.7%	1	R.FLPGLTNPIFQFFQSK.R	2
*	bob1-05.03190.03190.2	3.955	0.4618	2011.27	2009.396	1	1264.3	59.4%	3	K.VIANPLLLSEQYFPYLK.D	2

AFG2_YEAST

4.5%

780

84748

5.7

(P32794) AFG2 protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02978.02978.2	2.8529	0.3902	1647.81	1649.017	1	665.5	46.9%	1	R.VVATLLTLMDGMGAAGK.V	2
*	bob1-04.01139.01139.2	2.5427	0.1057	1892.61	1893.197	15	149.5	41.2%	1	K.VVVIAATNRPNSVDPALR.R	2

ATU1_YEAST

4.4%

1216

131839

7.5

(P38360) Probable copper-transporting ATPase (EC 3.6.3.4) (Cu(2+)-ATPase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.02079.02079.3	3.9775	0.2209	3406.22	3403.746	8	545.0	23.3%	1	S.GEGASKKTKYSYRNSSGCLTKKKTHGDKER.L	3
*	bob1-05.02424.02424.2	2.5318	0.215	2577.03	2579.021	25	218.0	23.9%	1	E.LARHRAVKSISVRSLQASSAILVD.K	2

SWE1_YEAST

4.4%

819

92468

6.3

(P32944) Mitosis inhibitor protein kinase SWE1 (EC 2.7.1.-)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.03614.03614.2	2.8534	0.0811	2283.51	2281.481	15	324.9	28.9%	1	L.SVSPLNFVEDNNLQEDLLFS.D	2
*	bob1-03.01180.01180.2	3.0817	0.1084	1700.73	1700.889	1	853.0	53.3%	1	R.NAGAIIQEDDFGPKPK.F	2

RPA2_YEAST

4.3%

1203

135742

7.7

(P22138) DNA-directed RNA polymerase I 135 kDa polypeptide (EC 2.7.7.6) (A135) (RNA polymerase I subunit 2)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01456.01456.2	4.3561	0.4035	2496.51	2497.721	1	707.8	45.5%	1	K.VIFDGKPLNSEDEISNSGYLGNK.L	2
*	bob1-02.01208.01208.2	2.9662	0.3043	1459.25	1459.701	1	826.0	73.1%	1	R.STGPVNSLTMQPVK.G	2
*	bob1-05.01588.01588.2	3.6152	0.5065	1643.47	1643.84	1	981.2	64.3%	1	R.DALIGHGTSFLLQDR.L	2

Q02725

4.3%

835

96553

7.4

(Q02725) Ypl019cp

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.02147.02147.2	2.897	0.0825	2449.35	2451.782	2	495.0	39.5%	1	E.LEKLSRDFDNIQNFIVEEKL.Q	2
*	bob1-03.01891.01891.2	3.3875	0.1437	2580.27	2579.913	12	201.5	35.0%	1	E.LEKLSRDFDNIQNFIVEEKLQ.P	2
*	bob1-02.03382.03382.2	2.6342	0.15	1836.89	1836.009	32	390.4	42.9%	1	K.NPQEAYEEEKKTLQK.Q	2

CC48_YEAST

4.1%

835

91996

4.9

(P25694) Cell division control protein 48

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-04.03234.03234.2	4.1037	0.4994	1827.61	1828.116	1	896.0	56.2%	3	K.NAPAIIFIDEIDSIAPK.R	2
*	bob1-03.03212.03212.2	3.9299	0.477	1760.43	1761.025	1	1391.2	68.8%	1	R.AAAPTVVFLDELDSIAK.A	2

PEX8_YEAST

4.1%

589

68165

7.6

(P53248) Peroxisomal biogenesis factor 8 (Peroxin-8) (Peroxisomal protein PAS6)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.02304.02304.2	2.6749	0.1274	1421.19	1421.55	6	473.3	59.1%	1	Q.YDQRLLDEIAAN.V	2
*	bob1-02.01855.01855.2	2.6866	0.0999	1258.13	1258.374	120	620.2	60.0%	1	Y.DQRLLDEIAAN.V	2
*	bob1-04.01103.01103.2	3.3267	0.1509	1476.61	1474.762	7	689.2	59.1%	1	T.VLELMKRNNTKQ.D	2

YHS9_YEAST

3.9%

893

102250

6.4

(Q99222) YOR129C protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-05.01748.01748.2	3.0843	0.0896	2045.37	2045.22	73	258.5	40.6%	1	M.LRRELNNSISNRSIENE.S	2
*	bob1-02.02603.02603.2	2.7674	0.0943	2091.01	2092.616	35	402.0	41.2%	1	T.PLKTFFAFKNIIVLVLDL.Y	2

SPR3_YEAST

3.9%

512

59845

7.4

(P41901) Sporulation-regulated protein 3

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02562.02562.3	4.2527	0.2748	2298.65	2301.555	11	464.8	30.3%	2	T.TFINSLFSTSLIDDDIKENK.P	3
*	bob1-06.02600.02600.2	3.2526	0.1234	2300.35	2301.555	1	392.5	42.1%	1	T.TFINSLFSTSLIDDDIKENK.P	2

IF41_YEAST

3.7%

952

107101

6.0

(P39935) Eukaryotic initiation factor 4F subunit p150 (eIF4F p150) (eIF-4F p150) (mRNA cap-binding protein complex subunit p150)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.03138.03138.2	4.5244	0.4859	2553.99	2554.769	1	865.0	43.2%	1	K.DATPIEDVFSFNYPEGIEGPDIK.Y	2
	bob1-04.02603.02603.2	2.914	0.3279	1478.13	1478.731	1	414.5	54.5%	2	K.YTYGPTFLLQFK.D	2

COAC_YEAST

3.6%

2233

250351

6.3

(Q00955) Acetyl-CoA carboxylase (EC 6.4.1.2) (ACC) [Includes: Biotin carboxylase (EC 6.3.4.14)]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02624.02624.2	4.7308	0.4942	2363.41	2363.591	1	1097.7	52.4%	1	R.ADVDAVWAGWGHASENPLLPEK.L	2
*	bob1-03.01514.01514.2	2.8018	0.0919	1272.29	1272.551	2	718.1	72.7%	1	K.VIFIGPPGNAMR.S	2
*	bob1-03.01530.01530.2	3.2573	0.3148	2442.79	2443.545	2	361.4	39.5%	1	K.DTWDRPVDFTPTNDETYDVR.W	2
*	bob1-03.00996.00996.2	3.4847	0.4291	1337.19	1337.519	1	616.1	72.7%	1	K.SLAPEVHQQISK.Q	2
*	bob1-03.01504.01504.2	4.0867	0.4132	1613.95	1613.722	1	1627.6	67.9%	1	R.SDHDNAIDGLSEVIK.M	2

U	O13535	3	3	3.5%	1793	202816	8.3	(O13535) Yhr214c-bp
U	YJZ9_YEAST	3	3	3.5%	1755	198592	8.3	(P47100) Transposon Ty1 protein B
U	YJZ7_YEAST	3	3	3.5%	1755	198615	8.0	(P47098) Transposon Ty1 protein B
U	Q12316	3	3	3.5%	1756	198659	8.5	(Q12316) TY1B protein
U	Q12273	3	3	3.5%	1755	198613	8.1	(Q12273) TY1B protein
U	Q12269	3	3	3.5%	1756	198621	8.2	(Q12269) TY1B protein
U	Q12193	3	3	3.5%	1756	198868	8.5	(Q12193) TY1B protein
U	Q12141	3	3	3.5%	1755	198656	8.2	(Q12141) TY1B protein
U	Q12088	3	3	3.5%	1755	198460	8.5	(Q12088) TY1B protein
U	Q07793	3	3	3.9%	1604	181660	7.5	(Q07793) TY1B protein
U	Q03619	3	3	3.5%	1755	198568	8.5	(Q03619) YER160C protein
U	Q03612	3	3	3.5%	1755	198561	8.1	(Q03612) YER138C protein

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
bob1-07.01914.01914.3	4.0673	0.2	2125.31	2125.479	1	1089.5	35.5%	1	K.FLQNSNLGGIIPTVNGKPVR.Q	3 3
bob1-05.02371.02371.3	3.8348	0.3912	3376.82	3374.614	1	703.0	25.8%	1	K.MQSDTQEANDIVTLANLQYNGSTPADAFETK.V	3 3
bob1-04.01064.01064.2	2.6308	0.327	1168.85	1168.341	1	375.8	70.0%	1	R.GIPGYALHPSR.N	2

Similarities: O74302(2:1)

NAT1_YEAST

3.5%

853

98774

8.8

(P12945) N-terminal acetyltransferase 1 (EC 2.3.1.88) (Amino-terminal, alpha-amino, acetyltransferase 1)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02314.02314.2	2.5856	0.2795	1808.33	1809.113	2	287.2	57.1%	1	K.FIPLTFLQDKEELSK.K	2
*	bob1-04.01254.01254.2	3.5735	0.2933	1677.63	1677.944	1	438.2	57.1%	1	R.GVPATFSNVKPLYQR.R	2

SKI2_YEAST

3.4%

1287

146058

6.7

(P35207) Antiviral protein SKI2

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01764.01764.2	3.1899	0.3985	1432.13	1432.681	1	819.6	66.7%	1	K.TVVAEYAIAMAHR.N	2
*	bob1-02.02546.02546.2	5.0413	0.4587	2049.17	2049.202	1	1146.0	52.8%	1	K.DVAALNEFNAETNNILDGK.T	2
*	bob1-06.03074.03074.2	2.8346	0.2702	1516.95	1517.804	2	1011.2	68.2%	1	R.FAMMNVVYEWAR.G	2

RR44_YEAST

3.4%

1001

113707

6.7

(Q08162) Exosome complex exonuclease RRP44 (EC 3.1.13.-) (Ribosomal RNA processing protein 44) (Protein DIS3)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02432.02432.2	2.7737	0.2322	1688.15	1687.974	3	497.6	43.3%	1	K.FILSDSPLELSAPIGK.H	2
*	bob1-03.02919.02919.2	2.9693	0.2051	2075.57	2074.341	1	951.0	55.9%	1	R.AFNGDQVIVELLPQSEWK.A	2

YMH2_YEAST

3.3%

1545

171075

7.1

(Q03640) Hypothetical 171.1 kDa protein in RPL6A-DAK1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02419.02419.2	3.5636	0.4018	1955.51	1956.203	1	716.6	53.1%	1	R.INEPSWNETIEVLVPSK.S	2
*	bob1-06.02262.02262.2	4.2292	0.4086	2082.99	2083.392	1	686.8	50.0%	1	K.LQGSFNPEYIKPSFDIVK.G	2
*	bob1-05.01507.01507.2	3.6037	0.3969	1662.97	1663.874	1	969.5	56.7%	1	K.ASPEANLVLGAISHQR.L	2

PAP_YEAST

3.2%

568

64552

7.9

(P29468) Poly(A) polymerase (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.02748.02748.2	3.0602	0.1745	1996.09	1995.367	4	379.4	41.2%	1	R.KELDEIAPVPDAFVPIIK.I	2
*	bob1-03.02844.02844.2	2.6172	0.2935	1866.85	1867.193	5	292.8	40.6%	1	K.ELDEIAPVPDAFVPIIK.I	2

YN48_YEAST

3.0%

591

68654

5.1

(P42846) Hypothetical 68.7 kDa protein in STB1-MCK1 intergenic region

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02694.02694.2	3.5177	0.3524	1911.75	1912.103	1	1325.9	62.5%	1	R.EIFAADDTDLNEFIGLK.K	2
*	bob1-06.02580.02580.2	2.6117	0.2454	2040.55	2040.277	1	358.6	35.3%	1	R.EIFAADDTDLNEFIGLKK.F	2

BNR1_YEAST

2.6%

1375

156851

7.9

(P40450) BNI1 related protein 1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.01038.01038.2	3.3953	0.1862	1786.45	1788.011	33	455.4	46.7%	2	K.LLDSLQSDEIARRAVT.E	2
*	bob1-06.01992.01992.2	3.0813	0.0971	2253.41	2254.581	7	507.7	39.5%	1	T.STINFNIPSMKNITNMQNVS.L	2

MNN4_YEAST

2.5%

1178

139380

6.5

(P36044) MNN4 protein

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.01754.01754.2	2.7614	0.1632	1313.81	1315.511	89	481.2	55.0%	1	A.KDPFLFGYEKA.M	2
*	bob1-04.03626.03626.2	2.6172	0.13	2433.75	2435.604	2	245.5	36.1%	1	N.EDEEKKKNEEEEKKKQEEK.N	2

RA50_YEAST

2.4%

1312

152568

6.1

(P12753) DNA repair protein RAD50 (153 kDa protein)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02850.02850.2	3.2654	0.3406	1813.65	1814.002	2	597.3	50.0%	1	K.AFISQDLTDTIDQFAK.D	2
*	bob1-03.01402.01402.2	3.2166	0.3352	1829.61	1828.974	1	737.8	50.0%	1	K.SLSTQDSLNHELENLK.T	2

Q06685

2.4%

1146

129755

8.6

(Q06685) Ylr410wp

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.03474.03474.2	2.7942	0.1056	1421.17	1421.544	4	792.5	62.5%	2	I.TELSDEEKTIAGK.V	2
*	bob1-03.01738.01738.2	3.2147	0.3556	1693.31	1693.94	1	575.5	57.1%	1	K.FTPVNITSPNLSFQK.R	2

PAK1_YEAST

2.4%

1142

126872

8.7

(P38990) Serine/threonine-protein kinase PAK1 (EC 2.7.1.37)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-07.02534.02534.3	3.5271	0.1484	3181.4	3178.786	46	333.6	23.1%	1	L.KLFEKIVNDPLKFPTFKEIQSNKVSKV.S	3
*	bob1-01.02683.02683.1	1.86	0.1434	1304.36	1306.547	6	333.9	50.0%	1	I.VNDPLKFPTFK.E	1

DPOD_YEAST

2.3%

1097

124591

8.0

(P15436) DNA polymerase delta catalytic subunit (EC 2.7.7.7) (DNA polymerase III)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.01004.01004.2	2.722	0.2467	1301.69	1303.365	25	323.0	65.0%	1	K.IDDEDTPQLEK.K	2
*	bob1-07.03960.03960.2	3.9153	0.418	1523.47	1523.856	1	1344.3	76.9%	1	R.GILPIILDELISAR.K	2

SEC8_YEAST

2.3%

1065

122224

6.8

(P32855) Exocyst complex component SEC8

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-02.03342.03342.1	2.3361	0.1146	1137.54	1139.343	14	296.1	61.1%	1	T.NNAPTLPKRK.N	1
*	bob1-02.01263.01263.2	2.5178	0.1304	1717.21	1717.92	8	423.0	50.0%	1	E.KLSNLEKEQSKEGAR.T	2

N188_YEAST

2.1%

1655

188576

5.6

(P52593) Nucleoporin NUP188 (Nuclear pore protein NUP188)

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-06.01938.01938.2	3.7421	0.0892	2229.69	2227.696	1	1337.3	52.6%	1	R.PLLRSVLVLLELVSSGDRFI.E	2
*	bob1-04.01558.01558.2	2.8148	0.1714	1771.17	1771.073	1	648.2	57.1%	1	V.FSKGVYLILSEILCQ.I	2

NOT1_YEAST

1.6%

2108

240332

6.5

(P25655) General negative regulator of transcription subunit 1

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.00596.00596.2	2.5411	0.1458	985.19	985.085	3	841.6	81.2%	1	C.QINQEGAPK.D	2
*	bob1-06.02498.02498.3	4.4097	0.0952	2916.8	2919.309	15	492.0	28.1%	1	P.HTWGVSVFFTQLINNNDINLLDLPF.V	3

PYR1_YEAST

1.5%

2214

245123

5.9

(P07259) URA1 protein [Includes: Glutamine-dependent carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2)]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	bob1-03.02652.02652.2	3.7073	0.3937	2145.39	2145.376	1	511.2	47.2%	1	R.SAFDVPEWVDPNVQNLVSK.V	2
*	bob1-07.01932.01932.2	3.316	0.4363	1606.99	1605.834	1	920.3	57.7%	1	K.GHVITTIFFEPSTR.T	2

	Proteins	Peptide IDs	Copies
Unfiltered	5758	40578	43787
Redundant	269	1636	3640
Nonredundant	234	1415	2959

/data/2/shabadu/october2005/kellogg/bob1