DTASelect v1.9 /wfs/bfd/3/scott/beth/ti4d_2 /wfs/dbase/nci/yeastorf3.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence NRL_1MCOH 9 145 25.5% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethti4d-01.1398.1398.2 2.9259 0.3118 1186.89 1187.381 4421.6 1 958.3 77.3 2 K.GPSVFPLAPSSK.S * bethti4d-01.1344.1344.1 2.2152 0.2204 1187.17 1187.381 2940.4 1 217.2 54.5 1 K.GPSVFPLAPSSK.S * bethti4d-01.1991.1991.2 3.3068 0.339 2092.73 2093.344 8881.6 1 822.7 45.0 1 N.SGALTSGVHTFPAVLQSSGLY.S * bethti4d-06.1007.1007.2 2.555 0.341 1411.88 1412.555 4062.7 1 428.0 68.2 1 Y.ICNVNHKPSNTK.V * bethti4d-02.0786.0786.2 2.5619 0.1625 1685.97 1686.779 8829.6 1 1258.5 60.7 1 R.TPEVTCVVVDVSHED.P * bethti4d-06.1259.1259.2 4.9328 0.4029 2139.81 2139.333 6177.0 1 1180.0 61.1 10 R.TPEVTCVVVDVSHEDPQVK.F * bethti4d-01.1406.1406.2 3.8064 0.441 1677.66 1677.859 9121.9 1 1363.3 69.2 16 K.FNWYVDGVQVHNAK.T * bethti4d-05.2606.2606.2 4.7444 0.4214 1808.37 1809.119 7827.1 1 1484.3 66.7 111 R.VVSVLTVLHQNWLDGK.E * bethti4d-02.1603.1603.2 3.1069 0.3493 1671.96 1672.875 8312.7 1 1528.4 75.0 2 T.PPVLDSDGSFFLYSK.L ORFP:YAL034W-A 3 12 25.3% 289 33243 5.2 U MTW1 SGDID:S0000032, Chr I from 79720-80589 * bethti4d-06.0015.0015.3 5.751 0.4618 3350.82 3347.848 8774.6 1 1407.1 30.2 7 R.STSILTEHLGYPPISLVDDIINAVNEIMYK.C * bethti4d-04.1734.1734.2 3.4234 0.368 2257.18 2257.413 10085.7 1 1398.9 55.3 2 K.LYVDSESTSSTEEVEALLQR.L * bethti4d-01.2994.2994.2 3.6806 0.2888 2514.14 2512.771 6851.9 1 595.6 38.6 3 R.TQAGDIVSIDIEEPQLDLLDDVL.- ORFP:YPL233W 3 7 23.6% 216 25416 4.8 U NSL1 SGDID:S0006154, Chr XVI from 106172-106822 * bethti4d-06.1419.1419.2 3.9439 0.1325 1659.14 1659.839 6989.9 1 1726.1 79.2 4 R.SIYHQFHDILEEK.T * bethti4d-05.3000.3000.2 4.9412 0.404 2168.0 2168.572 7830.9 1 1927.1 69.4 1 R.EVQIQLQEFLLSAMTMASK.S * bethti4d-02.1683.1683.2 4.3467 0.3851 2256.58 2254.458 5061.7 1 501.7 52.8 2 K.QDYVASLNELYQTQQDLPK.V ORFP:YHL001W 3 6 21.7% 138 15153 10.9 U RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084 ORFP:YKL006W 3 6 21.7% 138 15167 10.9 U RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358 bethti4d-02.1282.1282.2 2.5833 0.2757 1212.57 1213.46 4498.0 1 859.5 75.0 1 K.LAAIVEIIDQK.K bethti4d-01.2498.2498.3 5.3198 0.3849 2051.08 2052.468 8638.1 1 2180.7 47.2 1 R.QAINLGQVVLTPLTFALPR.G bethti4d-01.2464.2464.2 5.2644 0.4106 2053.23 2052.468 6847.3 1 871.4 52.8 4 R.QAINLGQVVLTPLTFALPR.G ORFP:YCR031C 2 2 21.2% 137 14537 10.7 U RPS14A SGDID:S0000627, Chr III from 177492-177498,177806-178212, reverse complement ORFP:YJL191W 2 2 21.0% 138 14650 10.5 U RPS14B SGDID:S0003727, Chr X from 73786-73795,74204-74610 bethti4d-06.1651.1651.2 3.7645 0.4 2014.0 2015.23 8877.7 1 1313.2 58.8 1 R.IYASFNDTFVHVTDLSGK.E bethti4d-02.0354.0354.2 3.0242 0.5344 1024.26 1025.153 6451.1 1 803.0 80.0 1 K.TPGPGGQAALR.A KERATIN22 8 16 17.7% 645 65865 8.0 U no description * bethti4d-06.1190.1190.2 3.928 0.5235 1320.57 1321.354 5419.1 1 1696.6 86.7 1 R.HGGGGGGFGGGGFGSR.S * bethti4d-01.1686.1686.2 3.5013 0.4322 1838.82 1840.005 7902.6 1 1043.3 47.6 3 K.SISISVAGGGGGFGAAGGFGGR.G * bethti4d-01.1898.1898.3 5.5095 0.5232 2833.08 2832.881 7958.4 1 2239.7 34.3 1 R.GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethti4d-01.1770.1770.3 6.0919 0.4054 2399.04 2400.445 8854.1 1 6889.9 51.7 3 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethti4d-01.1755.1755.2 4.2561 0.4122 2401.75 2400.445 9272.3 1 1598.9 43.1 4 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethti4d-01.2395.2395.2 2.6317 0.2235 1846.34 1848.149 4298.5 3 377.3 50.0 2 R.PINLEPIFQGYIDSLK.R bethti4d-02.2059.2059.2 2.6833 0.2096 1329.68 1330.521 7496.6 1 1199.1 77.3 1 R.NLDLDSIIAEVK.A * bethti4d-01.0199.0199.2 3.2667 0.224 1393.31 1392.508 3990.9 1 433.4 72.7 1 R.SKEEAEALYHSK.Y KERATIN03 6 23 16.5% 593 59519 5.2 U no description * bethti4d-01.1318.1318.2 3.0088 0.4789 1707.96 1708.784 8085.1 1 1059.6 55.6 3 K.GSLGGGFSSGGFSGGSFSR.G * bethti4d-04.2290.2290.3 5.3064 0.2743 2367.46 2368.652 8076.2 1 2164.3 45.0 8 K.NQILNLTTDNANILLQIDNAR.L * bethti4d-05.2934.2934.2 3.207 0.3841 2096.79 2097.385 6689.8 1 1236.3 64.7 2 K.ADLEMQIESLTEELAYLK.K * bethti4d-01.2666.2666.3 5.4681 0.4234 2746.97 2748.075 4924.2 1 1292.6 40.9 4 R.YCVQLSQIQAQISALEEQLQQIR.A * bethti4d-01.2651.2651.2 6.324 0.4353 2748.67 2748.075 7190.2 1 1492.1 56.8 5 R.YCVQLSQIQAQISALEEQLQQIR.A * bethti4d-02.1023.1023.2 2.6933 0.1944 2082.65 2084.21 10049.9 1 762.3 46.9 1 R.AETECQNTEYQQLLDIK.I ORFP:YGR214W 2 3 15.1% 252 28024 4.7 U RPS0A SGDID:S0003446, Chr VII from 920570-920659,921115-921783 ORFP:YLR048W 2 3 15.1% 252 27962 4.7 U RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350 bethti4d-06.1371.1371.3 4.3712 0.4259 2817.28 2818.167 8918.9 1 682.9 28.1 2 R.NVQVHQEPYVFNARPDGVHVINVGK.T bethti4d-06.1142.1142.2 2.667 0.3059 1270.23 1270.434 3740.2 1 639.6 79.2 1 K.FAAHTGATPIAGR.F ORFP:YIR010W 7 15 13.7% 576 65692 5.4 U DSN1 SGDID:S0001449, Chr IX from 375428-377158 * bethti4d-06.1111.1111.2 2.605 0.1576 1434.9 1435.542 7441.8 9 454.5 54.5 1 Y.GSFHQQQLQQPH.Y * bethti4d-06.1288.1288.3 5.3097 0.4144 2070.08 2069.387 11723.1 1 2747.2 46.1 1 R.RLSMLASQANGGSTIISPHK.D * bethti4d-01.1388.1388.2 2.8841 0.4086 1913.42 1913.199 8909.7 1 944.4 52.8 3 R.LSMLASQANGGSTIISPHK.D * bethti4d-02.0118.0118.2 2.5336 0.1309 1988.05 1989.146 4479.1 1 470.1 50.0 1 K.DIPEEDFYTVVGNASFGK.N * bethti4d-01.2039.2039.2 2.5551 0.2339 1268.03 1268.485 5313.6 1 515.4 81.2 1 R.QLFNWCLMR.S * bethti4d-06.1386.1386.3 5.7145 0.4503 2269.81 2270.507 6086.8 1 1582.5 47.4 5 R.YQSHILNSHSLALNEITNSK.V * bethti4d-06.1436.1436.2 3.7694 0.3128 2270.61 2270.507 6996.7 1 769.1 55.3 3 R.YQSHILNSHSLALNEITNSK.V ORFP:YJR123W 2 3 12.4% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651594-652271 * bethti4d-01.1842.1842.2 4.5712 0.3935 1340.41 1340.609 9518.0 1 2513.0 87.5 2 R.VNQAIALLTIGAR.E * bethti4d-01.2298.2298.2 3.4999 0.2649 1586.99 1587.811 8086.8 1 1974.4 75.0 1 K.TIAETLAEELINAAK.G ORFP:YJR112W 2 5 10.9% 201 23640 4.9 U NNF1 SGDID:S0003873, Chr X from 636723-637328 * bethti4d-02.1751.1751.2 4.4636 0.2733 1399.68 1400.612 7765.2 1 1961.6 90.9 4 K.LNELDELILEAK.E * bethti4d-06.0240.0240.2 2.5008 0.2248 1250.9 1251.403 4394.0 1 819.6 83.3 1 R.MHAIHEIDER.L KERATIN02 3 12 9.0% 622 61987 5.2 U no description * bethti4d-05.2727.2727.2 3.6797 0.3369 1838.35 1839.056 5843.4 1 883.5 63.3 5 R.HGVQELEIELQSQLSK.K * bethti4d-01.2622.2622.3 4.0063 0.3666 2738.72 2739.039 8082.8 1 1024.7 31.8 1 R.YCGQLQMIQEQISNLEAQITDVR.Q * bethti4d-02.1515.1515.2 5.2762 0.4319 2098.41 2096.308 7064.0 1 1230.8 68.8 6 R.QEIECQNQEYSLLLSIK.M ORFP:YAL005C 2 2 7.9% 642 69768 5.1 U SSA1 SGDID:S0000004, Chr I from 139501-141429, reverse complement ORFP:YLL024C 2 2 8.0% 639 69470 5.1 U SSA2 SGDID:S0003947, Chr XII from 95565-97484, reverse complement bethti4d-06.1702.1702.3 3.6533 0.1301 2707.57 2707.87 8945.1 2 958.9 30.2 1 I.EDGIFEVKATAGDTHLGGEDFDNRL.V bethti4d-02.2425.2425.2 3.4356 0.4831 2578.2 2578.792 8222.6 1 802.6 40.0 1 R.SINPDEAVAYGAAVQAAILTGDESSK.T KERATIN21 2 2 7.6% 357 39219 5.2 U no description bethti4d-01.2119.2119.2 3.1537 0.38 1894.17 1892.122 5891.1 1 750.5 64.3 1 -.QNLEPLFEQYINNLR.R bethti4d-02.2059.2059.2 2.6833 0.2096 1329.68 1330.521 7496.6 1 1199.1 77.3 1 R.NLDLDSIIAEVK.A ORFP:YOR204W 2 2 4.8% 604 65553 7.8 U DED1 SGDID:S0005730, Chr XV from 722910-724724 * bethti4d-01.2228.2228.2 2.5019 0.2484 1532.12 1529.776 6341.6 2 341.7 46.2 1 K.TGGFLFPVLSESFK.T * bethti4d-01.1643.1643.2 3.5911 0.3472 1371.91 1372.608 9429.8 1 1901.7 75.0 1 R.SGAATLLVATAVAAR.G ORFP:YKR061W 1 19 4.2% 425 50651 5.8 U KTR2 SGDID:S0001769, Chr XI from 557313-558590 * bethti4d-05.1118.1118.2 3.9645 0.1338 2210.5 2210.423 8611.5 1 1245.7 58.8 19 D.SNHPDNIDLNVISCLRRW.W ORFP:YNL085W 2 2 3.3% 830 94494 5.6 U MKT1 SGDID:S0005029, Chr XIV from 467128-469620 * bethti4d-01.2296.2296.2 2.7434 0.2302 1636.09 1636.891 8241.0 1 974.4 69.2 1 K.LNSPFNLLSTNFLR.L * bethti4d-06.3174.3174.2 2.7084 0.2568 1632.07 1632.983 6832.2 1 1157.6 70.8 1 R.LLVLLEFFTFDFK.E ORFP:YHR205W 1 11 2.5% 824 91812 6.1 U SCH9 SGDID:S0001248, Chr VIII from 509359-511833 * bethti4d-05.0020.0020.2 3.5833 0.1758 2226.21 2225.507 7228.5 1 837.6 47.5 11 N.EIAHTIGERNILVTTASKSSP.F Proteins Peptide IDs Copies Unfiltered 5188 10468 23732 Redundant 22 60 287 Nonredundant 18 59 286 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0