DTASelect v1.9 /wfs/bfd/3/scott/beth/tii2c /wfs/dbase/nci/yeastorf3.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence ORFP:YDR531W 27 202 58.3% 367 40903 6.4 U YDR531W SGDID:S0002939, Chr IV from 1498235-1499338 * bethtii2c-04.2398.2398.3 4.6435 0.3398 3111.07 3108.352 9491.9 1 1315.3 31.5 3 R.ITQEISYNCDYGDNTFNLAIDIGGTLAK.V * bethtii2c-05.0659.0659.2 2.6212 0.1684 1155.78 1156.33 6235.3 1 1029.6 83.3 2 K.VVFSPIHSNR.L * bethtii2c-06.1903.1903.1 2.6289 0.2355 1230.32 1231.539 3638.7 1 604.5 72.2 4 K.FMELLHSIIK.E * bethtii2c-05.1802.1802.2 3.745 0.3577 1230.97 1231.539 8156.1 1 1451.6 83.3 24 K.FMELLHSIIK.E * bethtii2c-05.0655.0655.1 3.2311 0.2945 1303.24 1304.55 5519.3 1 1022.6 75.0 7 R.MTHIIATGGGAFK.F * bethtii2c-05.0686.0686.2 4.7048 0.4009 1306.91 1304.55 7259.1 1 2435.3 91.7 6 R.MTHIIATGGGAFK.F * bethtii2c-05.0624.0624.1 2.2544 0.2008 1172.12 1173.357 4240.4 1 727.3 72.7 2 M.THIIATGGGAFK.F * bethtii2c-05.0606.0606.2 2.5706 0.2807 1172.99 1173.357 5386.8 1 1358.0 81.8 1 M.THIIATGGGAFK.F * bethtii2c-01.2070.2070.2 4.7522 0.3531 1692.74 1690.936 8289.8 1 1593.4 75.0 5 K.FYDLLYENFPQIK.G * bethtii2c-01.2980.2980.3 6.8094 0.5334 3842.5 3844.157 6441.1 1 1215.5 30.6 11 R.FEEMEGLIHGLDFFIHEIPDEVFTYNDQDGER.I * bethtii2c-01.2378.2378.3 5.5018 0.3947 1919.94 1921.331 6528.3 1 1384.5 45.6 3 K.AIYPYLLVNIGSGVSILK.V * bethtii2c-02.2497.2497.2 4.9586 0.426 1921.24 1921.331 9681.7 1 2845.9 73.5 16 K.AIYPYLLVNIGSGVSILK.V * bethtii2c-05.2567.2567.3 3.9761 0.4024 2964.69 2966.45 6247.1 1 1088.5 35.6 1 K.AIYPYLLVNIGSGVSILKVTEPNNFSR.V * bethtii2c-02.2481.2481.2 2.5363 0.1714 1736.56 1737.092 7245.4 2 762.0 56.7 1 I.YPYLLVNIGSGVSILK.V * bethtii2c-01.1879.1879.2 5.5386 0.4208 1316.18 1313.624 5774.2 1 1415.0 87.5 3 Y.LLVNIGSGVSILK.V * bethtii2c-01.0190.0190.2 3.1304 0.1833 1193.12 1193.299 4557.9 1 1102.0 88.9 1 K.LYSSHESIEK.N * bethtii2c-01.2326.2326.3 5.5021 0.4948 2063.98 2065.42 7718.5 1 2267.5 47.2 6 K.SLLFAISNNIGQIAYLQAK.I * bethtii2c-01.2330.2330.2 6.729 0.5621 2067.18 2065.42 10741.6 1 3749.2 77.8 33 K.SLLFAISNNIGQIAYLQAK.I * bethtii2c-06.2750.2750.3 4.6907 0.4506 3804.94 3807.344 8736.5 1 1264.3 26.5 1 K.SLLFAISNNIGQIAYLQAKINNIQNIYFGGSYTR.G * bethtii2c-01.1483.1483.2 2.9772 0.371 1604.24 1604.847 6511.2 1 1234.7 71.4 1 F.AISNNIGQIAYLQAK.I * bethtii2c-02.0945.0945.2 4.3652 0.3854 1761.46 1760.947 7253.7 1 1652.6 75.0 8 K.INNIQNIYFGGSYTR.G * bethtii2c-01.1230.1230.2 2.6261 0.133 1237.37 1238.401 6130.7 2 700.2 70.0 1 R.GHLTTMNTLSY.A * bethtii2c-06.2110.2110.3 4.8408 0.4277 2355.81 2357.646 10243.5 1 1057.8 32.5 2 R.GHLTTMNTLSYAINFWSQGSK.Q * bethtii2c-05.2322.2322.2 5.3829 0.4938 2356.6 2357.646 9551.7 1 2322.6 62.5 2 R.GHLTTMNTLSYAINFWSQGSK.Q * bethtii2c-01.1910.1910.2 4.3286 0.4814 1602.12 1602.787 8073.0 1 1497.4 76.9 1 N.TLSYAINFWSQGSK.Q * bethtii2c-01.1355.1355.2 2.6535 0.2165 1137.32 1138.268 6182.1 1 840.2 77.8 1 Y.AINFWSQGSK.Q * bethtii2c-04.1434.1434.2 4.9705 0.5359 1667.97 1667.88 8601.5 1 3823.6 93.3 56 K.HEGYLGAMGAFLSASR.H ORFP:YBL087C 2 9 25.5% 137 14473 10.3 U RPL23A SGDID:S0000183, Chr II from 59815-59856,60361-60732, reverse complement ORFP:YER117W 2 9 25.5% 137 14473 10.3 U RPL23B SGDID:S0000919, Chr V from 396765-396806,397278-397649 bethtii2c-01.1868.1868.2 5.101 0.5638 2018.74 2017.274 5609.4 1 1148.8 65.8 6 R.ISLGLPVGAIMNCADNSGAR.N bethtii2c-01.1967.1967.2 5.7368 0.6089 1506.7 1504.843 5915.8 1 1659.3 82.1 3 R.LPAASLGDMVMATVK.K ORFP:YHL001W 3 3 21.7% 138 15153 10.9 U RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084 ORFP:YKL006W 3 3 21.7% 138 15167 10.9 U RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358 bethtii2c-02.1118.1118.2 3.5733 0.2995 1212.41 1213.46 8803.7 1 2035.4 85.0 1 K.LAAIVEIIDQK.K bethtii2c-01.2498.2498.3 3.9488 0.2194 2052.02 2052.468 8932.7 1 1837.9 43.1 1 R.QAINLGQVVLTPLTFALPR.G bethtii2c-01.2503.2503.2 4.7187 0.506 2052.05 2052.468 6356.2 1 984.0 58.3 1 R.QAINLGQVVLTPLTFALPR.G ORFP:YCR031C 2 3 21.2% 137 14537 10.7 U RPS14A SGDID:S0000627, Chr III from 177492-177498,177806-178212, reverse complement ORFP:YJL191W 2 3 21.0% 138 14650 10.5 U RPS14B SGDID:S0003727, Chr X from 73786-73795,74204-74610 bethtii2c-01.1826.1826.2 3.0213 0.1978 2015.33 2015.23 9756.6 1 831.3 50.0 2 R.IYASFNDTFVHVTDLSGK.E bethtii2c-02.0331.0331.2 2.8567 0.4554 1025.3 1025.153 4549.4 2 428.4 75.0 1 K.TPGPGGQAALR.A ORFP:YBR031W 5 7 18.5% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 ORFP:YDR012W 5 7 18.5% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii2c-06.1534.1534.2 3.5232 0.4819 1983.26 1982.29 4039.4 1 378.9 55.9 2 F.SAPIRPDIVHTVFTSVNK.N bethtii2c-02.2458.2458.2 3.6176 0.4561 1821.94 1821.127 7709.6 1 869.1 55.6 2 R.YATASAIAATAVASLVLAR.G bethtii2c-04.0443.0443.2 3.2817 0.3293 1010.82 1011.166 7555.8 1 1044.7 83.3 1 K.AVGAHSDLLK.V bethtii2c-04.0706.0706.2 4.6419 0.4007 2112.37 2113.379 9534.0 1 1513.4 57.9 1 R.IINSSEIQSAIRPAGQATQK.R bethtii2c-04.0707.0707.3 3.5168 0.2057 2112.9 2113.379 3418.0 1 539.6 38.2 1 R.IINSSEIQSAIRPAGQATQK.R ORFP:YDL083C 2 3 18.2% 143 15847 10.3 U RPS16B SGDID:S0002241, Chr IV from 306925-306948,307381-307788, reverse complement ORFP:YMR143W 2 3 18.2% 143 15847 10.3 U RPS16A SGDID:S0004751, Chr XIII from 551927-551950,552495-552902 bethtii2c-01.1964.1964.2 2.9602 0.313 1359.5 1359.649 4216.3 1 1131.1 86.4 1 K.VYEPLLLVGLDK.F bethtii2c-05.0592.0592.2 3.4628 0.5317 1443.77 1444.633 6761.3 1 1149.8 69.2 2 R.VTGGGHVSQVYAIR.Q NRL_1MCOH 5 25 16.6% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethtii2c-01.1372.1372.2 3.6804 0.3249 1189.56 1187.381 4814.1 1 942.6 72.7 1 K.GPSVFPLAPSSK.S * bethtii2c-02.0818.0818.2 2.6348 0.1369 2138.57 2139.333 6311.2 1 463.4 44.4 1 R.TPEVTCVVVDVSHEDPQVK.F * bethtii2c-01.1515.1515.2 4.1315 0.3362 1678.36 1677.859 8196.2 1 1832.5 80.8 2 K.FNWYVDGVQVHNAK.T * bethtii2c-01.2227.2227.2 4.2876 0.4257 1809.14 1809.119 9147.1 1 1166.9 56.7 19 R.VVSVLTVLHQNWLDGK.E * bethtii2c-01.1091.1091.2 2.7222 0.1257 1163.23 1162.338 5842.4 1 961.2 77.8 2 K.NQVSLTCLVK.G ORFP:YKL060C 3 6 16.2% 359 39621 5.8 U FBA1 SGDID:S0001543, Chr XI from 326050-327129, reverse complement * bethtii2c-01.1808.1808.2 3.8988 0.4565 1863.66 1864.108 7155.6 1 1343.1 65.6 3 K.TGVIVGEDVHNLFTYAK.E * bethtii2c-01.2110.2110.2 3.8789 0.3839 2161.8 2161.463 6887.8 1 709.8 47.6 2 K.FAIPAINVTSSSTAVAALEAAR.D * bethtii2c-06.1388.1388.2 3.1329 0.3372 2035.05 2036.304 4997.9 1 465.2 47.2 1 R.SIAPAYGIPVVLHSDHCAK.K ORFP:YJL177W 2 2 15.8% 184 20551 10.9 U RPL17B SGDID:S0003713, Chr X from 90783-91091,91409-91654 ORFP:YKL180W 2 2 15.8% 184 20549 10.9 U RPL17A SGDID:S0001663, Chr XI from 109271-109579,109886-110131 bethtii2c-01.1306.1306.2 2.5129 0.1413 1644.54 1645.856 10834.8 1 1835.6 70.0 1 K.FVQGLLQNAAANAEAK.G bethtii2c-05.0636.0636.2 4.5476 0.4313 1498.21 1497.737 7619.1 1 1749.9 83.3 1 K.LYVSHIQVNQAPK.Q ORFP:YHR174W 3 3 15.3% 437 46914 6.0 U ENO2 SGDID:S0001217, Chr VIII from 451325-452638 * bethtii2c-01.1676.1676.2 4.0026 0.4585 1415.12 1415.694 7125.9 1 1111.5 67.9 1 K.LGANAILGVSMAAAR.A bethtii2c-01.2903.2903.3 5.2747 0.3427 3414.27 3415.739 8491.1 1 1899.6 32.6 1 K.RYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIK.A * bethtii2c-02.1109.1109.2 2.6495 0.2772 1854.75 1856.086 9069.9 1 1537.1 61.8 1 K.TAGIQIVADDLTVTNPAR.I ORFP:YGR214W 4 6 15.1% 252 28024 4.7 U RPS0A SGDID:S0003446, Chr VII from 920570-920659,921115-921783 ORFP:YLR048W 4 6 15.1% 252 27962 4.7 U RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350 bethtii2c-04.0652.0652.2 3.4901 0.3713 1701.23 1701.882 7291.3 1 1308.6 73.1 2 R.NVQVHQEPYVFNAR.P bethtii2c-06.1398.1398.3 4.0391 0.3153 2816.57 2818.167 7621.9 1 635.0 28.1 2 R.NVQVHQEPYVFNARPDGVHVINVGK.T bethtii2c-05.0518.0518.1 2.4327 0.2772 1269.18 1270.434 2820.1 1 210.2 62.5 1 K.FAAHTGATPIAGR.F bethtii2c-05.0542.0542.2 2.6925 0.3121 1269.4 1270.434 3787.3 1 617.9 79.2 1 K.FAAHTGATPIAGR.F KERATIN03 8 10 13.8% 593 59519 5.2 U no description * bethtii2c-01.1598.1598.2 4.5124 0.4772 1968.01 1968.087 8661.9 1 1717.4 57.1 1 R.ISSSKGSLGGGFSSGGFSGGSF.S * bethtii2c-01.1236.1236.2 2.8458 0.39 1420.91 1419.491 8970.1 1 963.0 56.7 1 I.SSSKGSLGGGFSSGGF.S * bethtii2c-01.1179.1179.2 2.5126 0.2415 1619.57 1620.673 8871.4 1 688.0 44.4 1 I.SSSKGSLGGGFSSGGFSGG.S * bethtii2c-01.1156.1156.2 3.0685 0.3714 1708.02 1707.751 9074.7 1 914.0 47.4 1 I.SSSKGSLGGGFSSGGFSGGS.F * bethtii2c-01.1543.1543.2 2.8788 0.1823 1853.42 1854.927 9928.0 2 636.5 40.0 1 I.SSSKGSLGGGFSSGGFSGGSF.S * bethtii2c-04.2066.2066.3 4.3391 0.1811 2367.43 2368.652 9199.8 2 2260.2 43.8 3 K.NQILNLTTDNANILLQIDNAR.L * bethtii2c-02.1918.1918.2 2.9607 0.3349 1797.7 1798.09 9715.2 1 1701.1 70.0 1 R.NVQALEIELQSQLALK.Q * bethtii2c-01.2682.2682.2 6.4475 0.425 2747.47 2748.075 8230.6 1 2149.6 61.4 1 R.YCVQLSQIQAQISALEEQLQQIR.A KERATIN02 5 9 13.0% 622 61987 5.2 U no description * bethtii2c-01.0207.0207.2 2.5156 0.3254 1231.71 1233.283 5182.2 1 1170.8 73.3 1 T.SGGGGGGGLGSGGSIR.S * bethtii2c-01.1691.1691.2 4.5087 0.3163 2706.12 2706.761 9952.7 1 1067.0 35.5 2 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii2c-01.1730.1730.3 4.3326 0.4685 2706.55 2706.761 11575.2 1 1000.2 24.2 1 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii2c-01.2016.2016.2 3.2385 0.2862 1837.72 1839.056 9102.9 1 1364.5 66.7 2 R.HGVQELEIELQSQLSK.K * bethtii2c-02.1361.1361.2 4.6239 0.4473 2098.92 2096.308 8220.4 1 1473.0 68.8 3 R.QEIECQNQEYSLLLSIK.M ORFP:YJR123W 3 4 12.9% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651594-652271 * bethtii2c-06.1522.1522.2 3.1382 0.3687 1496.46 1496.796 2518.8 5 210.6 69.2 1 R.RVNQAIALLTIGAR.E * bethtii2c-01.1806.1806.2 4.2187 0.3883 1339.43 1340.609 8804.5 1 2004.8 83.3 1 R.VNQAIALLTIGAR.E * bethtii2c-01.2384.2384.2 4.5193 0.2594 1589.64 1587.811 9023.6 1 2516.6 78.6 2 K.TIAETLAEELINAAK.G ORFP:YGL123W 2 3 12.2% 254 27450 10.4 U RPS2 SGDID:S0003091, Chr VII from 277618-278382 * bethtii2c-01.2311.2311.2 3.729 0.3629 1740.26 1741.081 8954.7 1 1330.7 64.3 2 K.ITTIEEIFLHSLPVK.E * bethtii2c-05.0790.0790.2 3.463 0.3821 1731.2 1730.921 6514.9 1 758.5 60.0 1 R.GYWGTNLGQPHSLATK.T ORFP:YAL005C 3 3 9.3% 642 69768 5.1 U SSA1 SGDID:S0000004, Chr I from 139501-141429, reverse complement ORFP:YLL024C 3 3 9.4% 639 69470 5.1 U SSA2 SGDID:S0003947, Chr XII from 95565-97484, reverse complement bethtii2c-05.2546.2546.3 3.5937 0.0836 2708.0 2707.87 7764.6 25 564.2 26.0 1 I.EDGIFEVKATAGDTHLGGEDFDNRL.V bethtii2c-05.0830.0830.2 2.846 0.3337 1274.24 1275.493 8614.6 1 1334.0 83.3 1 R.LVNHFIQEFK.R bethtii2c-02.2263.2263.2 3.7831 0.4498 2577.2 2578.792 8243.7 1 856.3 40.0 1 R.SINPDEAVAYGAAVQAAILTGDESSK.T KERATIN13 3 7 8.2% 643 65494 6.6 U no description * bethtii2c-01.1418.1418.2 3.0409 0.1736 1798.05 1796.935 5551.8 1 651.7 45.0 2 G.AGGGFGSRSLAGSGGSIASIS.G * bethtii2c-04.2426.2426.3 4.538 0.4692 1995.33 1995.202 8555.3 1 1534.6 46.7 4 R.THNLEPYFESFINNLR.R * bethtii2c-04.0650.0650.2 4.3794 0.4172 1845.68 1846.007 7971.1 1 1480.2 70.0 1 K.KQISNLQQSISDAEQR.G KERATIN21 2 2 7.3% 357 39219 5.2 U no description bethtii2c-01.2242.2242.2 2.6532 0.3111 1890.76 1892.122 5352.5 1 805.0 67.9 1 -.QNLEPLFEQYINNLR.R bethtii2c-02.1029.1029.2 3.2078 0.3262 1264.06 1264.464 5914.2 1 1289.6 80.0 1 K.LALDVEIATYR.K KERATIN22 3 3 6.4% 645 65865 8.0 U no description * bethtii2c-01.1751.1751.3 5.1929 0.2411 2399.13 2400.445 9419.9 1 4942.7 47.4 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii2c-01.1750.1750.2 3.3613 0.339 2399.27 2400.445 8939.8 1 1524.4 43.1 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F bethtii2c-02.1029.1029.2 3.2078 0.3262 1264.06 1264.464 5914.2 1 1289.6 80.0 1 K.LALDVEIATYR.K ORFP:YLR044C 2 3 6.0% 563 61495 6.2 U PDC1 SGDID:S0004034, Chr XII from 232391-234082, reverse complement * bethtii2c-01.1252.1252.2 3.0726 0.3176 1597.99 1597.852 5591.7 1 808.5 60.7 1 R.YGGVYVGTLSKPEVK.E * bethtii2c-04.0866.0866.2 2.9721 0.2515 2283.17 2282.475 7844.6 1 645.3 50.0 2 T.GEWDKLTQDKSFNDNSKIR.M ORFP:YKR061W 1 12 4.2% 425 50651 5.8 U KTR2 SGDID:S0001769, Chr XI from 557313-558590 * bethtii2c-04.1122.1122.2 3.8471 0.186 2212.13 2210.423 9616.0 1 1312.5 55.9 12 D.SNHPDNIDLNVISCLRRW.W Proteins Peptide IDs Copies Unfiltered 4880 11517 16762 Redundant 29 90 325 Nonredundant 21 89 324 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0